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TDengine

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T
TDengine
提交 afec60f4 编写于 作者: T tickduan
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上级 f2fce02b
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Showing with 150677 addition and 247 deletion
CMakeLists.txt
浏览文件 @ afec60f4
...@@ -2,7 +2,7 @@ CMAKE_MINIMUM_REQUIRED(VERSION 2.8) ...@@ -2,7 +2,7 @@ CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
IF (CMAKE_VERSION VERSION_LESS 3.0) IF (CMAKE_VERSION VERSION_LESS 3.0)
PROJECT(TDengine CXX) PROJECT(TDengine CXX)
SET(PROJECT_VERSION_MAJOR "${LIB_MAJOR_VERSION}") SET(PROJECT_VERSION_MAJOR "${LIB_MAJOR_VERSION}")
SET(PROJECT_VERSION_MINOR "${LIB_MINOR_VERSION}") SET(PROJECT_VERSION_MINOR "${:_MINOR_VERSION}")
SET(PROJECT_VERSION_PATCH "${LIB_PATCH_VERSION}") SET(PROJECT_VERSION_PATCH "${LIB_PATCH_VERSION}")
SET(PROJECT_VERSION "${LIB_VERSION_STRING}") SET(PROJECT_VERSION "${LIB_VERSION_STRING}")
ELSE () ELSE ()
...@@ -43,11 +43,14 @@ INCLUDE(cmake/version.inc) ...@@ -43,11 +43,14 @@ INCLUDE(cmake/version.inc)
INCLUDE(cmake/install.inc) INCLUDE(cmake/install.inc)
IF (CMAKE_SYSTEM_NAME MATCHES "Linux") IF (CMAKE_SYSTEM_NAME MATCHES "Linux")
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -pipe -Wall -Wshadow -Werror") SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -pipe -Wall ")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -Wall -Wshadow -Werror") SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -Wall")
ENDIF () ENDIF ()
MESSAGE(STATUS "CMAKE_C_FLAGS: ${CMAKE_C_FLAGS}") MESSAGE(STATUS "CMAKE_C_FLAGS: ${CMAKE_C_FLAGS}")
MESSAGE(STATUS "CMAKE_CXX_FLAGS: ${CMAKE_CXX_FLAGS}") MESSAGE(STATUS "CMAKE_CXX_FLAGS: ${CMAKE_CXX_FLAGS}")
MESSAGE(STATUS "COMMON_FLAGS: ${COMMON_FLAGS}")
ADD_SUBDIRECTORY(deps) ADD_SUBDIRECTORY(deps)
ADD_SUBDIRECTORY(src) ADD_SUBDIRECTORY(src)
......
cmake/define.inc
浏览文件 @ afec60f4
...@@ -57,7 +57,7 @@ IF (TD_LINUX_64) ...@@ -57,7 +57,7 @@ IF (TD_LINUX_64)
ADD_DEFINITIONS(-D_M_X64) ADD_DEFINITIONS(-D_M_X64)
ADD_DEFINITIONS(-D_TD_LINUX_64) ADD_DEFINITIONS(-D_TD_LINUX_64)
MESSAGE(STATUS "linux64 is defined") MESSAGE(STATUS "linux64 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -gdwarf-2 -msse4.2 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall -fPIC -gdwarf-2 -msse4.2 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
IF (JEMALLOC_ENABLED) IF (JEMALLOC_ENABLED)
...@@ -70,7 +70,7 @@ IF (TD_LINUX_32) ...@@ -70,7 +70,7 @@ IF (TD_LINUX_32)
ADD_DEFINITIONS(-D_TD_LINUX_32) ADD_DEFINITIONS(-D_TD_LINUX_32)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "linux32 is defined") MESSAGE(STATUS "linux32 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -fsigned-char -munaligned-access -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall - -fPIC -fsigned-char -munaligned-access -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
ENDIF () ENDIF ()
IF (TD_ARM_64) IF (TD_ARM_64)
...@@ -78,7 +78,7 @@ IF (TD_ARM_64) ...@@ -78,7 +78,7 @@ IF (TD_ARM_64)
ADD_DEFINITIONS(-D_TD_ARM_) ADD_DEFINITIONS(-D_TD_ARM_)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "arm64 is defined") MESSAGE(STATUS "arm64 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall - -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
ENDIF () ENDIF ()
IF (TD_ARM_32) IF (TD_ARM_32)
...@@ -86,7 +86,7 @@ IF (TD_ARM_32) ...@@ -86,7 +86,7 @@ IF (TD_ARM_32)
ADD_DEFINITIONS(-D_TD_ARM_) ADD_DEFINITIONS(-D_TD_ARM_)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "arm32 is defined") MESSAGE(STATUS "arm32 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE -Wno-pointer-to-int-cast -Wno-int-to-pointer-cast -Wno-incompatible-pointer-types ") SET(COMMON_FLAGS "-std=gnu99 -Wall - -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE -Wno-pointer-to-int-cast -Wno-int-to-pointer-cast -Wno-incompatible-pointer-types ")
ENDIF () ENDIF ()
IF (TD_MIPS_64) IF (TD_MIPS_64)
...@@ -94,7 +94,7 @@ IF (TD_MIPS_64) ...@@ -94,7 +94,7 @@ IF (TD_MIPS_64)
ADD_DEFINITIONS(-D_TD_MIPS_64) ADD_DEFINITIONS(-D_TD_MIPS_64)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "mips64 is defined") MESSAGE(STATUS "mips64 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall - -fPIC -fsigned-char -fpack-struct=8 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
ENDIF () ENDIF ()
IF (TD_MIPS_32) IF (TD_MIPS_32)
...@@ -102,7 +102,7 @@ IF (TD_MIPS_32) ...@@ -102,7 +102,7 @@ IF (TD_MIPS_32)
ADD_DEFINITIONS(-D_TD_MIPS_32) ADD_DEFINITIONS(-D_TD_MIPS_32)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "mips32 is defined") MESSAGE(STATUS "mips32 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall - -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
ENDIF () ENDIF ()
IF (TD_APLHINE) IF (TD_APLHINE)
...@@ -147,7 +147,7 @@ IF (TD_DARWIN_64) ...@@ -147,7 +147,7 @@ IF (TD_DARWIN_64)
ADD_DEFINITIONS(-D_REENTRANT -D__USE_POSIX -D_LIBC_REENTRANT) ADD_DEFINITIONS(-D_REENTRANT -D__USE_POSIX -D_LIBC_REENTRANT)
ADD_DEFINITIONS(-DUSE_LIBICONV) ADD_DEFINITIONS(-DUSE_LIBICONV)
MESSAGE(STATUS "darwin64 is defined") MESSAGE(STATUS "darwin64 is defined")
SET(COMMON_FLAGS "-std=gnu99 -Wall -Werror -Wno-missing-braces -fPIC -msse4.2 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE") SET(COMMON_FLAGS "-std=gnu99 -Wall - -Wno-missing-braces -fPIC -msse4.2 -D_FILE_OFFSET_BITS=64 -D_LARGE_FILE")
IF (TD_MEMORY_SANITIZER) IF (TD_MEMORY_SANITIZER)
SET(DEBUG_FLAGS "-fsanitize=address -fsanitize=undefined -fno-sanitize-recover=all -fsanitize=float-divide-by-zero -fsanitize=float-cast-overflow -fno-sanitize=null -fno-sanitize=alignment -O0 -g3 -DDEBUG") SET(DEBUG_FLAGS "-fsanitize=address -fsanitize=undefined -fno-sanitize-recover=all -fsanitize=float-divide-by-zero -fsanitize=float-cast-overflow -fno-sanitize=null -fno-sanitize=alignment -O0 -g3 -DDEBUG")
ELSE () ELSE ()
......
deps/CMakeLists.txt
浏览文件 @ afec60f4
...@@ -10,6 +10,8 @@ ADD_SUBDIRECTORY(cJson) ...@@ -10,6 +10,8 @@ ADD_SUBDIRECTORY(cJson)
ADD_SUBDIRECTORY(wepoll) ADD_SUBDIRECTORY(wepoll)
ADD_SUBDIRECTORY(MsvcLibX) ADD_SUBDIRECTORY(MsvcLibX)
ADD_SUBDIRECTORY(rmonotonic) ADD_SUBDIRECTORY(rmonotonic)
ADD_SUBDIRECTORY(SZ)
IF (TD_LINUX AND TD_MQTT) IF (TD_LINUX AND TD_MQTT)
ADD_SUBDIRECTORY(MQTT-C) ADD_SUBDIRECTORY(MQTT-C)
......
deps/SZ/.gitignore 0 → 100644
浏览文件 @ afec60f4
build
compile_commands.json
tags
CMakeCache.txt
cmake-build-debug/
CMakeFiles/
deps/SZ/.travis.yml 0 → 100644
浏览文件 @ afec60f4
sudo: false
language: c
before_install:
- cd test/travis-ci && ./getData.sh && cd -
matrix:
include:
- dist: xenial
os: linux
addons:
apt:
sources:
- ubuntu-toolchain-r-test # For gcc 4.9, 5 and 7
packages:
- gcc-7
- gfortran-7
- zstd
- libzstd1-dev
- exuberant-ctags
- libcunit1-dev
- libnetcdf-dev
- osx_image: xcode11
os: osx
env: PATH=/usr/local/bin:$PATH
install:
- mkdir build
- cd build
- |
if [[ "${TRAVIS_OS_NAME}" != "linux" ]]; then
brew install ctags
brew install cunit
brew upgrade pkg-config
fi
- cmake -DCMAKE_INSTALL_PREFIX=$HOME -DBUILD_TESTS=ON -DBUILD_INTEGRATION_TESTS=ON ..
- make
- make install
- make test
script:
- cd ..
