openmpi_en.html 12.9 KB
Newer Older
1 2


3 4


5 6 7 8 9 10 11 12
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
  <meta charset="utf-8">
  
  <meta name="viewport" content="width=device-width, initial-scale=1.0">
  
13
  <title>OpenMPI &mdash; PaddlePaddle  documentation</title>
14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32
  

  
  

  

  
  
    

  

  
  
    <link rel="stylesheet" href="../../../_static/css/theme.css" type="text/css" />
  

  
33

34 35 36 37
  
        <link rel="index" title="Index"
              href="../../../genindex.html"/>
        <link rel="search" title="Search" href="../../../search.html"/>
38
    <link rel="top" title="PaddlePaddle  documentation" href="../../../index.html"/>
39
        <link rel="up" title="Use different clusters" href="index_en.html"/>
40 41
        <link rel="next" title="Kubernetes" href="k8s_en.html"/>
        <link rel="prev" title="Fabric" href="fabric_en.html"/> 
42 43 44 45 46 47 48 49 50 51
<script>
var _hmt = _hmt || [];
(function() {
  var hm = document.createElement("script");
  hm.src = "//hm.baidu.com/hm.js?b9a314ab40d04d805655aab1deee08ba";
  var s = document.getElementsByTagName("script")[0]; 
  s.parentNode.insertBefore(hm, s);
})();
</script>

52 53 54 55 56 57 58 59

  
  <script src="../../../_static/js/modernizr.min.js"></script>

</head>

<body class="wy-body-for-nav" role="document">

60 61 62 63 64 65 66 67 68 69 70 71 72
  <div class="wy-grid-for-nav">

    
    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
      <div class="wy-side-scroll">
        <div class="wy-side-nav-search">
          

          
            <a href="../../../index_en.html" class="icon icon-home"> PaddlePaddle
          

          
73 74
          </a>

75 76 77 78 79 80
          
            
            
          

          
81 82 83 84 85 86
<div role="search">
  <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
    <input type="text" name="q" placeholder="Search docs" />
    <input type="hidden" name="check_keywords" value="yes" />
    <input type="hidden" name="area" value="default" />
  </form>
87
</div>
88 89

          
90 91 92 93
        </div>

        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
          
94 95 96 97 98 99 100 101 102 103 104 105 106 107
<nav class="doc-menu-vertical" role="navigation">

