Summary:
This patch remove the unnecessary Compaction::ReleaseInputs().

Compaction::ReleaseInputs() tries to unref its input_version
and column_family.  However, such unref is always done in
~Compaction(), and all current ReleaseInputs() calls are
right before the destructor.

Test Plan: ./db_test

Reviewers: igor

Reviewed By: igor

Subscribers: igor, rven, dhruba, sdong

Differential Revision: https://reviews.facebook.net/D31605

Summary:
While running cross-functional tests for weak iterators, I
encountered a bug in GeoDB. GeoDB reads a key from the database and
tries to use it after doing a Seek. Fixing it by storing the key locally
so that it is still visible after the Seek.

Test Plan: Run geodb_test

Reviewers: sdong, igor

Reviewed By: igor

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31599

Summary:
This is a port of [[ https://github.com/google/leveldb/blob/master/db/fault_injection_test.cc | LevelDB's fault_injection_test ]] to RocksDB. Unfortunately it fails with:

```
==== Test FaultInjectionTest.FaultTest
db/fault_injection_test.cc:491: Corruption: no meta-nextfile entry in descriptor
#0   ./fault_injection_test() [0x41477a] rocksdb::FaultInjectionTest::PartialCompactTestReopenWithFault(rocksdb::FaultInjectionTest::ResetMethod, int, int) /data/users/tomdzk/rocksdb/db/fault_injection_test.cc:491
#1   ./fault_injection_test() [0x40a38a] rocksdb::_Test_FaultTest::_Run() /data/users/tomdzk/rocksdb/db/fault_injection_test.cc:517
#2   ./fault_injection_test() [0x415bea] rocksdb::_Test_FaultTest::_RunIt() /data/users/tomdzk/rocksdb/db/fault_injection_test.cc:507
#3   ./fault_injection_test() [0x584367] rocksdb::test::RunAllTests() /data/users/tomdzk/rocksdb/util/testharness.cc:70
#4   /usr/local/fbcode/gcc-4.8.1-glibc-2.17/lib/libc.so.6(__libc_start_main+0x10e) [0x7f7a40857efe] ??  ??:0
#5   ./fault_injection_test() [0x408bb8] _start ??:0
```

so I commented out the test invocation in the source code for now (lines 514-520) so it can be merged.

Test Plan: This is a new test.

Reviewers: igor

Reviewed By: igor

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31587

Summary:
This diff adds BlockBasedTable format_version = 2. New format version brings better compressed block format for these compressions:
1) Zlib -- encode decompressed size in compressed block header
2) BZip2 -- encode decompressed size in compressed block header
3) LZ4 and LZ4HC -- instead of doing memcpy of size_t encode size as varint32. memcpy is very bad because the DB is not portable accross big/little endian machines or even platforms where size_t might be 8 or 4 bytes.

It does not affect format for snappy.

If you write a new database with format_version = 2, it will not be readable by RocksDB versions before 3.10. DB::Open() will return corruption in that case.

Test Plan:
Added a new test in db_test.
I will also run db_bench and verify VSIZE when block_cache == 1GB

Reviewers: yhchiang, rven, MarkCallaghan, dhruba, sdong

Reviewed By: sdong

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31461

Add WriteBatchWithIndex to the Java API

Summary: This will be used to test format changes in https://reviews.facebook.net/D31461

Test Plan: run it

Reviewers: MarkCallaghan, sdong

Reviewed By: sdong

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31515

Remove duplicated method declarations in C header.

Test Plan: Compile. Run it.

Reviewers: yhchiang, dhruba, igor

Reviewed By: igor

Subscribers: leveldb, dhruba

Differential Revision: https://reviews.facebook.net/D31479

Summary:
In this diff I add another parameter to BlockBasedTableOptions that will let users specify block based table's format. This will greatly simplify block based table's format changes in the future.

First format change that this will support is encoding decompressed size in Zlib and BZip2 blocks. This diff is blocking https://reviews.facebook.net/D31311.

Test Plan: Added a unit tests. More tests to come as part of https://reviews.facebook.net/D31311.

Reviewers: dhruba, MarkCallaghan, yhchiang, rven, sdong

Reviewed By: sdong

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31383

Build with clang 3.5 on Linux.

