data_reader.py

"""This module contains data processing related logic.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function

import random
import struct
import Queue
import time
import numpy as np
from threading import Thread
import signal
from multiprocessing import Manager, Process
import data_utils.augmentor.trans_mean_variance_norm as trans_mean_variance_norm
import data_utils.augmentor.trans_add_delta as trans_add_delta
from data_utils.util import suppress_complaints, suppress_signal
from data_utils.util import CriticalException, ForceExitWrapper


class SampleInfo(object):
    """SampleInfo holds the necessary information to load a sample from disk.

    Args:
        feature_bin_path (str): File containing the feature data.
        feature_start (int): Start position of the sample's feature data.
        feature_size (int): Byte count of the sample's feature data.
        feature_frame_num (int): Time length of the sample.
        feature_dim (int): Feature dimension of one frame.
        label_bin_path (str): File containing the label data.
        label_size (int): Byte count of the sample's label data.
        label_frame_num (int): Label number of the sample.
    """

    def __init__(self, feature_bin_path, feature_start, feature_size,
                 feature_frame_num, feature_dim, label_bin_path, label_start,
                 label_size, label_frame_num):
        self.feature_bin_path = feature_bin_path
        self.feature_start = feature_start
        self.feature_size = feature_size
        self.feature_frame_num = feature_frame_num
        self.feature_dim = feature_dim

        self.label_bin_path = label_bin_path
        self.label_start = label_start
        self.label_size = label_size
        self.label_frame_num = label_frame_num


class SampleInfoBucket(object):
    """SampleInfoBucket contains paths of several description files. Feature
    description file contains necessary information (including path of binary
    data, sample start position, sample byte number etc.) to access samples'
    feature data and the same with the label description file. SampleInfoBucket
    is the minimum unit to do shuffle.

    Args:
        feature_bin_paths (list|tuple): Files containing the binary feature
                                        data.
        feature_desc_paths (list|tuple): Files containing the description of
                                         samples' feature data.
        label_bin_paths (list|tuple): Files containing the binary label data.
        label_desc_paths (list|tuple): Files containing the description of
                                       samples' label data.
        split_perturb(int): Maximum perturbation value for length of
                            sub-sentence when splitting long sentence.
        split_sentence_threshold(int): Sentence whose length larger than
                                the value will trigger split operation.
        split_sub_sentence_len(int): sub-sentence length is equal to
                                    (split_sub_sentence_len + rand() % split_perturb).
    """

    def __init__(self,
                 feature_bin_paths,
                 feature_desc_paths,
                 label_bin_paths,
                 label_desc_paths,
                 split_perturb=50,
                 split_sentence_threshold=512,
                 split_sub_sentence_len=256):
        block_num = len(label_bin_paths)
        assert len(label_desc_paths) == block_num
        assert len(feature_bin_paths) == block_num
        assert len(feature_desc_paths) == block_num
        self._block_num = block_num

        self._feature_bin_paths = feature_bin_paths
        self._feature_desc_paths = feature_desc_paths
        self._label_bin_paths = label_bin_paths
        self._label_desc_paths = label_desc_paths
        self._split_perturb = split_perturb
        self._split_sentence_threshold = split_sentence_threshold
        self._split_sub_sentence_len = split_sub_sentence_len
        self._rng = random.Random(0)

    def generate_sample_info_list(self):
        sample_info_list = []
        for block_idx in xrange(self._block_num):
            label_bin_path = self._label_bin_paths[block_idx]
            label_desc_path = self._label_desc_paths[block_idx]
            feature_bin_path = self._feature_bin_paths[block_idx]
            feature_desc_path = self._feature_desc_paths[block_idx]

            label_desc_lines = open(label_desc_path).readlines()
            feature_desc_lines = open(feature_desc_path).readlines()

            sample_num = int(label_desc_lines[0].split()[1])
            assert sample_num == int(feature_desc_lines[0].split()[1])

            for i in xrange(sample_num):
                feature_desc_split = feature_desc_lines[i + 1].split()
                feature_start = int(feature_desc_split[2])
                feature_size = int(feature_desc_split[3])
                feature_frame_num = int(feature_desc_split[4])
                feature_dim = int(feature_desc_split[5])

                label_desc_split = label_desc_lines[i + 1].split()
                label_start = int(label_desc_split[2])
                label_size = int(label_desc_split[3])
                label_frame_num = int(label_desc_split[4])
                assert feature_frame_num == label_frame_num

                if self._split_sentence_threshold == -1 or \
                        self._split_perturb == -1 or \
                        self._split_sub_sentence_len == -1 \
                        or self._split_sentence_threshold >= feature_frame_num:
                    sample_info_list.append(
                        SampleInfo(feature_bin_path, feature_start,
                                   feature_size, feature_frame_num, feature_dim,
                                   label_bin_path, label_start, label_size,
                                   label_frame_num))
                #split sentence
                else:
                    cur_frame_pos = 0
                    cur_frame_len = 0
                    remain_frame_num = feature_frame_num
                    while True:
                        if remain_frame_num > self._split_sentence_threshold:
                            cur_frame_len = self._split_sub_sentence_len + \
                                    self._rng.randint(0, self._split_perturb)
                            if cur_frame_len > remain_frame_num:
                                cur_frame_len = remain_frame_num
                        else:
                            cur_frame_len = remain_frame_num