<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="../../../getstarted/index_en.html">GET STARTED</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../getstarted/quickstart_en.html">Quick Start</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../getstarted/concepts/use_concepts_en.html">Basic Concept</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="../../../build_and_install/index_en.html">Install and Build</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/pip_install_en.html">Install using pip</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/docker_install_en.html">Run in Docker Containers</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/build_from_source_en.html">Build from Sources</a></li>
</ul>
</li>
108
<li class="toctree-l1 current"><a class="reference internal" href="../../index_en.html">HOW TO</a><ul class="current">
109 110 111 112 113 114
<li class="toctree-l2"><a class="reference internal" href="../../cmd_parameter/index_en.html">Set Command-line Parameters</a><ul>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/use_case_en.html">Use Case</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/arguments_en.html">Argument Outline</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/detail_introduction_en.html">Detail Description</a></li>
</ul>
</li>
115 116 117 118
<li class="toctree-l2 current"><a class="reference internal" href="../index_en.html">Distributed Training</a><ul class="current">
<li class="toctree-l3"><a class="reference internal" href="../preparations_en.html">Preparations</a></li>
<li class="toctree-l3"><a class="reference internal" href="../cmd_argument_en.html">Command-line arguments</a></li>
<li class="toctree-l3 current"><a class="reference internal" href="index_en.html">Use different clusters</a><ul class="current">
119 120 121 122
<li class="toctree-l4"><a class="reference internal" href="fabric_en.html">Fabric</a></li>
<li class="toctree-l4 current"><a class="current reference internal" href="#">OpenMPI</a></li>
<li class="toctree-l4"><a class="reference internal" href="k8s_en.html">Kubernetes</a></li>
<li class="toctree-l4"><a class="reference internal" href="k8s_aws_en.html">Kubernetes on AWS</a></li>
123 124
</ul>
</li>
125 126
</ul>
</li>
127 128 129 130 131 132
<li class="toctree-l2"><a class="reference internal" href="../../capi/index_en.html">C-API Prediction Library</a><ul>
<li class="toctree-l3"><a class="reference internal" href="../../capi/compile_paddle_lib_en.html">Install and Build</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../capi/organization_of_the_inputs_en.html">Input/Output Data Organization</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../capi/workflow_of_capi_en.html">C-API Workflow</a></li>
</ul>
</li>
133 134 135 136 137 138 139
<li class="toctree-l2"><a class="reference internal" href="../../rnn/index_en.html">RNN Models</a><ul>
<li class="toctree-l3"><a class="reference internal" href="../../rnn/rnn_config_en.html">RNN Configuration</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../rnn/recurrent_group_en.html">Recurrent Group Tutorial</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../rnn/hierarchical_layer_en.html">Layers supporting hierarchical sequence as input</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../rnn/hrnn_rnn_api_compare_en.html">API comparision between RNN and hierarchical RNN</a></li>
</ul>
</li>
140 141 142
<li class="toctree-l2"><a class="reference internal" href="../../optimization/gpu_profiling_en.html">Tune GPU Performance</a></li>
</ul>
</li>
143 144 145
<li class="toctree-l1"><a class="reference internal" href="../../../dev/index_en.html">Development</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../dev/contribute_to_paddle_en.html">Contribute Code</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../dev/write_docs_en.html">Contribute Documentation</a></li>
146
<li class="toctree-l2"><a class="reference internal" href="../../../dev/new_layer_en.html">Write New Layers</a></li>
147 148 149 150 151 152 153 154 155 156
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="../../../faq/index_en.html">FAQ</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../faq/build_and_install/index_en.html">Install, Build and Unit test</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../faq/model/index_en.html">Model Configuration</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../faq/parameter/index_en.html">Parameter Setting</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../faq/local/index_en.html">Local Training and Prediction</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../faq/cluster/index_en.html">Cluster Training and Prediction</a></li>
</ul>
</li>
157 158
</ul>

159 160
</nav>

161 162
        </div>
      </div>
163 164
    </nav>

165
    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
166

167 168 169 170 171
      
      <nav class="wy-nav-top" role="navigation" aria-label="top navigation">
        <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
        <a href="../../../index_en.html">PaddlePaddle</a>
      </nav>
172 173


174 175 176 177
      
      <div class="wy-nav-content">
        <div class="rst-content">
          
178

179
 
180 181 182 183 184



<div role="navigation" aria-label="breadcrumbs navigation">
  <ul class="wy-breadcrumbs">
185
    <li><a href="../../../index_en.html">Docs</a> &raquo;</li>
186
      
187
          <li><a href="../../index_en.html">HOW TO</a> &raquo;</li>
188
      
189
          <li><a href="../index_en.html">Distributed Training</a> &raquo;</li>
190
      
191
          <li><a href="index_en.html">Use different clusters</a> &raquo;</li>
192
      
193
    <li>OpenMPI</li>
194 195 196 197 198 199 200
      <li class="wy-breadcrumbs-aside">
        
          
            <a href="../../../_sources/howto/cluster/multi_cluster/openmpi_en.md.txt" rel="nofollow"> View page source</a>
          
        
      </li>
201
  </ul>
202
  <hr/>
203 204 205 206
</div>
          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
           <div itemprop="articleBody">
            
