openmpi_en.html 12.3 KB
Newer Older
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34


<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
  <meta charset="utf-8">
  
  <meta name="viewport" content="width=device-width, initial-scale=1.0">
  
  <title>Cluster Training Using OpenMPI &mdash; PaddlePaddle  documentation</title>
  

  
  

  

  
  
    

  

  
  
    <link rel="stylesheet" href="../../../_static/css/theme.css" type="text/css" />
  

  
  
        <link rel="index" title="Index"
              href="../../../genindex.html"/>
        <link rel="search" title="Search" href="../../../search.html"/>
35
    <link rel="top" title="PaddlePaddle  documentation" href="../../../index.html"/>
36
        <link rel="up" title="Use different clusters" href="index_en.html"/>
37 38
        <link rel="next" title="PaddlePaddle On Kubernetes" href="k8s_en.html"/>
        <link rel="prev" title="Cluster Training Using Fabric" href="fabric_en.html"/> 
39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85

  <link rel="stylesheet" href="https://cdn.jsdelivr.net/perfect-scrollbar/0.6.14/css/perfect-scrollbar.min.css" type="text/css" />
  <link rel="stylesheet" href="../../../_static/css/override.css" type="text/css" />
  <script>
  var _hmt = _hmt || [];
  (function() {
    var hm = document.createElement("script");
    hm.src = "//hm.baidu.com/hm.js?b9a314ab40d04d805655aab1deee08ba";
    var s = document.getElementsByTagName("script")[0]; 
    s.parentNode.insertBefore(hm, s);
  })();
  </script>

  

  
  <script src="../../../_static/js/modernizr.min.js"></script>

</head>

<body class="wy-body-for-nav" role="document">

  
  <header class="site-header">
    <div class="site-logo">
      <a href="/"><img src="../../../_static/images/PP_w.png"></a>
    </div>
    <div class="site-nav-links">
      <div class="site-menu">
        <a class="fork-on-github" href="https://github.com/PaddlePaddle/Paddle" target="_blank"><i class="fa fa-github"></i>Fork me on Github</a>
        <div class="language-switcher dropdown">
          <a type="button" data-toggle="dropdown">
            <span>English</span>
            <i class="fa fa-angle-up"></i>
            <i class="fa fa-angle-down"></i>
          </a>
          <ul class="dropdown-menu">
            <li><a href="/doc_cn">中文</a></li>
            <li><a href="/doc">English</a></li>
          </ul>
        </div>
        <ul class="site-page-links">
          <li><a href="/">Home</a></li>
        </ul>
      </div>
      <div class="doc-module">
        
86
        <ul class="current">
87
<li class="toctree-l1"><a class="reference internal" href="../../../getstarted/index_en.html">GET STARTED</a></li>
88
<li class="toctree-l1"><a class="reference internal" href="../../../build_and_install/index_en.html">Install and Build</a></li>
89
<li class="toctree-l1 current"><a class="reference internal" href="../../index_en.html">HOW TO</a></li>
90
<li class="toctree-l1"><a class="reference internal" href="../../../dev/index_en.html">Development</a></li>
91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110
</ul>

        
<div role="search">
  <form id="rtd-search-form" class="wy-form" action="../../../search.html" method="get">
    <input type="text" name="q" placeholder="Search docs" />
    <input type="hidden" name="check_keywords" value="yes" />
    <input type="hidden" name="area" value="default" />
  </form>
</div>        
      </div>
    </div>
  </header>
  