- ./configure && make
- cd example && ./test.sh && cd -
- cd test/travis-ci && ./test.sh && cd -
deps/SZ/CMakeLists.txt 0 → 100644
浏览文件 @ afec60f4
CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
PROJECT(TDengine)
# include
INCLUDE_DIRECTORIES(sz/include)
INCLUDE_DIRECTORIES(zlib/)
INCLUDE_DIRECTORIES(zstd/)
# source
AUX_SOURCE_DIRECTORY(sz/src SRC1)
AUX_SOURCE_DIRECTORY(zlib/ SRC2)
AUX_SOURCE_DIRECTORY(zstd/common SRC3)
AUX_SOURCE_DIRECTORY(zstd/compress SRC4)
AUX_SOURCE_DIRECTORY(zstd/decompress SRC5)
AUX_SOURCE_DIRECTORY(zstd/deprecated SRC6)
AUX_SOURCE_DIRECTORY(zstd/legacy SRC7)
AUX_SOURCE_DIRECTORY(zstd/dictBuilder SRC8)
# archive
ADD_LIBRARY(SZ STATIC ${SRC1} ${SRC2} ${SRC3} ${SRC4} ${SRC5} ${SRC6} ${SRC7} ${SRC8})
deps/SZ/sz/CMakeLists.txt 0 → 100644
浏览文件 @ afec60f4
add_library (SZ
src/ArithmeticCoding.c
src/ByteToolkit.c
src/CacheTable.c
src/callZlib.c
src/CompressElement.c
src/conf.c
src/dataCompression.c
src/dictionary.c
src/DynamicByteArray.c
src/DynamicDoubleArray.c
src/DynamicFloatArray.c
src/DynamicIntArray.c
src/Huffman.c
src/iniparser.c
src/MultiLevelCacheTable.c
src/MultiLevelCacheTableWideInterval.c
src/pastri.c
src/exafelSZ.c
src/rw.c
src/rwf.c
src/sz.c
src/szd_double.c
src/szd_double_pwr.c
src/szd_double_ts.c
src/szd_float.c
src/szd_float_pwr.c
src/szd_float_ts.c
src/szd_int16.c
src/szd_int32.c
src/szd_int64.c
src/szd_int8.c
src/sz_double.c
src/sz_double_pwr.c
src/sz_double_ts.c
src/szd_uint16.c
src/szd_uint32.c
src/szd_uint64.c
src/szd_uint8.c
src/szf.c
src/sz_float.c
src/sz_float_pwr.c
src/sz_float_ts.c
src/sz_int16.c
src/sz_int32.c
src/sz_int64.c
src/sz_int8.c
src/sz_omp.c
src/sz_uint16.c
src/sz_uint32.c
src/sz_uint64.c
src/sz_uint8.c
src/TightDataPointStorageD.c
src/TightDataPointStorageF.c
src/TightDataPointStorageI.c
src/TypeManager.c
src/utility.c
src/VarSet.c
src/sz_stats.c
)
target_include_directories(SZ
PUBLIC
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
$<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}/sz>
)
target_compile_options(SZ
PRIVATE $<$<CONFIG:Debug>:-Wall -Wextra -Wpedantic -Wno-unused-parameter>
)
if(BUILD_PASTRI)
target_compile_definitions(SZ PUBLIC HAVE_PASTRI)
endif()
if(BUILD_TIMECMPR)
target_compile_definitions(SZ PUBLIC HAVE_TIMECMPR)
endif()
if(BUILD_RANDOMACCESS)
target_compile_definitions(SZ PUBLIC HAVE_RANDOMACCESS)
endif()
if(BUILD_FORTRAN)
enable_language(Fortran)
target_sources(SZ PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/src/rw_interface.F90
${CMAKE_CURRENT_SOURCE_DIR}/src/sz_interface.F90
)
endif()
if(BUILD_STATS)
target_compile_definitions(SZ PUBLIC HAVE_WRITESTATS)
endif()
deps/SZ/sz/Makefile.am 0 → 100644
浏览文件 @ afec60f4
#AM_CFLAGS = -I./include -I../zlib
#LDFLAGS=-fPIC -shared
AUTOMAKE_OPTIONS=foreign
if FORTRAN
include_HEADERS=include/MultiLevelCacheTable.h include/MultiLevelCacheTableWideInterval.h include/CacheTable.h include/defines.h\
include/CompressElement.h include/DynamicDoubleArray.h include/rw.h include/conf.h include/dataCompression.h\
include/dictionary.h include/DynamicFloatArray.h include/VarSet.h include/sz.h include/Huffman.h include/ByteToolkit.h include/szf.h\
include/sz_float.h include/sz_double.h include/callZlib.h include/iniparser.h include/TypeManager.h\
include/sz_int8.h include/sz_int16.h include/sz_int32.h include/sz_int64.h include/szd_int8.h include/szd_int16.h include/szd_int32.h include/szd_int64.h\
include/sz_uint8.h include/sz_uint16.h include/sz_uint32.h include/sz_uint64.h include/szd_uint8.h include/szd_uint16.h include/szd_uint32.h include/szd_uint64.h\
include/sz_float_pwr.h include/sz_double_pwr.h include/szd_float.h include/szd_double.h include/szd_float_pwr.h include/szd_double_pwr.h\
include/sz_float_ts.h include/szd_float_ts.h include/sz_double_ts.h include/szd_double_ts.h include/utility.h include/sz_opencl.h\
include/DynamicByteArray.h include/DynamicIntArray.h include/TightDataPointStorageI.h include/TightDataPointStorageD.h include/TightDataPointStorageF.h\
include/pastriD.h include/pastriF.h include/pastriGeneral.h include/pastri.h include/exafelSZ.h include/ArithmeticCoding.h include/sz_omp.h include/sz_stats.h sz.mod rw.mod
lib_LTLIBRARIES=libSZ.la
libSZ_la_CFLAGS=-I./include -I../zlib/ -I../zstd/
if TIMECMPR
libSZ_la_CFLAGS+=-DHAVE_TIMECMPR
endif
if RANDOMACCESS
libSZ_la_CFLAGS+=-DHAVE_RANDOMACCESS
endif
if OPENMP
libSZ_la_CFLAGS+=-fopenmp
endif
libSZ_la_LDFLAGS = -version-info 2:1:0
libSZ_la_LIDADD=../zlib/.libs/libzlib.a ../zstd/.libs/libzstd.a
libSZ_la_SOURCES=src/MultiLevelCacheTable.c src/MultiLevelCacheTableWideInterval.c \
src/ByteToolkit.c src/dataCompression.c src/DynamicIntArray.c src/iniparser.c src/szf.c \
src/CompressElement.c src/DynamicByteArray.c src/rw.c src/utility.c\
src/TightDataPointStorageI.c src/TightDataPointStorageD.c src/TightDataPointStorageF.c \
src/conf.c src/DynamicDoubleArray.c src/rwf.c src/TypeManager.c \
src/dictionary.c src/DynamicFloatArray.c src/VarSet.c src/callZlib.c src/Huffman.c \
src/sz_float.c src/sz_double.c src/sz_int8.c src/sz_int16.c src/sz_int32.c src/sz_int64.c\
src/sz_uint8.c src/sz_uint16.c src/sz_uint32.c src/sz_uint64.c src/szd_uint8.c src/szd_uint16.c src/szd_uint32.c src/szd_uint64.c\
src/szd_float.c src/szd_double.c src/szd_int8.c src/szd_int16.c src/szd_int32.c src/szd_int64.c src/sz.c\
src/sz_float_pwr.c src/sz_double_pwr.c src/szd_float_pwr.c src/szd_double_pwr.c src/ArithmeticCoding.c src/CacheTable.c\
src/sz_interface.F90 src/rw_interface.F90 src/exafelSZ.c
libSZ_la_LINK=$(AM_V_CC)$(LIBTOOL) --tag=FC --mode=link $(FCLD) $(libSZ_la_CFLAGS) -O3 $(libSZ_la_LDFLAGS) -o $(lib_LTLIBRARIES)
else
include_HEADERS=include/MultiLevelCacheTable.h include/MultiLevelCacheTableWideInterval.h include/CacheTable.h include/defines.h\
include/CompressElement.h include/DynamicDoubleArray.h include/rw.h include/conf.h include/dataCompression.h\
include/dictionary.h include/DynamicFloatArray.h include/VarSet.h include/sz.h include/Huffman.h include/ByteToolkit.h\
include/sz_float.h include/sz_double.h include/callZlib.h include/iniparser.h include/TypeManager.h\
include/sz_int8.h include/sz_int16.h include/sz_int32.h include/sz_int64.h include/szd_int8.h include/szd_int16.h include/szd_int32.h include/szd_int64.h\
include/sz_uint8.h include/sz_uint16.h include/sz_uint32.h include/sz_uint64.h include/szd_uint8.h include/szd_uint16.h include/szd_uint32.h include/szd_uint64.h\
include/sz_float_pwr.h include/sz_double_pwr.h include/szd_float.h include/szd_double.h include/szd_float_pwr.h include/szd_double_pwr.h\
include/sz_float_ts.h include/szd_float_ts.h include/sz_double_ts.h include/szd_double_ts.h include/utility.h include/sz_opencl.h\
include/DynamicByteArray.h include/DynamicIntArray.h include/TightDataPointStorageI.h include/TightDataPointStorageD.h include/TightDataPointStorageF.h\
include/pastriD.h include/pastriF.h include/pastriGeneral.h include/pastri.h include/exafelSZ.h include/ArithmeticCoding.h include/sz_omp.h include/sz_stats.h
lib_LTLIBRARIES=libSZ.la
libSZ_la_CFLAGS=-I./include -I../zlib -I../zstd/
if WRITESTATS
libSZ_la_CFLAGS+=-DHAVE_WRITESTATS
endif
if TIMECMPR
libSZ_la_CFLAGS+=-DHAVE_TIMECMPR
endif
if RANDOMACCESS
libSZ_la_CFLAGS+=-DHAVE_RANDOMACCESS
endif
if OPENMP
libSZ_la_CFLAGS+=-fopenmp
endif
libSZ_la_LDFLAGS = -version-info 1:4:0
libSZ_la_LIDADD=../zlib/.libs/libzlib.a ../zlib/.libs/libzstd.a
libSZ_la_SOURCES=src/MultiLevelCacheTable.c src/MultiLevelCacheTableWideInterval.c \
src/ByteToolkit.c src/dataCompression.c src/DynamicIntArray.c src/iniparser.c\
src/CompressElement.c src/DynamicByteArray.c src/rw.c src/utility.c\
src/TightDataPointStorageI.c src/TightDataPointStorageD.c src/TightDataPointStorageF.c \
src/conf.c src/DynamicDoubleArray.c src/TypeManager.c \
src/dictionary.c src/DynamicFloatArray.c src/VarSet.c src/callZlib.c src/Huffman.c \
src/sz_float.c src/sz_double.c src/sz_int8.c src/sz_int16.c src/sz_int32.c src/sz_int64.c\
src/sz_uint8.c src/sz_uint16.c src/sz_uint32.c src/sz_uint64.c src/szd_uint8.c src/szd_uint16.c src/szd_uint32.c src/szd_uint64.c\
src/szd_float.c src/szd_double.c src/szd_int8.c src/szd_int16.c src/szd_int32.c src/szd_int64.c src/sz.c\
src/sz_float_pwr.c src/sz_double_pwr.c src/szd_float_pwr.c src/szd_double_pwr.c src/ArithmeticCoding.c src/exafelSZ.c src/CacheTable.c
if PASTRI
libSZ_la_SOURCES+=src/pastri.c
endif
if OPENMP
libSZ_la_SOURCES+=src/sz_omp.c
endif
if TIMECMPR
libSZ_la_SOURCES+=src/sz_float_ts.c src/szd_float_ts.c src/sz_double_ts.c src/szd_double_ts.c
endif
if WRITESTATS
libSZ_la_SOURCES+=src/sz_stats.c
endif
libSZ_la_LINK= $(AM_V_CC)$(LIBTOOL) --tag=CC --mode=link $(CCLD) $(libSZ_la_CFLAGS) -O3 $(libSZ_la_LDFLAGS) -o $(lib_LTLIBRARIES)
endif
deps/SZ/sz/Makefile.in 0 → 100644
浏览文件 @ afec60f4
此差异已折叠。
deps/SZ/sz/include/ArithmeticCoding.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file ArithmeticCoding.h
* @author Sheng Di
* @date Dec, 2018
* @brief Header file for the ArithmeticCoding.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _ArithmeticCoding_H
#define _ArithmeticCoding_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
#define ONE_FOURTH (0x40000000000) //44 bits are absolutely enough to deal with a large dataset (support at most 16TB per process)
#define ONE_HALF (0x80000000000)
#define THREE_FOURTHS (0xC0000000000)
#define MAX_CODE (0xFFFFFFFFFFF)
#define MAX_INTERVALS 1048576 //the limit to the arithmetic coding (at most 2^(20) intervals)
typedef struct Prob {
size_t low;
size_t high;
int state;
} Prob;
typedef struct AriCoder
{
int numOfRealStates; //the # real states menas the number of states after the optimization of # intervals
int numOfValidStates; //the # valid states means the number of non-zero frequency cells (some states/codes actually didn't appear)
size_t total_frequency;
Prob* cumulative_frequency; //used to encode data more efficiencly
} AriCoder;
void output_bit_1(unsigned int* buf);
void output_bit_0(unsigned int* buf);
unsigned int output_bit_1_plus_pending(int pending_bits);
unsigned int output_bit_0_plus_pending(int pending_bits);
AriCoder *createAriCoder(int numOfStates, int *s, size_t length);
void freeAriCoder(AriCoder *ariCoder);
void ari_init(AriCoder *ariCoder, int *s, size_t length);
unsigned int pad_ariCoder(AriCoder* ariCoder, unsigned char** out);
int unpad_ariCoder(AriCoder** ariCoder, unsigned char* bytes);
unsigned char get_bit(unsigned char* p, int offset);
void ari_encode(AriCoder *ariCoder, int *s, size_t length, unsigned char *out, size_t *outSize);
void ari_decode(AriCoder *ariCoder, unsigned char *s, size_t s_len, size_t targetLength, int *out);
