Fix the K/N stdlib leaking into other common source sets
The Kotlin/Native stdlib was added to the shared-native source sets in order for the IDE to import the stdlib dependency. However, it was added to the '*Implementation' configuration, from where it was also collected for the dependency source set visibility inference algorithm. The current implementation of source sets visibility inference only works for module dependencies and is not quite suitable for local file dependencies. The implementation should likely be fixed, but for now, it's enough to add the dependency directly to the place where the visibility inference results are taken from by the IDE during import, i.e. to the '*ImplementationDependenciesMetadata' configurations. Also, since all tests were flawed by the leakin K/N stdlib, the K2Metadata/Klib compiler mistakenly didn't include its own built-ins to the module dependencies (and everything worked because the K/N built-ins were there). Now that the K/N doesn't leak, the compiler must add its own built-ins.
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