Added missing wildcard to the `*,cover` coverage annotation.

Coverage creates annotation files by appending ",cover" (with a comma, not a period) to the filename.

When using `coverage -p` to get coverage for test runs in several environments coverage creates files on the form .coverage.hostname.timestamp.

coverage.py creates HTML reports in the htmlcov directory (this tool can also be used with coveralls.io)
http://nedbatchelder.com/code/coverage/
https://pypi.python.org/pypi/coverage

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos
into it.
*.exe.manifest
*.manifest

Example template
```
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<assembly xmlns="urn:schemas-microsoft-com:asm.v1"
manifestVersion="1.0">
<assemblyIdentity
type="win32"
name="SourceCoder"
version="14.2.22.0"
processorArchitecture="x86"
/>
<description>Description</description>
<trustInfo xmlns="urn:schemas-microsoft-com:asm.v3">
<security>
<requestedPrivileges>
<requestedExecutionLevel level="asInvoker" uiAccess="false" />
</requestedPrivileges>
</security>
</trustInfo>
<dependency>
<dependentAssembly>
<assemblyIdentity
type="win32"
name="Microsoft.Windows.Common-Controls"
version="6.0.0.0"
processorArchitecture="x86"
publicKeyToken="6595b64144ccf1df"
language="*"
/>
</dependentAssembly>
</dependency>
<dependency>
<dependentAssembly>
<assemblyIdentity
type="win32"
name="Microsoft.VC90.CRT"
version="9.0.21022.8"
processorArchitecture="x86"
publicKeyToken="1fc8b3b9a1e18e3b"
/>
</dependentAssembly>
</dependency>
</assembly>
```

Rope (https://bitbucket.org/zjes/rope_py3k/overview) is a refactoring tool for Python. It creates temporary files in `.ropeproject` to cache data. These files should be ignored by default.

`.cache` is generated when unittests are run with py.test

This commit also alphabetizes the distribution/packaging section after
separating the directory entries from the file entries.  I left alone
a few entries that I'm not sure about (i.e. *.egg and the
"Mr Developer" section).

Commenting the only ignore that isn't commented.

nosetests.xml is created by the 'nose' test runner when you want xml output, for instance for integration with jenkins.