Prob* getCode(AriCoder *ariCoder, size_t scaled_value);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _ArithmeticCoding_H ----- */
deps/SZ/sz/include/ByteToolkit.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file ByteToolkit.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the ByteToolkit.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _ByteToolkit_H
#define _ByteToolkit_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
//ByteToolkit.c
unsigned short bytesToUInt16_bigEndian(unsigned char* bytes);
unsigned int bytesToUInt32_bigEndian(unsigned char* bytes);
unsigned long bytesToUInt64_bigEndian(unsigned char* b);
short bytesToInt16_bigEndian(unsigned char* bytes);
int bytesToInt32_bigEndian(unsigned char* bytes);
long bytesToInt64_bigEndian(unsigned char* b);
int bytesToInt_bigEndian(unsigned char* bytes);
void intToBytes_bigEndian(unsigned char *b, unsigned int num);
void int64ToBytes_bigEndian(unsigned char *b, uint64_t num);
void int32ToBytes_bigEndian(unsigned char *b, uint32_t num);
void int16ToBytes_bigEndian(unsigned char *b, uint16_t num);
long bytesToLong_bigEndian(unsigned char* b);
void longToBytes_bigEndian(unsigned char *b, unsigned long num);
long doubleToOSEndianLong(double value);
int floatToOSEndianInt(float value);
short getExponent_float(float value);
short getPrecisionReqLength_float(float precision);
short getExponent_double(double value);
short getPrecisionReqLength_double(double precision);
unsigned char numberOfLeadingZeros_Int(int i);
unsigned char numberOfLeadingZeros_Long(long i);
unsigned char getLeadingNumbers_Int(int v1, int v2);
unsigned char getLeadingNumbers_Long(long v1, long v2);
short bytesToShort(unsigned char* bytes);
void shortToBytes(unsigned char* b, short value);
int bytesToInt(unsigned char* bytes);
long bytesToLong(unsigned char* bytes);
float bytesToFloat(unsigned char* bytes);
void floatToBytes(unsigned char *b, float num);
double bytesToDouble(unsigned char* bytes);
void doubleToBytes(unsigned char *b, double num);
int extractBytes(unsigned char* byteArray, size_t k, int validLength);
int getMaskRightCode(int m);
int getLeftMovingCode(int kMod8);
int getRightMovingSteps(int kMod8, int resiBitLength);
int getRightMovingCode(int kMod8, int resiBitLength);
short* convertByteDataToShortArray(unsigned char* bytes, size_t byteLength);
unsigned short* convertByteDataToUShortArray(unsigned char* bytes, size_t byteLength);
void convertShortArrayToBytes(short* states, size_t stateLength, unsigned char* bytes);
void convertUShortArrayToBytes(unsigned short* states, size_t stateLength, unsigned char* bytes);
void convertIntArrayToBytes(int* states, size_t stateLength, unsigned char* bytes);
void convertUIntArrayToBytes(unsigned int* states, size_t stateLength, unsigned char* bytes);
void convertLongArrayToBytes(int64_t* states, size_t stateLength, unsigned char* bytes);
void convertULongArrayToBytes(uint64_t* states, size_t stateLength, unsigned char* bytes);
size_t bytesToSize(unsigned char* bytes);
void sizeToBytes(unsigned char* outBytes, size_t size);
void put_codes_to_output(unsigned int buf, int bitSize, unsigned char** p, int* lackBits, size_t *outSize);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _ByteToolkit_H ----- */
deps/SZ/sz/include/CacheTable.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file CacheTable.h
* @author Xiangyu Zou, Tao Lu, Wen Xia, Xuan Wang, Weizhe Zhang, Sheng Di, Dingwen Tao
* @date Jan, 2019
* @brief Header file.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef SZ_MASTER_CACHETABLE_H
#define SZ_MASTER_CACHETABLE_H
#ifdef __cplusplus
extern "C" {
#endif
#include "stdio.h"
#include "stdint.h"
#include <math.h>
extern double* g_CacheTable;
extern uint32_t * g_InverseTable;
extern uint32_t baseIndex;
extern uint32_t topIndex;
extern int bits;
int doubleGetExpo(double d);
int CacheTableGetRequiredBits(double precision, int quantization_intervals);
uint32_t CacheTableGetIndex(float value, int bits);
uint64_t CacheTableGetIndexDouble(double value, int bits);
int CacheTableIsInBoundary(uint32_t index);
void CacheTableBuild(double * table, int count, double smallest, double largest, double precision, int quantization_intervals);
uint32_t CacheTableFind(uint32_t index);
void CacheTableFree();
#ifdef __cplusplus
}
#endif
#endif //SZ_MASTER_CACHETABLE_H
deps/SZ/sz/include/CompressElement.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file CompressElement.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for Compress Elements such as DoubleCompressELement.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#include <stdint.h>
#ifndef _CompressElement_H
#define _CompressElement_H
#ifdef __cplusplus
extern "C" {
#endif
typedef struct DoubleValueCompressElement
{
double data;
long curValue;
unsigned char curBytes[8]; //big_endian
int reqBytesLength;
int resiBitsLength;
} DoubleValueCompressElement;
typedef struct FloatValueCompressElement
{
float data;
int curValue;
unsigned char curBytes[4]; //big_endian
int reqBytesLength;
int resiBitsLength;
} FloatValueCompressElement;
typedef struct LossyCompressionElement
{
int leadingZeroBytes; //0,1,2,or 3
unsigned char integerMidBytes[8];
int integerMidBytes_Length; //they are mid_bits actually
//char curBytes[8];
//int curBytes_Length; //4 for single_precision or 8 for double_precision
int resMidBitsLength;
int residualMidBits;
} LossyCompressionElement;
char* decompressGroupIDArray(unsigned char* bytes, size_t dataLength);
short computeGroupNum_float(float value);
short computeGroupNum_double(double value);
void listAdd_double(double last3CmprsData[3], double value);
void listAdd_float(float last3CmprsData[3], float value);
void listAdd_int(int64_t last3CmprsData[3], int64_t value);
void listAdd_int32(int32_t last3CmprsData[3], int32_t value);
void listAdd_float_group(float *groups, int *flags, char groupNum, float oriValue, float decValue, char* curGroupID);
void listAdd_double_group(double *groups, int *flags, char groupNum, double oriValue, double decValue, char* curGroupID);
int validPrediction_double(double minErr, double precision);
int validPrediction_float(float minErr, float precision);
double* generateGroupErrBounds(int errorBoundMode, double realPrecision, double pwrErrBound);
int generateGroupMaxIntervalCount(double* groupErrBounds);
void new_LossyCompressionElement(LossyCompressionElement *lce, int leadingNum, unsigned char* intMidBytes,
int intMidBytes_Length, int resiMidBitsLength, int resiBits);
void updateLossyCompElement_Double(unsigned char* curBytes, unsigned char* preBytes,
int reqBytesLength, int resiBitsLength, LossyCompressionElement *lce);
void updateLossyCompElement_Float(unsigned char* curBytes, unsigned char* preBytes,
int reqBytesLength, int resiBitsLength, LossyCompressionElement *lce);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _CompressElement_H ----- */
deps/SZ/sz/include/DynamicByteArray.h 0 → 100644
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/**
* @file DynamicByteArray.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for Dynamic Byte Array.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _DynamicByteArray_H
#define _DynamicByteArray_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct DynamicByteArray
{
unsigned char* array;
size_t size;
size_t capacity;
} DynamicByteArray;
void new_DBA(DynamicByteArray **dba, size_t cap);
void convertDBAtoBytes(DynamicByteArray *dba, unsigned char** bytes);
void free_DBA(DynamicByteArray *dba);
unsigned char getDBA_Data(DynamicByteArray *dba, size_t pos);
void addDBA_Data(DynamicByteArray *dba, unsigned char value);
void memcpyDBA_Data(DynamicByteArray *dba, unsigned char* data, size_t length);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _DynamicByteArray_H ----- */
deps/SZ/sz/include/DynamicDoubleArray.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file DynamicDoubleArray.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for Dynamic Double Array.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _DynamicDoubleArray_H
#define _DynamicDoubleArray_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct DynamicDoubleArray
{
double* array;
size_t size;
double capacity;
} DynamicDoubleArray;
void new_DDA(DynamicDoubleArray **dda, size_t cap);
void convertDDAtoDoubles(DynamicDoubleArray *dba, double **data);
void free_DDA(DynamicDoubleArray *dda);
double getDDA_Data(DynamicDoubleArray *dda, size_t pos);
void addDDA_Data(DynamicDoubleArray *dda, double value);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _DynamicDoubleArray_H ----- */
deps/SZ/sz/include/DynamicFloatArray.h 0 → 100644
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/**
* @file DynamicFloatArray.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for Dynamic Float Array.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _DynamicFloatArray_H
#define _DynamicFloatArray_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct DynamicFloatArray
{
float* array;
size_t size;
size_t capacity;
} DynamicFloatArray;
void new_DFA(DynamicFloatArray **dfa, size_t cap);
void convertDFAtoFloats(DynamicFloatArray *dfa, float **data);
void free_DFA(DynamicFloatArray *dfa);
float getDFA_Data(DynamicFloatArray *dfa, size_t pos);
void addDFA_Data(DynamicFloatArray *dfa, float value);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _DynamicFloatArray_H ----- */
deps/SZ/sz/include/DynamicIntArray.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file DynamicIntArray.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for Dynamic Int Array.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _DynamicIntArray_H
#define _DynamicIntArray_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct DynamicIntArray
{
unsigned char* array; //char* (one byte) is enough, don't have to be int*
size_t size;
size_t capacity;
} DynamicIntArray;
void new_DIA(DynamicIntArray **dia, size_t cap);
void convertDIAtoInts(DynamicIntArray *dia, unsigned char **data);
void free_DIA(DynamicIntArray *dia);
int getDIA_Data(DynamicIntArray *dia, size_t pos);
void addDIA_Data(DynamicIntArray *dia, int value);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _DynamicIntArray_H ----- */
deps/SZ/sz/include/Huffman.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file Huffman.h
* @author Sheng Di
* @date Aug., 2016
* @brief Header file for the exponential segment constructor.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _Huffman_H
#define _Huffman_H
#ifdef __cplusplus
extern "C" {
#endif
//Note: when changing the following settings, intvCapacity in sz.h should be changed as well.