207 208
  <div class="section" id="openmpi">
<span id="openmpi"></span><h1>OpenMPI<a class="headerlink" href="#openmpi" title="Permalink to this headline"></a></h1>
209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252
<div class="section" id="prepare-an-openmpi-cluster">
<span id="prepare-an-openmpi-cluster"></span><h2>Prepare an OpenMPI cluster<a class="headerlink" href="#prepare-an-openmpi-cluster" title="Permalink to this headline"></a></h2>
<p>Run the following command to start a 3-node MPI cluster and one &#8220;head&#8221; node.</p>
<div class="highlight-bash"><div class="highlight"><pre><span></span><span class="nb">cd</span> paddle/scripts/cluster_train_v2/openmpi/docker_cluster
kubectl create -f head.yaml
kubectl create -f mpi-nodes.yaml
</pre></div>
</div>
<p>Then you can log in to every OpenMPI node using ssh without input any passwords.</p>
</div>
<div class="section" id="launching-cluster-job">
<span id="launching-cluster-job"></span><h2>Launching Cluster Job<a class="headerlink" href="#launching-cluster-job" title="Permalink to this headline"></a></h2>
<p>Follow the steps to launch a PaddlePaddle training job in OpenMPI cluster:\</p>
<div class="highlight-bash"><div class="highlight"><pre><span></span><span class="c1"># find out node IP addresses</span>
kubectl get po -o wide
<span class="c1"># generate a &quot;machines&quot; file containing node IP addresses</span>
kubectl get po -o wide <span class="p">|</span> grep nodes <span class="p">|</span> awk <span class="s1">&#39;{print $6}&#39;</span> &gt; machines
<span class="c1"># copy necessary files onto &quot;head&quot; node</span>
scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@<span class="o">[</span>headIP<span class="o">]</span>:~
<span class="c1"># login to head node using ssh</span>
ssh -i ssh/id_rsa.mpi.pub tutorial@<span class="o">[</span>headIP<span class="o">]</span>
<span class="c1"># --------------- in head node ---------------</span>
<span class="c1"># prepare training data</span>
python prepare.py
<span class="c1"># copy training data and dict file to MPI nodes</span>
cat machines <span class="p">|</span> xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines <span class="o">{}</span>:/home/tutorial
<span class="c1"># creat a directory for storing log files</span>
mpirun -hostfile machines -n <span class="m">3</span> mkdir /home/tutorial/logs
<span class="c1"># copy training data to every node</span>
scp train.txt-00000 test.txt-00000 <span class="o">[</span>node1IP<span class="o">]</span>:/home/tutorial
scp train.txt-00001 test.txt-00001 <span class="o">[</span>node2IP<span class="o">]</span>:/home/tutorial
scp train.txt-00002 test.txt-00002 <span class="o">[</span>node3IP<span class="o">]</span>:/home/tutorial
<span class="c1"># start the job</span>
mpirun -hostfile machines -n <span class="m">3</span>  /home/tutorial/start_mpi_train.sh
</pre></div>
</div>
</div>
</div>


           </div>
          </div>
          <footer>
  
253 254
    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
      
255
        <a href="k8s_en.html" class="btn btn-neutral float-right" title="Kubernetes" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
256 257
      
      
258
        <a href="fabric_en.html" class="btn btn-neutral" title="Fabric" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
259 260 261
      
    </div>
  
262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291

  <hr/>

  <div role="contentinfo">
    <p>
        &copy; Copyright 2016, PaddlePaddle developers.

    </p>
  </div>
  Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. 

</footer>

        </div>
      </div>

    </section>

  </div>
  


  

    <script type="text/javascript">
        var DOCUMENTATION_OPTIONS = {
            URL_ROOT:'../../../',
            VERSION:'',
            COLLAPSE_INDEX:false,
            FILE_SUFFIX:'.html',
292
            HAS_SOURCE:  true
293 294 295 296 297 298
        };
    </script>
      <script type="text/javascript" src="../../../_static/jquery.js"></script>
      <script type="text/javascript" src="../../../_static/underscore.js"></script>
      <script type="text/javascript" src="../../../_static/doctools.js"></script>
      <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
299

300 301 302 303 304 305
  

  
  
    <script type="text/javascript" src="../../../_static/js/theme.js"></script>
  
306

307
  
308 309 310 311 312 313 314
  
  <script type="text/javascript">
      jQuery(function () {
          SphinxRtdTheme.StickyNav.enable();
      });
  </script>
   
315 316 317

</body>
</html>