                        sample_info_list.append(
                            SampleInfo(
                                feature_bin_path, feature_start + cur_frame_pos
                                * feature_dim * 4, cur_frame_len * feature_dim *
                                4, cur_frame_len, feature_dim, label_bin_path,
                                label_start + cur_frame_pos * 4, cur_frame_len *
                                4, cur_frame_len))

                        remain_frame_num -= cur_frame_len
                        cur_frame_pos += cur_frame_len
                        if remain_frame_num <= 0:
                            break

        return sample_info_list


class EpochEndSignal():
    pass


class DataReader(object):
    """DataReader provides basic audio sample preprocessing pipeline including
    data loading and data augmentation.

    Args:
        feature_file_list (str): File containing paths of feature data file and
                                 corresponding description file.
        label_file_list (str): File containing paths of label data file and
                               corresponding description file.
        drop_frame_len (int): Samples whose label length above the value will be
                              dropped.(Using '-1' to disable the policy)
        process_num (int): Number of processes for processing data.
        sample_buffer_size (int): Buffer size to indicate the maximum samples
                                  cached.
        sample_info_buffer_size (int): Buffer size to indicate the maximum
                                       sample information cached.
        batch_buffer_size (int): Buffer size to indicate the maximum batch
                                 cached.
        shuffle_block_num (int): Block number indicating the minimum unit to do
                                 shuffle.
        random_seed (int): Random seed.
        verbose (int): If set to 0, complaints including exceptions and signal
                       traceback from sub-process will be suppressed. If set
                       to 1, all complaints will be printed.
    """

    def __init__(self,
                 feature_file_list,
                 label_file_list,
                 drop_frame_len=512,
                 process_num=10,
                 sample_buffer_size=1024,
                 sample_info_buffer_size=1024,
                 batch_buffer_size=1024,
                 shuffle_block_num=10,
                 random_seed=0,
                 verbose=0):
        self._feature_file_list = feature_file_list
        self._label_file_list = label_file_list
        self._drop_frame_len = drop_frame_len
        self._shuffle_block_num = shuffle_block_num
        self._block_info_list = None
        self._rng = random.Random(random_seed)
        self._bucket_list = None
        self.generate_bucket_list(True)
        self._order_id = 0
        self._manager = Manager()
        self._sample_buffer_size = sample_buffer_size
        self._sample_info_buffer_size = sample_info_buffer_size
        self._batch_buffer_size = batch_buffer_size
        self._process_num = process_num
        self._verbose = verbose
        self._force_exit = ForceExitWrapper(self._manager.Value('b', False))

    def generate_bucket_list(self, is_shuffle):
        if self._block_info_list is None:
            block_feature_info_lines = open(self._feature_file_list).readlines()
            block_label_info_lines = open(self._label_file_list).readlines()
            assert len(block_feature_info_lines) == len(block_label_info_lines)
            self._block_info_list = []
            for i in xrange(0, len(block_feature_info_lines), 2):
                block_info = (block_feature_info_lines[i],
                              block_feature_info_lines[i + 1],
                              block_label_info_lines[i],
                              block_label_info_lines[i + 1])
                self._block_info_list.append(
                    map(lambda line: line.strip(), block_info))

        if is_shuffle:
            self._rng.shuffle(self._block_info_list)

        self._bucket_list = []
        for i in xrange(0, len(self._block_info_list), self._shuffle_block_num):
            bucket_block_info = self._block_info_list[i:i +
                                                      self._shuffle_block_num]
            self._bucket_list.append(
                SampleInfoBucket(
                    map(lambda info: info[0], bucket_block_info),
                    map(lambda info: info[1], bucket_block_info),
                    map(lambda info: info[2], bucket_block_info),
                    map(lambda info: info[3], bucket_block_info)))

    # @TODO make this configurable
    def set_transformers(self, transformers):
        self._transformers = transformers

    def _sample_generator(self):
        sample_info_queue = self._manager.Queue(self._sample_info_buffer_size)
        sample_queue = self._manager.Queue(self._sample_buffer_size)
        self._order_id = 0

        @suppress_complaints(verbose=self._verbose, notify=self._force_exit)
        def ordered_feeding_task(sample_info_queue):
            for sample_info_bucket in self._bucket_list:
                try:
                    sample_info_list = \
                            sample_info_bucket.generate_sample_info_list()
                except Exception as e:
                    raise CriticalException(e)
                else:
                    self._rng.shuffle(sample_info_list)  # do shuffle here
                    for sample_info in sample_info_list:
                        sample_info_queue.put((sample_info, self._order_id))
                        self._order_id += 1

            for i in xrange(self._process_num):
                sample_info_queue.put(EpochEndSignal())

        feeding_thread = Thread(
            target=ordered_feeding_task, args=(sample_info_queue, ))
        feeding_thread.daemon = True
        feeding_thread.start()