//#define allNodes 131072
//#define stateNum 65536
typedef struct node_t {
struct node_t *left, *right;
size_t freq;
char t; //in_node:0; otherwise:1
unsigned int c;
} *node;
typedef struct HuffmanTree {
unsigned int stateNum;
unsigned int allNodes;
struct node_t* pool;
node *qqq, *qq; //the root node of the HuffmanTree is qq[1]
int n_nodes; //n_nodes is for compression
int qend;
unsigned long **code;
unsigned char *cout;
int n_inode; //n_inode is for decompression
int maxBitCount;
} HuffmanTree;
HuffmanTree* createHuffmanTree(int stateNum);
HuffmanTree* createDefaultHuffmanTree();
node new_node(HuffmanTree *huffmanTree, size_t freq, unsigned int c, node a, node b);
node new_node2(HuffmanTree *huffmanTree, unsigned int c, unsigned char t);
void qinsert(HuffmanTree *huffmanTree, node n);
node qremove(HuffmanTree *huffmanTree);
void build_code(HuffmanTree *huffmanTree, node n, int len, unsigned long out1, unsigned long out2);
void init(HuffmanTree *huffmanTree, int *s, size_t length);
void init_static(HuffmanTree *huffmanTree, int *s, size_t length);
void encode(HuffmanTree *huffmanTree, int *s, size_t length, unsigned char *out, size_t *outSize);
void decode(unsigned char *s, size_t targetLength, node t, int *out);
void decode_MSST19(unsigned char *s, size_t targetLength, node t, int *out, int maxBits);
void pad_tree_uchar(HuffmanTree* huffmanTree, unsigned char* L, unsigned char* R, unsigned int* C, unsigned char* t, unsigned int i, node root);
void pad_tree_ushort(HuffmanTree* huffmanTree, unsigned short* L, unsigned short* R, unsigned int* C, unsigned char* t, unsigned int i, node root);
void pad_tree_uint(HuffmanTree* huffmanTree, unsigned int* L, unsigned int* R, unsigned int* C, unsigned char* t, unsigned int i, node root);
unsigned int convert_HuffTree_to_bytes_anyStates(HuffmanTree* huffmanTree, int nodeCount, unsigned char** out);
void unpad_tree_uchar(HuffmanTree* huffmanTree, unsigned char* L, unsigned char* R, unsigned int* C, unsigned char *t, unsigned int i, node root);
void unpad_tree_ushort(HuffmanTree* huffmanTree, unsigned short* L, unsigned short* R, unsigned int* C, unsigned char* t, unsigned int i, node root);
void unpad_tree_uint(HuffmanTree* huffmanTree, unsigned int* L, unsigned int* R, unsigned int* C, unsigned char* t, unsigned int i, node root);
node reconstruct_HuffTree_from_bytes_anyStates(HuffmanTree *huffmanTree, unsigned char* bytes, int nodeCount);
void encode_withTree(HuffmanTree* huffmanTree, int *s, size_t length, unsigned char **out, size_t *outSize);
int encode_withTree_MSST19(HuffmanTree* huffmanTree, int *s, size_t length, unsigned char **out, size_t *outSize);
void decode_withTree(HuffmanTree* huffmanTree, unsigned char *s, size_t targetLength, int *out);
void decode_withTree_MSST19(HuffmanTree* huffmanTree, unsigned char *s, size_t targetLength, int *out, int maxBits);
void SZ_ReleaseHuffman(HuffmanTree* huffmanTree);
#ifdef __cplusplus
}
#endif
#endif
deps/SZ/sz/include/MultiLevelCacheTable.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file MultiLevelCacheTable.h
* @author Xiangyu Zou, Tao Lu, Wen Xia, Xuan Wang, Weizhe Zhang, Sheng Di, Dingwen Tao
* @date Jan, 2019
* @brief Header file.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _MULTILEVELCACHETABLE_H
#define _MULTILEVELCACHETABLE_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdint.h>
#include <memory.h>
#include <stdlib.h>
#include "stdio.h"
typedef struct SubLevelTable{
uint32_t baseIndex;
uint32_t topIndex;
uint32_t* table;
uint8_t expoIndex;
} SubLevelTable;
typedef struct TopLevelTable{
uint8_t bits;
uint8_t baseIndex;
uint8_t topIndex;
struct SubLevelTable* subTables;
float bottomBoundary;
float topBoundary;
} TopLevelTable;
uint8_t MLCT_GetExpoIndex(float value);
uint8_t MLCT_GetRequiredBits(float precision);
uint32_t MLCT_GetMantiIndex(float value, int bits);
float MLTC_RebuildFloat(uint8_t expo, uint32_t manti, int bits);
void MultiLevelCacheTableBuild(struct TopLevelTable* topTable, float* precisionTable, int count, float precision);
uint32_t MultiLevelCacheTableGetIndex(float value, struct TopLevelTable* topLevelTable);
void MultiLevelCacheTableFree(struct TopLevelTable* table);
#ifdef __cplusplus
}
#endif
#endif //_MULTILEVELCACHETABLE_H
deps/SZ/sz/include/MultiLevelCacheTableWideInterval.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file MultiLevelCacheTableWideInterval.h
* @author Xiangyu Zou, Tao Lu, Wen Xia, Xuan Wang, Weizhe Zhang, Sheng Di, Dingwen Tao
* @date Jan, 2019
* @brief Header file for MultiLevelCacheTableWideInterval.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _MULTILEVELCACHETABLEWIDEINTERVAL_H
#define _MULTILEVELCACHETABLEWIDEINTERVAL_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdint.h>
#include <memory.h>
#include <stdlib.h>
#include "stdio.h"
typedef struct SubLevelTableWideInterval{
uint64_t baseIndex;
uint64_t topIndex;
uint16_t* table;
uint16_t expoIndex;
} SubLevelTableWideInterval;
typedef struct TopLevelTableWideInterval{
uint16_t bits;
uint16_t baseIndex;
uint16_t topIndex;
struct SubLevelTableWideInterval* subTables;
double bottomBoundary;
double topBoundary;
} TopLevelTableWideInterval;
void freeTopLevelTableWideInterval(struct TopLevelTableWideInterval* topTable);
uint16_t MLCTWI_GetExpoIndex(double value);
uint16_t MLCTWI_GetRequiredBits(double precision);
uint64_t MLCTWI_GetMantiIndex(double value, int bits);
double MLTCWI_RebuildDouble(uint16_t expo, uint64_t manti, int bits);
void MultiLevelCacheTableWideIntervalBuild(struct TopLevelTableWideInterval* topTable, double* precisionTable, int count, double precision, int plus_bits);
uint32_t MultiLevelCacheTableWideIntervalGetIndex(double value, struct TopLevelTableWideInterval* topLevelTable);
void MultiLevelCacheTableWideIntervalFree(struct TopLevelTableWideInterval* table);
#ifdef __cplusplus
}
#endif
#endif //_MULTILEVELCACHETABLEWIDEINTERVAL_H
deps/SZ/sz/include/TightDataPointStorageD.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file TightDataPointStorageD.h
* @author Sheng Di
* @date April, 2016
* @brief Header file for the tight data point storage (TDPS).
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _TightDataPointStorageD_H
#define _TightDataPointStorageD_H
#ifdef __cplusplus
extern "C" {
#endif
typedef struct TightDataPointStorageD
{
size_t dataSeriesLength;
int allSameData;
double realPrecision;
double medianValue;
char reqLength;
char radExpo; //used to compute reqLength based on segmented precisions in "pw_rel_compression"
double minLogValue;
int stateNum;
int allNodes;
size_t exactDataNum;
double reservedValue;
unsigned char* rtypeArray;
size_t rtypeArray_size;
unsigned char* typeArray; //its size is dataSeriesLength/4 (or xxx/4+1)
size_t typeArray_size;
unsigned char* leadNumArray; //its size is exactDataNum/4 (or exactDataNum/4+1)
size_t leadNumArray_size;
unsigned char* exactMidBytes;
size_t exactMidBytes_size;
unsigned char* residualMidBits;
size_t residualMidBits_size;
unsigned int intervals;
unsigned char isLossless; //a mark to denote whether it's lossless compression (1 is yes, 0 is no)
size_t segment_size;
unsigned char* pwrErrBoundBytes;
int pwrErrBoundBytes_size;
unsigned char* raBytes;
size_t raBytes_size;
unsigned char plus_bits;
unsigned char max_bits;
} TightDataPointStorageD;
void new_TightDataPointStorageD_Empty(TightDataPointStorageD **self);
int new_TightDataPointStorageD_fromFlatBytes(TightDataPointStorageD **self, unsigned char* flatBytes, size_t flatBytesLength);
void new_TightDataPointStorageD(TightDataPointStorageD **self,
size_t dataSeriesLength, size_t exactDataNum,
int* type, unsigned char* exactMidBytes, size_t exactMidBytes_size,
unsigned char* leadNumIntArray, //leadNumIntArray contains readable numbers....
unsigned char* resiMidBits, size_t resiMidBits_size,
unsigned char resiBitLength,
double realPrecision, double medianValue, char reqLength, unsigned int intervals,
unsigned char* pwrErrBoundBytes, size_t pwrErrBoundBytes_size, unsigned char radExpo);
void new_TightDataPointStorageD2(TightDataPointStorageD **self,
size_t dataSeriesLength, size_t exactDataNum,
int* type, unsigned char* exactMidBytes, size_t exactMidBytes_size,
unsigned char* leadNumIntArray, //leadNumIntArray contains readable numbers....
unsigned char* resiMidBits, size_t resiMidBits_size,
unsigned char* resiBitLength, size_t resiBitLengthSize,
double realPrecision, double medianValue, char reqLength, unsigned int intervals,
unsigned char* pwrErrBoundBytes, size_t pwrErrBoundBytes_size, unsigned char radExpo);
void convertTDPStoBytes_double(TightDataPointStorageD* tdps, unsigned char* bytes, unsigned char* dsLengthBytes, unsigned char sameByte);
void convertTDPStoBytes_double_reserve(TightDataPointStorageD* tdps, unsigned char* bytes, unsigned char* dsLengthBytes, unsigned char sameByte);
void convertTDPStoFlatBytes_double(TightDataPointStorageD *tdps, unsigned char** bytes, size_t *size);
void convertTDPStoFlatBytes_double_args(TightDataPointStorageD *tdps, unsigned char* bytes, size_t *size);
void free_TightDataPointStorageD(TightDataPointStorageD *tdps);
void free_TightDataPointStorageD2(TightDataPointStorageD *tdps);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _TightDataPointStorageD_H ----- */
deps/SZ/sz/include/TightDataPointStorageF.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file TightDataPointStorageF.h
* @author Sheng Di and Dingwen Tao
* @date Aug, 2016
* @brief Header file for the tight data point storage (TDPS).
