Gradle plugins: update sonarqube and remove protobuf
Since https://jira.sonarsource.com/browse/SONARGRADL-30, we can now safely update to sonarqube plugin v2.2.1. The protobuf gradle plugin is now deprecated - instead of configuring the new plugin supported by Google, this commits drops that part of the gradle build since that proto->java conversion is rarely needed and can be manually run by any member of the team.
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