[RocksJava] ColumnFamilyDescriptor alignment with listColumnFamilies

Summary: Allow GetThreadList() to indicate a thread is doing Compaction.

Test Plan:
export ROCKSDB_TESTS=ThreadStatus
./db_test

Reviewers: ljin, igor, sdong

Reviewed By: sdong

Subscribers: leveldb, dhruba, jonahcohen, rven

Differential Revision: https://reviews.facebook.net/D30105

Summary:
Previous to this commit ColumnFamilyDescriptor took a String as name for the ColumnFamily name. String is however encoding dependent which is bad because listColumnFamilies returns byte arrays without any encoding information.

All public API call were deprecated and flagged to be removed in 3.10.0

Test Plan:
make rocksdbjava
make test
mvn -f rocksjni.pom package

Reviewers: yhchiang, adamretter, ankgup87

Subscribers: dhruba

Differential Revision: https://reviews.facebook.net/D30525

Summary: We keep checksum functions in util/, there is no reason for compression to be in port/

Test Plan: compiles

Reviewers: sdong

Reviewed By: sdong

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D31281

Summary:
Add printing of stall time in DB Stats:

Sample outputs:

** DB Stats **
Uptime(secs): 53.2 total, 1.7 interval
Cumulative writes: 625940 writes, 625939 keys, 625940 batches, 1.0 writes per batch, 0.49 GB user ingest, stall micros: 50691070
Cumulative WAL: 625940 writes, 625939 syncs, 1.00 writes per sync, 0.49 GB written
Interval writes: 10859 writes, 10859 keys, 10859 batches, 1.0 writes per batch, 8.7 MB user ingest, stall micros: 1692319
Interval WAL: 10859 writes, 10859 syncs, 1.00 writes per sync, 0.01 MB written

Test Plan:
make all check
verify printing using db_bench

Reviewers: igor, yhchiang, rven, MarkCallaghan

Reviewed By: MarkCallaghan

Subscribers: leveldb, dhruba

Differential Revision: https://reviews.facebook.net/D31239

Memory issue fix in c_simple_example

Valgrind report prior to this fix:
==20829== Memcheck, a memory error detector
==20829== Copyright (C) 2002-2013, and GNU GPL'd, by Julian Seward et al.
==20829== Using Valgrind-3.10.0.SVN and LibVEX; rerun with -h for copyright info
==20829== Command: ./c_simple_example
==20829==
==20829== Invalid read of size 1
==20829==    at 0x4C2F1C8: strcmp (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
==20829==    by 0x422522: main (in /home/user/rocksgit/transfer/rocksdb-git/examples/c_simple_example)
==20829==  Address 0x5f60df5 is 0 bytes after a block of size 5 alloc'd
==20829==    at 0x4C2AB80: malloc (in /usr/lib/valgrind/vgpreload_memcheck-amd64-linux.so)
==20829==    by 0x4226D5: CopyString (c.cc:498)
==20829==    by 0x423032: rocksdb_get (c.cc:730)
==20829==    by 0x4224EB: main (in /home/user/rocksgit/transfer/rocksdb-git/examples/c_simple_example)
==20829==
==20829==
==20829== HEAP SUMMARY:
==20829==     in use at exit: 77 bytes in 5 blocks
==20829==   total heap usage: 4,491 allocs, 4,486 frees, 839,216 bytes allocated
==20829==
==20829== LEAK SUMMARY:
==20829==    definitely lost: 5 bytes in 1 blocks
==20829==    indirectly lost: 0 bytes in 0 blocks
==20829==      possibly lost: 0 bytes in 0 blocks
==20829==    still reachable: 72 bytes in 4 blocks
==20829==         suppressed: 0 bytes in 0 blocks
==20829== Rerun with --leak-check=full to see details of leaked memory
==20829==
==20829== For counts of detected and suppressed errors, rerun with: -v
==20829== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 0 from 0)

Summary: I'm tired of double-tab when opening build_tools/<something>. This change will make bu<tab> fully complete my path :)

Test Plan: `vi bu<tab>` gives me `vi build_tools/` yay!

Reviewers: yhchiang, rven, sdong

Reviewed By: sdong

Subscribers: dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D30639