  <div class="main-content-wrap">

    
    <nav class="doc-menu-vertical" role="navigation">
        
          
111
          <ul class="current">
112
<li class="toctree-l1"><a class="reference internal" href="../../../getstarted/index_en.html">GET STARTED</a><ul>
113
<li class="toctree-l2"><a class="reference internal" href="../../../getstarted/quickstart_en.html">Quick Start</a></li>
114 115
</ul>
</li>
116 117 118 119
<li class="toctree-l1"><a class="reference internal" href="../../../build_and_install/index_en.html">Install and Build</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/pip_install_en.html">Install Using pip</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/docker_install_en.html">Run in Docker Containers</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../build_and_install/build_from_source_en.html">Build from Sources</a></li>
120 121
</ul>
</li>
122
<li class="toctree-l1 current"><a class="reference internal" href="../../index_en.html">HOW TO</a><ul class="current">
123 124 125 126
<li class="toctree-l2"><a class="reference internal" href="../../cmd_parameter/index_en.html">Set Command-line Parameters</a><ul>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/use_case_en.html">Use Case</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/arguments_en.html">Argument Outline</a></li>
<li class="toctree-l3"><a class="reference internal" href="../../cmd_parameter/detail_introduction_en.html">Detail Description</a></li>
127 128
</ul>
</li>
129 130 131 132 133 134 135 136
<li class="toctree-l2 current"><a class="reference internal" href="../index_en.html">Distributed Training</a><ul class="current">
<li class="toctree-l3"><a class="reference internal" href="../preparations_en.html">Preparations</a></li>
<li class="toctree-l3"><a class="reference internal" href="../cmd_argument_en.html">Command-line arguments</a></li>
<li class="toctree-l3 current"><a class="reference internal" href="index_en.html">Use different clusters</a><ul class="current">
<li class="toctree-l4"><a class="reference internal" href="fabric_en.html">Cluster Training Using Fabric</a></li>
<li class="toctree-l4 current"><a class="current reference internal" href="#">Cluster Training Using OpenMPI</a></li>
<li class="toctree-l4"><a class="reference internal" href="k8s_en.html">PaddlePaddle On Kubernetes</a></li>
<li class="toctree-l4"><a class="reference internal" href="k8s_aws_en.html">Distributed PaddlePaddle Training on AWS with Kubernetes</a></li>
137 138
</ul>
</li>
139 140 141 142
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="../../rnn/index_en.html">RNN Models</a><ul>
<li class="toctree-l3"><a class="reference internal" href="../../rnn/rnn_config_en.html">RNN Configuration</a></li>
143 144 145 146 147
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="../../optimization/gpu_profiling_en.html">Tune GPU Performance</a></li>
</ul>
</li>
148 149 150 151 152 153
<li class="toctree-l1"><a class="reference internal" href="../../../dev/index_en.html">Development</a><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../dev/new_layer_en.html">Write New Layers</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../dev/contribute_to_paddle_en.html">Contribute Code</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../dev/write_docs_en.html">Contribute Documentation</a></li>
</ul>
</li>
154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173
</ul>

        
    </nav>
    
    <section class="doc-content-wrap">

      

 







<div role="navigation" aria-label="breadcrumbs navigation">
  <ul class="wy-breadcrumbs">
      
174 175
        <li><a href="../../index_en.html">HOW TO</a> > </li>
      
176 177 178
        <li><a href="../index_en.html">Distributed Training</a> > </li>
      
        <li><a href="index_en.html">Use different clusters</a> > </li>
179
      
180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234
    <li>Cluster Training Using OpenMPI</li>
  </ul>
</div>
      
      <div class="wy-nav-content" id="doc-content">
        <div class="rst-content">
          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
           <div itemprop="articleBody">
            