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _TightDataPointStorageF_H
#define _TightDataPointStorageF_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct TightDataPointStorageF
{
size_t dataSeriesLength;
int allSameData;
double realPrecision; //it's used as the pwrErrBoundRatio when errBoundMode==PW_REL
float medianValue;
char reqLength;
char radExpo; //used to compute reqLength based on segmented precisions in "pw_rel_compression"
int stateNum;
int allNodes;
size_t exactDataNum;
float reservedValue;
unsigned char* rtypeArray;
size_t rtypeArray_size;
float minLogValue;
unsigned char* typeArray; //its size is dataSeriesLength/4 (or xxx/4+1)
size_t typeArray_size;
unsigned char* leadNumArray; //its size is exactDataNum/4 (or exactDataNum/4+1)
size_t leadNumArray_size;
unsigned char* exactMidBytes;
size_t exactMidBytes_size;
unsigned char* residualMidBits;
size_t residualMidBits_size;
unsigned int intervals; //quantization_intervals
unsigned char isLossless; //a mark to denote whether it's lossless compression (1 is yes, 0 is no)
size_t segment_size;
unsigned char* pwrErrBoundBytes;
int pwrErrBoundBytes_size;
unsigned char* raBytes;
size_t raBytes_size;
unsigned char plus_bits;
unsigned char max_bits;
} TightDataPointStorageF;
void new_TightDataPointStorageF_Empty(TightDataPointStorageF **self);
int new_TightDataPointStorageF_fromFlatBytes(TightDataPointStorageF **self, unsigned char* flatBytes, size_t flatBytesLength);
void new_TightDataPointStorageF(TightDataPointStorageF **self,
size_t dataSeriesLength, size_t exactDataNum,
int* type, unsigned char* exactMidBytes, size_t exactMidBytes_size,
unsigned char* leadNumIntArray, //leadNumIntArray contains readable numbers....
unsigned char* resiMidBits, size_t resiMidBits_size,
unsigned char resiBitLength,
double realPrecision, float medianValue, char reqLength, unsigned int intervals,
unsigned char* pwrErrBoundBytes, size_t pwrErrBoundBytes_size, unsigned char radExpo);
/**
* This function is designed for first-version of the point-wise relative error bound (developed by Sheng Di for TPDS18 paper)
*
* */
void new_TightDataPointStorageF2(TightDataPointStorageF **self,
size_t dataSeriesLength, size_t exactDataNum,
int* type, unsigned char* exactMidBytes, size_t exactMidBytes_size,
unsigned char* leadNumIntArray, //leadNumIntArray contains readable numbers....
unsigned char* resiMidBits, size_t resiMidBits_size,
unsigned char* resiBitLength, size_t resiBitLengthSize,
double realPrecision, float medianValue, char reqLength, unsigned int intervals,
unsigned char* pwrErrBoundBytes, size_t pwrErrBoundBytes_size, unsigned char radExpo);
void convertTDPStoBytes_float(TightDataPointStorageF* tdps, unsigned char* bytes, unsigned char* dsLengthBytes, unsigned char sameByte);
void convertTDPStoBytes_float_reserve(TightDataPointStorageF* tdps, unsigned char* bytes, unsigned char* dsLengthBytes, unsigned char sameByte);
void convertTDPStoFlatBytes_float(TightDataPointStorageF *tdps, unsigned char** bytes, size_t *size);
void convertTDPStoFlatBytes_float_args(TightDataPointStorageF *tdps, unsigned char* bytes, size_t *size);
void free_TightDataPointStorageF(TightDataPointStorageF *tdps);
void free_TightDataPointStorageF2(TightDataPointStorageF *tdps);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _TightDataPointStorageF_H ----- */
deps/SZ/sz/include/TightDataPointStorageI.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file TightDataPointStorageI.h
* @author Sheng Di and Dingwen Tao
* @date Aug, 2017
* @brief Header file for the tight data point storage (TDPS).
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _TightDataPointStorageI_H
#define _TightDataPointStorageI_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct TightDataPointStorageI
{
size_t dataSeriesLength;
int allSameData;
double realPrecision; //it's used as the pwrErrBoundRatio when errBoundMode==PW_REL
size_t exactDataNum;
long minValue;
int exactByteSize;
int dataTypeSize; //the size of data type, e.g., it's 4 when data type is int32_t
int stateNum;
int allNodes;
unsigned char* typeArray; //its size is dataSeriesLength/4 (or xxx/4+1)
size_t typeArray_size;
unsigned char* exactDataBytes;
size_t exactDataBytes_size;
unsigned int intervals; //quantization_intervals
unsigned char isLossless; //a mark to denote whether it's lossless compression (1 is yes, 0 is no)
} TightDataPointStorageI;
int computeRightShiftBits(int exactByteSize, int dataType);
int convertDataTypeSizeCode(int dataTypeSizeCode);
int convertDataTypeSize(int dataTypeSize);
void new_TightDataPointStorageI_Empty(TightDataPointStorageI **self);
int new_TightDataPointStorageI_fromFlatBytes(TightDataPointStorageI **self, unsigned char* flatBytes, size_t flatBytesLength);
void new_TightDataPointStorageI(TightDataPointStorageI **self,
size_t dataSeriesLength, size_t exactDataNum, int byteSize,
int* type, unsigned char* exactDataBytes, size_t exactDataBytes_size,
double realPrecision, long minValue, int intervals, int dataType);
void convertTDPStoBytes_int(TightDataPointStorageI* tdps, unsigned char* bytes, unsigned char sameByte);
void convertTDPStoFlatBytes_int(TightDataPointStorageI *tdps, unsigned char** bytes, size_t *size);
void convertTDPStoFlatBytes_int_args(TightDataPointStorageI *tdps, unsigned char* bytes, size_t *size);
void free_TightDataPointStorageI(TightDataPointStorageI *tdps);
void free_TightDataPointStorageI2(TightDataPointStorageI *tdps);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _TightDataPointStorageI_H ----- */
deps/SZ/sz/include/TypeManager.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file TypeManager.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the TypeManager.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _TypeManager_H
#define _TypeManager_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
#include <stdint.h>
//TypeManager.c
size_t convertIntArray2ByteArray_fast_1b(unsigned char* intArray, size_t intArrayLength, unsigned char **result);
size_t convertIntArray2ByteArray_fast_1b_to_result(unsigned char* intArray, size_t intArrayLength, unsigned char *result);
void convertByteArray2IntArray_fast_1b(size_t intArrayLength, unsigned char* byteArray, size_t byteArrayLength, unsigned char **intArray);
size_t convertIntArray2ByteArray_fast_2b(unsigned char* timeStepType, size_t timeStepTypeLength, unsigned char **result);
size_t convertIntArray2ByteArray_fast_2b_inplace(unsigned char* timeStepType, size_t timeStepTypeLength, unsigned char *result);
void convertByteArray2IntArray_fast_2b(size_t stepLength, unsigned char* byteArray, size_t byteArrayLength, unsigned char **intArray);
size_t convertIntArray2ByteArray_fast_3b(unsigned char* timeStepType, size_t timeStepTypeLength, unsigned char **result);
void convertByteArray2IntArray_fast_3b(size_t stepLength, unsigned char* byteArray, size_t byteArrayLength, unsigned char **intArray);
int getLeftMovingSteps(size_t k, unsigned char resiBitLength);
size_t convertIntArray2ByteArray_fast_dynamic(unsigned char* timeStepType, unsigned char resiBitLength, size_t nbEle, unsigned char **bytes);
size_t convertIntArray2ByteArray_fast_dynamic2(unsigned char* timeStepType, unsigned char* resiBitLength, size_t resiBitLengthLength, unsigned char **bytes);
int computeBitNumRequired(size_t dataLength);
void decompressBitArraybySimpleLZ77(int** result, unsigned char* bytes, size_t bytesLength, size_t totalLength, int validLength);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _TypeManager_H ----- */
deps/SZ/sz/include/VarSet.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file VarSet.h
* @author Sheng Di
* @date July, 2016
* @brief Header file for the Variable.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _VarSet_H
#define _VarSet_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
typedef struct sz_multisteps
{
char compressionType;
int predictionMode;
int lastSnapshotStep; //the previous snapshot step
unsigned int currentStep; //current time step of the execution/simulation
//void* ori_data; //original data pointer, which serve as the key for retrieving hist_data
void* hist_data; //historical data in past time steps
} sz_multisteps;
typedef struct SZ_Variable
{
unsigned char var_id;
char* varName;
char compressType; //102 means HZ; 101 means SZ
int dataType; //SZ_FLOAT or SZ_DOUBLE
size_t r5;
size_t r4;
size_t r3;
size_t r2;
size_t r1;
int errBoundMode;
double absErrBound;
double relBoundRatio;
double pwRelBoundRatio;
void* data;
sz_multisteps *multisteps;
unsigned char* compressedBytes;
size_t compressedSize;
struct SZ_Variable* next;
} SZ_Variable;
typedef struct SZ_VarSet
{
unsigned short count;
struct SZ_Variable *header;
struct SZ_Variable *lastVar;
} SZ_VarSet;
void free_Variable_keepOriginalData(SZ_Variable* v);
void free_Variable_keepCompressedBytes(SZ_Variable* v);
void free_Variable_all(SZ_Variable* v);
void SZ_batchAddVar(int var_id, char* varName, int dataType, void* data,
int errBoundMode, double absErrBound, double relBoundRatio, double pwRelBoundRatio,
size_t r5, size_t r4, size_t r3, size_t r2, size_t r1);
int SZ_batchDelVar_vset(SZ_VarSet* vset, char* varName);
int SZ_batchDelVar(char* varName);
int SZ_batchDelVar_ID_vset(SZ_VarSet* vset, int var_id);
int SZ_batchDelVar_ID(int var_id);
SZ_Variable* SZ_searchVar(char* varName);
void* SZ_getVarData(char* varName, size_t *r5, size_t *r4, size_t *r3, size_t *r2, size_t *r1);
void free_VarSet_vset(SZ_VarSet *vset, int mode);
void SZ_freeVarSet(int mode);
void free_multisteps(sz_multisteps* multisteps);
int checkVarID(unsigned char cur_var_id, unsigned char* var_ids, int var_count);
SZ_Variable* SZ_getVariable(int var_id);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _VarSet_H ----- */
deps/SZ/sz/include/callZlib.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file callZlib.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the callZlib.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _CallZlib_H
#define _CallZlib_H
#ifdef __cplusplus
extern "C" {
#endif
//#define SZ_ZLIB_BUFFER_SIZE 1048576
#define SZ_ZLIB_BUFFER_SIZE 65536
#include <stdio.h>
int isZlibFormat(unsigned char magic1, unsigned char magic2);
//callZlib.c
unsigned long zlib_compress(unsigned char* data, unsigned long dataLength, unsigned char** compressBytes, int level);
unsigned long zlib_compress2(unsigned char* data, unsigned long dataLength, unsigned char** compressBytes, int level);
unsigned long zlib_compress3(unsigned char* data, unsigned long dataLength, unsigned char* compressBytes, int level);
unsigned long zlib_compress4(unsigned char* data, unsigned long dataLength, unsigned char** compressBytes, int level);
unsigned long zlib_compress5(unsigned char* data, unsigned long dataLength, unsigned char** compressBytes, int level);
unsigned long zlib_uncompress4(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData, unsigned long targetOriSize);
unsigned long zlib_uncompress5(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData, unsigned long targetOriSize);
unsigned long zlib_uncompress(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData, unsigned long targetOriSize);
unsigned long zlib_uncompress2(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData, unsigned long targetOriSize);
unsigned long zlib_uncompress3(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData, unsigned long targetOriSize);
unsigned long zlib_uncompress65536bytes(unsigned char* compressBytes, unsigned long cmpSize, unsigned char** oriData);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _CallZlib_H ----- */
deps/SZ/sz/include/conf.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file conf.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the conf.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _Conf_H
