README.md 789 字节
Newer Older
rictjo's avatar
clr  
rictjo 已提交
1
# Simple Group Analysis
rictjo's avatar
package  
rictjo 已提交
2
Decomposes a set of expressions into a group expression.
rictjo's avatar
clr  
rictjo 已提交
3
The toolkit currently offers enrichment analysis, hierarchical
rictjo's avatar
rpls  
rictjo 已提交
4
enrichment analysis, PLS regression and rudimentary factor analysis.
rictjo's avatar
clr  
rictjo 已提交
5 6 7 8
The expression regulation can be studied via a statistical
test that relates it to the observables in the journal file. 
The final p values are then FDR corrected and the resulting
adjusted p values are produced.
rictjo's avatar
init  
rictjo 已提交
9 10 11 12 13

The journal and analyte expression file must be ordered
the same way with respect to the samples that are
positioned on the columns.

rictjo's avatar
rictjo 已提交
14
Visit the active code via :
rictjo's avatar
package  
rictjo 已提交
15 16
https://github.com/richardtjornhammar/impetuous

rictjo's avatar
rictjo 已提交
17
Visit the published code : 
rictjo's avatar
foo  
rictjo 已提交
18
https://doi.org/10.5281/zenodo.2594691
rictjo's avatar
package  
rictjo 已提交
19

rictjo's avatar
rictjo 已提交
20
Cite using :
rictjo's avatar
foo  
rictjo 已提交
21
DOI: 10.5281/zenodo.2594691
rictjo's avatar
rictjo 已提交
22 23 24

Install with :
pip install impetuous-gfa