  <div class="section" id="cluster-training-using-openmpi">
<span id="cluster-training-using-openmpi"></span><h1>Cluster Training Using OpenMPI<a class="headerlink" href="#cluster-training-using-openmpi" title="Permalink to this headline"></a></h1>
<div class="section" id="prepare-an-openmpi-cluster">
<span id="prepare-an-openmpi-cluster"></span><h2>Prepare an OpenMPI cluster<a class="headerlink" href="#prepare-an-openmpi-cluster" title="Permalink to this headline"></a></h2>
<p>Run the following command to start a 3-node MPI cluster and one &#8220;head&#8221; node.</p>
<div class="highlight-bash"><div class="highlight"><pre><span></span><span class="nb">cd</span> paddle/scripts/cluster_train_v2/openmpi/docker_cluster
kubectl create -f head.yaml
kubectl create -f mpi-nodes.yaml
</pre></div>
</div>
<p>Then you can log in to every OpenMPI node using ssh without input any passwords.</p>
</div>
<div class="section" id="launching-cluster-job">
<span id="launching-cluster-job"></span><h2>Launching Cluster Job<a class="headerlink" href="#launching-cluster-job" title="Permalink to this headline"></a></h2>
<p>Follow the steps to launch a PaddlePaddle training job in OpenMPI cluster:\</p>
<div class="highlight-bash"><div class="highlight"><pre><span></span><span class="c1"># find out node IP addresses</span>
kubectl get po -o wide
<span class="c1"># generate a &quot;machines&quot; file containing node IP addresses</span>
kubectl get po -o wide <span class="p">|</span> grep nodes <span class="p">|</span> awk <span class="s1">&#39;{print $6}&#39;</span> &gt; machines
<span class="c1"># copy necessary files onto &quot;head&quot; node</span>
scp -i ssh/id_rsa.mpi.pub machines prepare.py train.py start_mpi_train.sh tutorial@<span class="o">[</span>headIP<span class="o">]</span>:~
<span class="c1"># login to head node using ssh</span>
ssh -i ssh/id_rsa.mpi.pub tutorial@<span class="o">[</span>headIP<span class="o">]</span>
<span class="c1"># --------------- in head node ---------------</span>
<span class="c1"># prepare training data</span>
python prepare.py
<span class="c1"># copy training data and dict file to MPI nodes</span>
cat machines <span class="p">|</span> xargs -i scp word_dict.pickle train.py start_mpi_train.sh machines <span class="o">{}</span>:/home/tutorial
<span class="c1"># creat a directory for storing log files</span>
mpirun -hostfile machines -n <span class="m">3</span> mkdir /home/tutorial/logs
<span class="c1"># copy training data to every node</span>
scp train.txt-00000 test.txt-00000 <span class="o">[</span>node1IP<span class="o">]</span>:/home/tutorial
scp train.txt-00001 test.txt-00001 <span class="o">[</span>node2IP<span class="o">]</span>:/home/tutorial
scp train.txt-00002 test.txt-00002 <span class="o">[</span>node3IP<span class="o">]</span>:/home/tutorial
<span class="c1"># start the job</span>
mpirun -hostfile machines -n <span class="m">3</span>  /home/tutorial/start_mpi_train.sh
</pre></div>
</div>
</div>
</div>


           </div>
          </div>
          <footer>
  
235 236 237 238 239 240 241 242 243
    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
      
        <a href="k8s_en.html" class="btn btn-neutral float-right" title="PaddlePaddle On Kubernetes" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
      
      
        <a href="fabric_en.html" class="btn btn-neutral" title="Cluster Training Using Fabric" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
      
    </div>
  
244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295

  <hr/>

  <div role="contentinfo">
    <p>
        &copy; Copyright 2016, PaddlePaddle developers.

    </p>
  </div>
  Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. 

</footer>

        </div>
      </div>

    </section>

  </div>
  


  

    <script type="text/javascript">
        var DOCUMENTATION_OPTIONS = {
            URL_ROOT:'../../../',
            VERSION:'',
            COLLAPSE_INDEX:false,
            FILE_SUFFIX:'.html',
            HAS_SOURCE:  true,
            SOURCELINK_SUFFIX: ".txt",
        };
    </script>
      <script type="text/javascript" src="../../../_static/jquery.js"></script>
      <script type="text/javascript" src="../../../_static/underscore.js"></script>
      <script type="text/javascript" src="../../../_static/doctools.js"></script>
      <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
       
  

  
  
    <script type="text/javascript" src="../../../_static/js/theme.js"></script>
  
  
  <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
  <script src="https://cdn.jsdelivr.net/perfect-scrollbar/0.6.14/js/perfect-scrollbar.jquery.min.js"></script>
  <script src="../../../_static/js/paddle_doc_init.js"></script> 

</body>
</html>