#define _Conf_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
//conf.c
void updateQuantizationInfo(int quant_intervals);
int SZ_ReadConf(const char* sz_cfgFile);
int SZ_LoadConf(const char* sz_cfgFile);
int checkVersion(char* version);
int computeVersion(int major, int minor, int revision);
int checkVersion2(char* version);
void initSZ_TSC();
unsigned int roundUpToPowerOf2(unsigned int base);
double computeABSErrBoundFromPSNR(double psnr, double threshold, double value_range);
double computeABSErrBoundFromNORM_ERR(double normErr, size_t nbEle);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _Conf_H ----- */
deps/SZ/sz/include/dataCompression.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file dataCompression.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the dataCompression.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _DataCompression_H
#define _DataCompression_H
#ifdef __cplusplus
extern "C" {
#endif
#include "sz.h"
#include <stdio.h>
#include <stdbool.h>
#define computeMinMax(data) \
for(i=1;i<size;i++)\
{\
data_ = data[i];\
if(min>data_)\
min = data_;\
else if(max<data_)\
max = data_;\
}\
//dataCompression.c
int computeByteSizePerIntValue(long valueRangeSize);
long computeRangeSize_int(void* oriData, int dataType, size_t size, int64_t* valueRangeSize);
double computeRangeSize_double(double* oriData, size_t size, double* valueRangeSize, double* medianValue);
float computeRangeSize_float(float* oriData, size_t size, float* valueRangeSize, float* medianValue);
float computeRangeSize_float_MSST19(float* oriData, size_t size, float* valueRangeSize, float* medianValue, unsigned char * signs, bool* positive, float* nearZero);
double computeRangeSize_double_MSST19(double* oriData, size_t size, double* valueRangeSize, double* medianValue, unsigned char * signs, bool* positive, double* nearZero);
double computeRangeSize_double_subblock(double* oriData, double* valueRangeSize, double* medianValue,
size_t r5, size_t r4, size_t r3, size_t r2, size_t r1,
size_t s5, size_t s4, size_t s3, size_t s2, size_t s1,
size_t e5, size_t e4, size_t e3, size_t e2, size_t e1);
float computeRangeSize_float_subblock(float* oriData, float* valueRangeSize, float* medianValue,
size_t r5, size_t r4, size_t r3, size_t r2, size_t r1,
size_t s5, size_t s4, size_t s3, size_t s2, size_t s1,
size_t e5, size_t e4, size_t e3, size_t e2, size_t e1);
double min_d(double a, double b);
double max_d(double a, double b);
float min_f(float a, float b);
float max_f(float a, float b);
double getRealPrecision_double(double valueRangeSize, int errBoundMode, double absErrBound, double relBoundRatio, int *status);
double getRealPrecision_float(float valueRangeSize, int errBoundMode, double absErrBound, double relBoundRatio, int *status);
double getRealPrecision_int(long valueRangeSize, int errBoundMode, double absErrBound, double relBoundRatio, int *status);
void symTransform_8bytes(unsigned char data[8]);
void symTransform_2bytes(unsigned char data[2]);
void symTransform_4bytes(unsigned char data[4]);
void compressInt8Value(int8_t tgtValue, int8_t minValue, int byteSize, unsigned char* bytes);
void compressInt16Value(int16_t tgtValue, int16_t minValue, int byteSize, unsigned char* bytes);
void compressInt32Value(int32_t tgtValue, int32_t minValue, int byteSize, unsigned char* bytes);
void compressInt64Value(int64_t tgtValue, int64_t minValue, int byteSize, unsigned char* bytes);
void compressUInt8Value(uint8_t tgtValue, uint8_t minValue, int byteSize, unsigned char* bytes);
void compressUInt16Value(uint16_t tgtValue, uint16_t minValue, int byteSize, unsigned char* bytes);
void compressUInt32Value(uint32_t tgtValue, uint32_t minValue, int byteSize, unsigned char* bytes);
void compressUInt64Value(uint64_t tgtValue, uint64_t minValue, int byteSize, unsigned char* bytes);
void compressSingleFloatValue(FloatValueCompressElement *vce, float tgtValue, float precision, float medianValue,
int reqLength, int reqBytesLength, int resiBitsLength);
void compressSingleFloatValue_MSST19(FloatValueCompressElement *vce, float tgtValue, float precision, int reqLength, int reqBytesLength, int resiBitsLength);
void compressSingleDoubleValue(DoubleValueCompressElement *vce, double tgtValue, double precision, double medianValue,
int reqLength, int reqBytesLength, int resiBitsLength);
void compressSingleDoubleValue_MSST19(DoubleValueCompressElement *vce, double tgtValue, double precision, int reqLength, int reqBytesLength, int resiBitsLength);
int compIdenticalLeadingBytesCount_double(unsigned char* preBytes, unsigned char* curBytes);
int compIdenticalLeadingBytesCount_float(unsigned char* preBytes, unsigned char* curBytes);
void addExactData(DynamicByteArray *exactMidByteArray, DynamicIntArray *exactLeadNumArray,
DynamicIntArray *resiBitArray, LossyCompressionElement *lce);
int getPredictionCoefficients(int layers, int dimension, int **coeff_array, int *status);
int computeBlockEdgeSize_3D(int segmentSize);
int computeBlockEdgeSize_2D(int segmentSize);
int initRandomAccessBytes(unsigned char* raBytes);
int generateLossyCoefficients_float(float* oriData, double precision, size_t nbEle, int* reqBytesLength, int* resiBitsLength, float* medianValue, float* decData);
int compressExactDataArray_float(float* oriData, double precision, size_t nbEle, unsigned char** leadArray, unsigned char** midArray, unsigned char** resiArray,
int reqLength, int reqBytesLength, int resiBitsLength, float medianValue);
void decompressExactDataArray_float(unsigned char* leadNum, unsigned char* exactMidBytes, unsigned char* residualMidBits, size_t nbEle, int reqLength, float medianValue, float** decData);
int generateLossyCoefficients_double(double* oriData, double precision, size_t nbEle, int* reqBytesLength, int* resiBitsLength, double* medianValue, double* decData);
int compressExactDataArray_double(double* oriData, double precision, size_t nbEle, unsigned char** leadArray, unsigned char** midArray, unsigned char** resiArray,
int reqLength, int reqBytesLength, int resiBitsLength, double medianValue);
void decompressExactDataArray_double(unsigned char* leadNum, unsigned char* exactMidBytes, unsigned char* residualMidBits, size_t nbEle, int reqLength, double medianValue, double** decData);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _DataCompression_H ----- */
deps/SZ/sz/include/defines.h 0 → 100644
浏览文件 @ afec60f4
/**
* @file defines.h
* @author Sheng Di
* @date July, 2019
* @brief Header file for the dataCompression.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _SZ_DEFINES_H
#define _SZ_DEFINES_H
#define SZ_VERNUM 0x0200
#define SZ_VER_MAJOR 2
#define SZ_VER_MINOR 1
#define SZ_VER_BUILD 12
#define SZ_VER_REVISION 0
#define PASTRI 103
#define HZ 102 //deprecated
#define SZ 101
#define SZ_Transpose 104
//prediction mode of temporal dimension based compression
#define SZ_PREVIOUS_VALUE_ESTIMATE 0
#define MIN_NUM_OF_ELEMENTS 20 //if the # elements <= 20, skip the compression
#define ABS 0
#define REL 1
#define VR_REL 1 //alternative name to REL
#define ABS_AND_REL 2
#define ABS_OR_REL 3
#define PSNR 4
#define NORM 5
#define PW_REL 10
#define ABS_AND_PW_REL 11
#define ABS_OR_PW_REL 12
#define REL_AND_PW_REL 13
#define REL_OR_PW_REL 14
#define SZ_FLOAT 0
#define SZ_DOUBLE 1
#define SZ_UINT8 2
#define SZ_INT8 3
#define SZ_UINT16 4
#define SZ_INT16 5
#define SZ_UINT32 6
#define SZ_INT32 7
#define SZ_UINT64 8
#define SZ_INT64 9
#define LITTLE_ENDIAN_DATA 0 //refers to the endian type of the data read from the disk
#define BIG_ENDIAN_DATA 1 //big_endian (ppc, max, etc.) ; little_endian (x86, x64, etc.)
#define LITTLE_ENDIAN_SYSTEM 0 //refers to the endian type of the system
#define BIG_ENDIAN_SYSTEM 1
#define DynArrayInitLen 1024
#define MIN_ZLIB_DEC_ALLOMEM_BYTES 1000000
//#define maxRangeRadius 32768
//#define maxRangeRadius 1048576//131072
#define SZ_BEST_SPEED 0
#define SZ_BEST_COMPRESSION 1
#define SZ_DEFAULT_COMPRESSION 2
#define SZ_TEMPORAL_COMPRESSION 3
#define SZ_NO_REGRESSION 0
#define SZ_WITH_LINEAR_REGRESSION 1
#define SZ_PWR_MIN_TYPE 0
#define SZ_PWR_AVG_TYPE 1
#define SZ_PWR_MAX_TYPE 2
#define SZ_FORCE_SNAPSHOT_COMPRESSION 0
#define SZ_FORCE_TEMPORAL_COMPRESSION 1
#define SZ_PERIO_TEMPORAL_COMPRESSION 2
//SUCCESS returning status
#define SZ_SCES 0 //successful
#define SZ_NSCS -1 //Not successful
#define SZ_FERR -2 //Failed to open input file
#define SZ_TERR -3 //wrong data type (should be only float or double)
#define SZ_DERR -4 //dimension error
#define SZ_MERR -5 //sz_mode error
#define SZ_BERR -6 //bound-mode error (should be only ABS, REL, ABS_AND_REL, ABS_OR_REL, or PW_REL)
#define SZ_MAINTAIN_VAR_DATA 0
#define SZ_DESTROY_WHOLE_VARSET 1
#define GROUP_COUNT 16 //2^{16}=65536
#define MetaDataByteLength 28
#define MetaDataByteLength_double 36 //meta data length for double type
#define numOfBufferedSteps 1 //the number of time steps in the buffer
#define GZIP_COMPRESSOR 0 //i.e., ZLIB_COMPRSSOR
#define ZSTD_COMPRESSOR 1
#endif /* _SZ_DEFINES_H */
deps/SZ/sz/include/dictionary.h 0 → 100644
浏览文件 @ afec60f4
/*-------------------------------------------------------------------------*/
/**
@file dictionary.h
@author N. Devillard
@brief Implements a dictionary for string variables.
This module implements a simple dictionary object, i.e. a list
of string/string associations. This object is useful to store e.g.
informations retrieved from a configuration file (ini files).
*/
/*--------------------------------------------------------------------------*/
#ifndef _DICTIONARY_H_
#define _DICTIONARY_H_
/*---------------------------------------------------------------------------
Includes
---------------------------------------------------------------------------*/
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
/*---------------------------------------------------------------------------
New types
---------------------------------------------------------------------------*/
#ifdef __cplusplus
extern "C" {
#endif
/*-------------------------------------------------------------------------*/
/**
@brief Dictionary object
This object contains a list of string/string associations. Each
association is identified by a unique string key. Looking up values
in the dictionary is speeded up by the use of a (hopefully collision-free)
hash function.
*/
/*-------------------------------------------------------------------------*/
typedef struct _dictionary_ {
int n ; /** Number of entries in dictionary */
int size ; /** Storage size */
char ** val ; /** List of string values */
char ** key ; /** List of string keys */
unsigned * hash ; /** List of hash values for keys */
} dictionary ;
/*---------------------------------------------------------------------------
Function prototypes
---------------------------------------------------------------------------*/
/*-------------------------------------------------------------------------*/
/**
@brief Compute the hash key for a string.
@param key Character string to use for key.
@return 1 unsigned int on at least 32 bits.
This hash function has been taken from an Article in Dr Dobbs Journal.
This is normally a collision-free function, distributing keys evenly.
The key is stored anyway in the struct so that collision can be avoided
by comparing the key itself in last resort.
*/
/*--------------------------------------------------------------------------*/
unsigned dictionary_hash(const char * key);
/*-------------------------------------------------------------------------*/
/**
@brief Create a new dictionary object.
@param size Optional initial size of the dictionary.