        @suppress_complaints(verbose=self._verbose, notify=self._force_exit)
        def ordered_processing_task(sample_info_queue, sample_queue, out_order):
            if self._verbose == 0:
                signal.signal(signal.SIGTERM, suppress_signal)
                signal.signal(signal.SIGINT, suppress_signal)

            def read_bytes(fpath, start, size):
                try:
                    f = open(fpath, 'r')
                    f.seek(start, 0)
                    binary_bytes = f.read(size)
                    f.close()
                    return binary_bytes
                except Exception as e:
                    raise CriticalException(e)

            ins = sample_info_queue.get()

            while not isinstance(ins, EpochEndSignal):
                sample_info, order_id = ins

                feature_bytes = read_bytes(sample_info.feature_bin_path,
                                           sample_info.feature_start,
                                           sample_info.feature_size)

                assert sample_info.feature_frame_num * sample_info.feature_dim * 4 \
                        == len(feature_bytes), \
                        (sample_info.feature_bin_path,
                         sample_info.feature_frame_num,
                         sample_info.feature_dim,
                         len(feature_bytes))

                label_bytes = read_bytes(sample_info.label_bin_path,
                                         sample_info.label_start,
                                         sample_info.label_size)

                assert sample_info.label_frame_num * 4 == len(label_bytes), (
                    sample_info.label_bin_path, sample_info.label_array,
                    len(label_bytes))

                label_array = struct.unpack('I' * sample_info.label_frame_num,
                                            label_bytes)
                label_data = np.array(
                    label_array, dtype='int64').reshape(
                        (sample_info.label_frame_num, 1))

                feature_frame_num = sample_info.feature_frame_num
                feature_dim = sample_info.feature_dim
                assert feature_frame_num * feature_dim * 4 == len(feature_bytes)
                feature_array = struct.unpack('f' * feature_frame_num *
                                              feature_dim, feature_bytes)
                feature_data = np.array(
                    feature_array, dtype='float32').reshape((
                        sample_info.feature_frame_num, sample_info.feature_dim))

                sample_data = (feature_data, label_data)
                for transformer in self._transformers:
                    # @TODO(pkuyym) to make transfomer only accept feature_data
                    sample_data = transformer.perform_trans(sample_data)

                while order_id != out_order[0]:
                    time.sleep(0.001)

                # drop long sentence
                if self._drop_frame_len == -1 or \
                        self._drop_frame_len >= sample_data[0].shape[0]:
                    sample_queue.put(sample_data)

                out_order[0] += 1
                ins = sample_info_queue.get()

            sample_queue.put(EpochEndSignal())

        out_order = self._manager.list([0])
        args = (sample_info_queue, sample_queue, out_order)
        workers = [
            Process(
                target=ordered_processing_task, args=args)
            for _ in xrange(self._process_num)
        ]

        for w in workers:
            w.daemon = True
            w.start()

        finished_process_num = 0

        while self._force_exit == False:
            try:
                sample = sample_queue.get_nowait()
            except Queue.Empty:
                time.sleep(0.001)
            else:
                if isinstance(sample, EpochEndSignal):
                    finished_process_num += 1
                    if finished_process_num >= self._process_num:
                        break
                    else:
                        continue

                yield sample

    def batch_iterator(self, batch_size, minimum_batch_size):
        def batch_to_ndarray(batch_samples, lod):
            assert len(batch_samples)
            frame_dim = batch_samples[0][0].shape[1]
            batch_feature = np.zeros((lod[-1], frame_dim), dtype="float32")
            batch_label = np.zeros((lod[-1], 1), dtype="int64")
            start = 0
            for sample in batch_samples:
                frame_num = sample[0].shape[0]
                batch_feature[start:start + frame_num, :] = sample[0]
                batch_label[start:start + frame_num, :] = sample[1]
                start += frame_num
            return (batch_feature, batch_label)

        @suppress_complaints(verbose=self._verbose, notify=self._force_exit)
        def batch_assembling_task(sample_generator, batch_queue):
            batch_samples = []
            lod = [0]
            for sample in sample_generator():
                batch_samples.append(sample)
                lod.append(lod[-1] + sample[0].shape[0])
                if len(batch_samples) == batch_size:
                    (batch_feature, batch_label) = batch_to_ndarray(
                        batch_samples, lod)
                    batch_queue.put((batch_feature, batch_label, lod))
                    batch_samples = []
                    lod = [0]

            if len(batch_samples) >= minimum_batch_size:
                (batch_feature, batch_label) = batch_to_ndarray(batch_samples,
                                                                lod)
                batch_queue.put((batch_feature, batch_label, lod))

            batch_queue.put(EpochEndSignal())

        batch_queue = Queue.Queue(self._batch_buffer_size)

        assembling_thread = Thread(
            target=batch_assembling_task,
            args=(self._sample_generator, batch_queue))
        assembling_thread.daemon = True
        assembling_thread.start()

        while self._force_exit == False:
            try:
                batch_data = batch_queue.get_nowait()
            except Queue.Empty:
                time.sleep(0.001)
            else:
                if isinstance(batch_data, EpochEndSignal):
                    break
                yield batch_data