@return 1 newly allocated dictionary objet.
This function allocates a new dictionary object of given size and returns
it. If you do not know in advance (roughly) the number of entries in the
dictionary, give size=0.
*/
/*--------------------------------------------------------------------------*/
dictionary * dictionary_new(int size);
/*-------------------------------------------------------------------------*/
/**
@brief Delete a dictionary object
@param d dictionary object to deallocate.
@return void
Deallocate a dictionary object and all memory associated to it.
*/
/*--------------------------------------------------------------------------*/
void dictionary_del(dictionary * vd);
/*-------------------------------------------------------------------------*/
/**
@brief Get a value from a dictionary.
@param d dictionary object to search.
@param key Key to look for in the dictionary.
@param def Default value to return if key not found.
@return 1 pointer to internally allocated character string.
This function locates a key in a dictionary and returns a pointer to its
value, or the passed 'def' pointer if no such key can be found in
dictionary. The returned character pointer points to data internal to the
dictionary object, you should not try to free it or modify it.
*/
/*--------------------------------------------------------------------------*/
char * dictionary_get(dictionary * d, const char * key, char * def);
/*-------------------------------------------------------------------------*/
/**
@brief Set a value in a dictionary.
@param d dictionary object to modify.
@param key Key to modify or add.
@param val Value to add.
@return int 0 if Ok, anything else otherwise
If the given key is found in the dictionary, the associated value is
replaced by the provided one. If the key cannot be found in the
dictionary, it is added to it.
It is Ok to provide a NULL value for val, but NULL values for the dictionary
or the key are considered as errors: the function will return immediately
in such a case.
Notice that if you dictionary_set a variable to NULL, a call to
dictionary_get will return a NULL value: the variable will be found, and
its value (NULL) is returned. In other words, setting the variable
content to NULL is equivalent to deleting the variable from the
dictionary. It is not possible (in this implementation) to have a key in
the dictionary without value.
This function returns non-zero in case of failure.
*/
/*--------------------------------------------------------------------------*/
int dictionary_set(dictionary * vd, const char * key, const char * val);
/*-------------------------------------------------------------------------*/
/**
@brief Delete a key in a dictionary
@param d dictionary object to modify.
@param key Key to remove.
@return void
This function deletes a key in a dictionary. Nothing is done if the
key cannot be found.
*/
/*--------------------------------------------------------------------------*/
void dictionary_unset(dictionary * d, const char * key);
/*-------------------------------------------------------------------------*/
/**
@brief Dump a dictionary to an opened file pointer.
@param d Dictionary to dump
@param f Opened file pointer.
@return void
Dumps a dictionary onto an opened file pointer. Key pairs are printed out
as @c [Key]=[Value], one per line. It is Ok to provide stdout or stderr as
output file pointers.
*/
/*--------------------------------------------------------------------------*/
void dictionary_dump(dictionary * d, FILE * out);
#ifdef __cplusplus
}
#endif
#endif
deps/SZ/sz/include/exafelSZ.h 0 → 100644
浏览文件 @ afec60f4
#ifndef EXAFELSZ_H
#define EXAFELSZ_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdint.h>
#include <stdlib.h>
typedef struct exafelSZ_params{
//uint8_t *peaks;
uint16_t *peaksSegs;
uint16_t *peaksRows;
uint16_t *peaksCols;
uint64_t numPeaks;
uint8_t *calibPanel;
uint8_t binSize; //Binning: (pr->binSize x pr->binSize) to (1 x 1)
double tolerance; //SZ pr->tolerance
uint8_t szDim; //1D/2D/3D compression/decompression
//uint8_t szBlockSize; //Currently unused
uint8_t peakSize; //MUST BE ODD AND NOT EVEN! Each peak will have size of: (peakSize x peakSize)
// uint64_t nEvents;
// uint64_t panels;
// uint64_t rows;
// uint64_t cols;
//CALCULATED VARIBALES:
uint64_t binnedRows;
uint64_t binnedCols;
uint8_t peakRadius; //Will be calculated using peakSize
} exafelSZ_params;
void exafelSZ_params_process(exafelSZ_params*pr, size_t panels, size_t rows, size_t cols);
void exafelSZ_params_checkDecomp(exafelSZ_params*pr, size_t panels, size_t rows, size_t cols);
void exafelSZ_params_checkComp(exafelSZ_params*pr, size_t panels, size_t rows, size_t cols);
unsigned char * exafelSZ_Compress(void* _pr,
void* _origData,
size_t events, size_t panels, size_t rows, size_t cols,
size_t *compressedSize);
void* exafelSZ_Decompress(void *_pr,
unsigned char*_compressedBuffer,
size_t events, size_t panels, size_t rows, size_t cols,
size_t compressedSize);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _EXAFELSZ_H ----- */
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/*-------------------------------------------------------------------------*/
/**
@file iniparser.h
@author N. Devillard
@brief Parser for ini files.
*/
/*--------------------------------------------------------------------------*/
#ifndef _INIPARSER_H_
#define _INIPARSER_H_
/*---------------------------------------------------------------------------
Includes
---------------------------------------------------------------------------*/
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
/*
* The following #include is necessary on many Unixes but not Linux.
* It is not needed for Windows platforms.
* Uncomment it if needed.
*/
/* #include <unistd.h> */
#include "dictionary.h"
/*-------------------------------------------------------------------------*/
/**
@brief Get number of sections in a dictionary
@param d Dictionary to examine
@return int Number of sections found in dictionary
This function returns the number of sections found in a dictionary.
The test to recognize sections is done on the string stored in the
dictionary: a section name is given as "section" whereas a key is
stored as "section:key", thus the test looks for entries that do not
contain a colon.
This clearly fails in the case a section name contains a colon, but
this should simply be avoided.
This function returns -1 in case of error.
*/
/*--------------------------------------------------------------------------*/
int iniparser_getnsec(dictionary * d);
/*-------------------------------------------------------------------------*/
/**
@brief Get name for section n in a dictionary.
@param d Dictionary to examine
@param n Section number (from 0 to nsec-1).
@return Pointer to char string
This function locates the n-th section in a dictionary and returns
its name as a pointer to a string statically allocated inside the
dictionary. Do not free or modify the returned string!
This function returns NULL in case of error.
*/
/*--------------------------------------------------------------------------*/
char * iniparser_getsecname(dictionary * d, int n);
/*-------------------------------------------------------------------------*/
/**
@brief Save a dictionary to a loadable ini file
@param d Dictionary to dump
@param f Opened file pointer to dump to
@return void
This function dumps a given dictionary into a loadable ini file.
It is Ok to specify @c stderr or @c stdout as output files.
*/
/*--------------------------------------------------------------------------*/
void iniparser_dump_ini(dictionary * d, FILE * f);
/*-------------------------------------------------------------------------*/
/**
@brief Save a dictionary section to a loadable ini file
@param d Dictionary to dump
@param s Section name of dictionary to dump
@param f Opened file pointer to dump to
@return void
This function dumps a given section of a given dictionary into a loadable ini
file. It is Ok to specify @c stderr or @c stdout as output files.
*/
/*--------------------------------------------------------------------------*/
void iniparser_dumpsection_ini(dictionary * d, char * s, FILE * f);
/*-------------------------------------------------------------------------*/
/**
@brief Dump a dictionary to an opened file pointer.
@param d Dictionary to dump.
@param f Opened file pointer to dump to.
@return void
This function prints out the contents of a dictionary, one element by
line, onto the provided file pointer. It is OK to specify @c stderr
or @c stdout as output files. This function is meant for debugging
purposes mostly.
*/
/*--------------------------------------------------------------------------*/
void iniparser_dump(dictionary * d, FILE * f);
/*-------------------------------------------------------------------------*/
/**
@brief Get the number of keys in a section of a dictionary.
@param d Dictionary to examine
@param s Section name of dictionary to examine
@return Number of keys in section
*/
/*--------------------------------------------------------------------------*/
int iniparser_getsecnkeys(dictionary * d, char * s);
/*-------------------------------------------------------------------------*/
/**
@brief Get the number of keys in a section of a dictionary.
@param d Dictionary to examine
@param s Section name of dictionary to examine
@return pointer to statically allocated character strings
This function queries a dictionary and finds all keys in a given section.
Each pointer in the returned char pointer-to-pointer is pointing to
a string allocated in the dictionary; do not free or modify them.
This function returns NULL in case of error.
*/
/*--------------------------------------------------------------------------*/
char ** iniparser_getseckeys(dictionary * d, char * s);
/*-------------------------------------------------------------------------*/
/**
@brief Get the string associated to a key
@param d Dictionary to search
@param key Key string to look for
@param def Default value to return if key not found.
@return pointer to statically allocated character string
This function queries a dictionary for a key. A key as read from an
ini file is given as "section:key". If the key cannot be found,
the pointer passed as 'def' is returned.
The returned char pointer is pointing to a string allocated in
the dictionary, do not free or modify it.
*/
/*--------------------------------------------------------------------------*/
char * iniparser_getstring(dictionary * d, const char * key, char * def);
/*-------------------------------------------------------------------------*/
/**
@brief Get the string associated to a key, convert to an int
@param d Dictionary to search
@param key Key string to look for
@param notfound Value to return in case of error
@return integer
This function queries a dictionary for a key. A key as read from an
ini file is given as "section:key". If the key cannot be found,
the notfound value is returned.
Supported values for integers include the usual C notation
so decimal, octal (starting with 0) and hexadecimal (starting with 0x)
are supported. Examples:
- "42" -> 42
- "042" -> 34 (octal -> decimal)
- "0x42" -> 66 (hexa -> decimal)
Warning: the conversion may overflow in various ways. Conversion is
totally outsourced to strtol(), see the associated man page for overflow
handling.
Credits: Thanks to A. Becker for suggesting strtol()
*/
/*--------------------------------------------------------------------------*/
int iniparser_getint(dictionary * d, const char * key, int notfound);
/*-------------------------------------------------------------------------*/
/**
@brief Get the string associated to a key, convert to a long
@param d Dictionary to search
@param key Key string to look for
@param notfound Value to return in case of error
@return long
Credits: This function bases completely on int iniparser_getint and was
slightly modified to return long instead of int.
*/
/*--------------------------------------------------------------------------*/
long iniparser_getlint(dictionary * d, const char * key, int notfound);
/*-------------------------------------------------------------------------*/
/**
@brief Get the string associated to a key, convert to a double
@param d Dictionary to search
@param key Key string to look for
@param notfound Value to return in case of error
@return double
This function queries a dictionary for a key. A key as read from an
ini file is given as "section:key". If the key cannot be found,
the notfound value is returned.
*/
/*--------------------------------------------------------------------------*/
double iniparser_getdouble(dictionary * d, const char * key, double notfound);
/*-------------------------------------------------------------------------*/
/**
@brief Get the string associated to a key, convert to a boolean
@param d Dictionary to search
@param key Key string to look for
@param notfound Value to return in case of error
@return integer
This function queries a dictionary for a key. A key as read from an
ini file is given as "section:key". If the key cannot be found,
the notfound value is returned.
A true boolean is found if one of the following is matched:
- A string starting with 'y'
- A string starting with 'Y'
- A string starting with 't'
- A string starting with 'T'
- A string starting with '1'
A false boolean is found if one of the following is matched:
- A string starting with 'n'
- A string starting with 'N'
- A string starting with 'f'
- A string starting with 'F'
- A string starting with '0'
The notfound value returned if no boolean is identified, does not
necessarily have to be 0 or 1.
*/
/*--------------------------------------------------------------------------*/
int iniparser_getboolean(dictionary * d, const char * key, int notfound);
/*-------------------------------------------------------------------------*/
/**
@brief Set an entry in a dictionary.
@param ini Dictionary to modify.
@param entry Entry to modify (entry name)
@param val New value to associate to the entry.
@return int 0 if Ok, -1 otherwise.
If the given entry can be found in the dictionary, it is modified to
contain the provided value. If it cannot be found, -1 is returned.
It is Ok to set val to NULL.
*/
/*--------------------------------------------------------------------------*/
int iniparser_set(dictionary * ini, const char * entry, const char * val);
/*-------------------------------------------------------------------------*/
/**
@brief Delete an entry in a dictionary
@param ini Dictionary to modify
@param entry Entry to delete (entry name)
@return void
If the given entry can be found, it is deleted from the dictionary.
*/
/*--------------------------------------------------------------------------*/
void iniparser_unset(dictionary * ini, const char * entry);
/*-------------------------------------------------------------------------*/
/**
@brief Finds out if a given entry exists in a dictionary
@param ini Dictionary to search
@param entry Name of the entry to look for
@return integer 1 if entry exists, 0 otherwise
Finds out if a given entry exists in the dictionary. Since sections
are stored as keys with NULL associated values, this is the only way
of querying for the presence of sections in a dictionary.
*/
/*--------------------------------------------------------------------------*/
int iniparser_find_entry(dictionary * ini, const char * entry) ;
/*-------------------------------------------------------------------------*/
/**
@brief Parse an ini file and return an allocated dictionary object
@param ininame Name of the ini file to read.
@return Pointer to newly allocated dictionary
This is the parser for ini files. This function is called, providing
the name of the file to be read. It returns a dictionary object that
should not be accessed directly, but through accessor functions
instead.
The returned dictionary must be freed using iniparser_freedict().
*/
/*--------------------------------------------------------------------------*/
dictionary * iniparser_load(const char * ininame);
/*-------------------------------------------------------------------------*/
/**
@brief Free all memory associated to an ini dictionary
@param d Dictionary to free
@return void
Free all memory associated to an ini dictionary.
It is mandatory to call this function before the dictionary object
gets out of the current context.
*/
/*--------------------------------------------------------------------------*/
void iniparser_freedict(dictionary * d);
#endif
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//CHECK:
//What happens when ECQBits==1, or ECQBits==0 or ECQBits<0?
//Rounding? Scale originalEb by 0.99?
//Possible improvement: Change GAMESS format: {i i i i d} -> {i}{i}{i}{i}{d}
//Possible improvement: Optimize bookkeeping bits
//Possible improvement: Guess the type (C/UC, Sparse/Not)
//Possible improvement: Get rid of writing/reading some of the indexes to in/out buffers
//Possible improvement: Get rid of all debug stuff, including Makefile debug flags
//Possible improvement: Get rid of "compressedBytes"
//Possible improvement: SparseCompressed, ECQBits=2: 1's and -1's can be represented by just 0 and 1, instead 10 and 11.
//Possible improvement: SparseCompressed, ECQBits>2: Again: 1: 10, -1:11, Others: 0XX...XX
//Possible improvement: WriteBitsFast: maybe remove some masks?
//Possible improvement: WriteBitsFast: Get rid of multiple calls!
//Possible improvement: UCSparse: Indexes use 64 bits. It can be lowered to _1DIdxBits
//Possible improvement: Parameters: Smaller data sizes may be possible!
#ifndef PASTRI_H
#define PASTRI_H
#include <stdio.h>
#include <stdlib.h>
#include <stdint.h>
#include <string.h>
#include <math.h>
#include <assert.h> //Just for debugging purposes!
//#define DATASIZE 8 //Bytes per input data point.
//We have only 1 double per data point, so it is 8 bytes.
#define MAX_PS_SIZE 100
#define MAX_BLOCK_SIZE 10000
#define MAX_BUFSIZE 160000 //Should be a multiple of 8
#define D_W 0 //Debug switch: Write (input block)
#define D_R 0 //Debug switch: Read (compressed block)
#define D_G 0 //Debug switch: General
#define D_G2 0 //Debug switch: General 2 (a little more detail)
#define D_C 0 //Debug switch: C
//#define DEBUG 1 //Debug switch
//#define BOOKKEEPINGBITS 0 //Currently unused
//#define BOOKKEEPINGBITS 120 //Includes: mode, indexOffsets, compressedBytes, Pb_, ECQBits_ (8+64+32+8+8)
//BOOKKEEPINGBITS is defined here, because if P & S is going to be used, they appear just after the bookkeeping part.
//This allows us to write P and S directly onto using outBuf.
// IMPORTANT NOTE:
//Read/Write up to 56 bits.
//More than that is not supported!
/********************************************************************/
//Datatype Declarations:
/********************************************************************/
typedef struct pastri_params{
double originalEb; //Error Bound entered by the user
double usedEb; //Error Bound used during compression/deceompression
int numBlocks; //Number of blocks to be compressed
int dataSize; //8(=Double) or 4(=Float)
int bf[4]; //Orbital types (basis function types). Typically in range [0,3]
int idxRange[4]; //Ranges of indexes. idxRange[i]=(bf[i]+1)*(bf[i]+2)/2;
int sbSize; //=idxRange[2]*idxRange[3];
int sbNum; //=idxRange[0]*idxRange[1];
int bSize; //=sbSize*sbNum;
//uint16_t idxOffset[4]; //Index offset values. No longer used.
}pastri_params;
//Block-specific stuff:
typedef struct pastri_blockParams{
uint16_t nonZeros;
//int ECQ0s; //= p->bSize - numOutliers //OR: p->bSize=ECQ0s+ECQ1s+ECQOthers
int ECQ1s;
int ECQOthers;
int numOutliers; //=ECQ1s+ECQOthers
int patternBits;
int scaleBits;
double binSize;
double scalesBinSize;
uint64_t ECQExt;
int ECQBits;
int _1DIdxBits;
}pastri_blockParams;
typedef union u_UI64I64D{
uint64_t ui64;
int64_t i64;
double d;
} u_UI64I64D;
/********************************************************************/
//Function Prototypes:
/********************************************************************/
void SZ_pastriReadParameters(char paramsFilename[512],pastri_params *paramsPtr);
//Read the basic PaSTRI parameters from a file, speficied by paramsFilename.
void SZ_pastriPreprocessParameters(pastri_params *p);
//Using basic PaSTRI parameters, generate the others.
//For example, block and sub-block sizes are generated by using basis function types.
void SZ_pastriCompressBatch(pastri_params *p,unsigned char *originalBuf, unsigned char** compressedBufP,size_t *compressedBytes);
//INPUTS: p, originalBuf
//OUTPUTS: compressedBufP, compressedBytes
//Using the inputs, compressedBufP is allocated and populated by the compressed data. Compressed size is written into compressedBytes.
//Parameters are also stored at the beginning part of the compressedBuf
void SZ_pastriDecompressBatch(unsigned char*compressedBuf, pastri_params *p, unsigned char** decompressedBufP ,size_t *decompressedBytes);
//INPUTS: compressedBuf
//OUTPUTS: p, decompressedBufP, decompressedBytes
//First, parameters are read from compressedBuf and written into p.
//Then, decompressedBufP is allocated and populated by the decompressed data. Decompressed size is written into decompressedBytes.
void SZ_pastriCheckBatch(pastri_params *p,unsigned char*originalBuf,unsigned char*decompressedBuf);
//INPUTS: p, originalBuf, decompressedBuf
//OUTPUTS: None (Just some on-screen messages)
//Compares originalBuf with decompressedBuf. Checks whether the absolute error condition is satisfied or not.
/********************************************************************/
//Other Includes:
/********************************************************************/
#include "pastriGeneral.h" //General tools
#include "pastriD.h" //Compression/Decompression for Double data
#include "pastriF.h" //Compression/Decompression for Float data
#endif
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/**
* @file sz_double.h
* @author Sheng Di
* @date July, 2017
* @brief Header file for the sz_double.c.
* (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory.
* See COPYRIGHT in top-level directory.
*/
#ifndef _SZ_Double_PWR_H
#define _SZ_Double_PWR_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
#include <stdbool.h>
void compute_segment_precisions_double_1D(double *oriData, size_t dataLength, double* pwrErrBound, unsigned char* pwrErrBoundBytes, double globalPrecision);
unsigned int optimize_intervals_double_1D_pwr(double *oriData, size_t dataLength, double* pwrErrBound);
void compute_segment_precisions_double_2D(double *oriData, double* pwrErrBound,
size_t r1, size_t r2, size_t R2, size_t edgeSize, unsigned char* pwrErrBoundBytes, double Min, double Max, double globalPrecision);
unsigned int optimize_intervals_double_2D_pwr(double *oriData, size_t r1, size_t r2, size_t R2, size_t edgeSize, double* pwrErrBound);
void compute_segment_precisions_double_3D(double *oriData, double* pwrErrBound,
size_t r1, size_t r2, size_t r3, size_t R2, size_t R3, size_t edgeSize, unsigned char* pwrErrBoundBytes, double Min, double Max, double globalPrecision);
unsigned int optimize_intervals_double_3D_pwr(double *oriData, size_t r1, size_t r2, size_t r3, size_t R2, size_t R3, size_t edgeSize, double* pwrErrBound);
void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision, size_t dataLength, size_t *outSize, double min, double max);
void SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision, size_t r1, size_t r2,
size_t *outSize, double min, double max);
void SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision,
size_t r1, size_t r2, size_t r3, size_t *outSize, double min, double max);
void createRangeGroups_double(double** posGroups, double** negGroups, int** posFlags, int** negFlags);
void compressGroupIDArray_double(char* groupID, TightDataPointStorageD* tdps);
TightDataPointStorageD* SZ_compress_double_1D_MDQ_pwrGroup(double* oriData, size_t dataLength, int errBoundMode,
double absErrBound, double relBoundRatio, double pwrErrRatio, double valueRangeSize, double medianValue_f);
void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwrgroup(unsigned char** newByteData, double *oriData,
size_t dataLength, double absErrBound, double relBoundRatio, double pwrErrRatio, double valueRangeSize, double medianValue_f, size_t *outSize);
void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr_pre_log(unsigned char** newByteData, double *oriData, double globalPrecision, size_t dataLength, size_t *outSize, double min, double max);
void SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr_pre_log(unsigned char** newByteData, double *oriData, double globalPrecision, size_t r1, size_t r2, size_t *outSize, double min, double max);
void SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr_pre_log(unsigned char** newByteData, double *oriData, double globalPrecision, size_t r1, size_t r2, size_t r3, size_t *outSize, double min, double max);
void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr_pre_log_MSST19(unsigned char** newByteData, double *oriData, double pwrErrRatio, size_t dataLength, size_t *outSize, double valueRangeSize, double medianValue_f,
unsigned char* signs, bool* positive, double min, double max, double nearZero);
void SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr_pre_log_MSST19(unsigned char** newByteData, double *oriData, double pwrErrRatio, size_t r1, size_t r2, size_t *outSize, double valueRangeSize,
unsigned char* signs, bool* positive, double min, double max, double nearZero);
void SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr_pre_log_MSST19(unsigned char** newByteData, double *oriData, double pwrErrRatio, size_t r1, size_t r2, size_t r3, size_t *outSize, double valueRangeSize,
unsigned char* signs, bool* positive, double min, double max, double nearZero);
#ifdef __cplusplus
}
#endif
#endif /* ----- #ifndef _SZ_Double_PWR_H ----- */
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