Merge branch 'develop' of https://github.com/PaddlePaddle/Paddle into develop

yes

doc/fluid/build_and_install/paddleci.png

+../../v2/build_and_install/paddleci.png
\ No newline at end of file

doc/fluid/design/motivation/refactorization.md

@@ -125,12 +125,12 @@ Compile Time -> IR -> Runtime
 
 ## Operator/OpWithKernel/OpKernel
 
-![class_diagram](http://api.paddlepaddle.org/graphviz?dot=https://gist.githubusercontent.com/reyoung/53df507f6749762675dff3e7ce53372f/raw/49caf1fb70820fb4a6c217634317c9306f361f36/op_op_with_kern_class_diagram.dot)
+![class_diagram](https://raw.githubusercontent.com/PaddlePaddle/Paddle/develop/doc/fluid/images/op_op_with_kern_class_diagram.dot)
 
 ---
 
 ## Operator
-![class_diagram](http://api.paddlepaddle.org/graphviz?dot=https://gist.githubusercontent.com/reyoung/53df507f6749762675dff3e7ce53372f/raw/dd598e8f1976f5759f58af5e5ef94738a6b2e661/op.dot)
+![class_diagram](https://raw.githubusercontent.com/PaddlePaddle/Paddle/develop/doc/fluid/images/op.dot)
 
 * `Operator` is the fundamental building block of the user interface.
     * Operator stores input/output variable names and attributes.
@@ -141,7 +141,7 @@ Compile Time -> IR -> Runtime
 
 ## OpWithKernel/Kernel
 
-![class_diagram](http://api.paddlepaddle.org/graphviz?dot=https://gist.githubusercontent.com/reyoung/53df507f6749762675dff3e7ce53372f/raw/9d7f4eba185cf41c8e2fbfb40ae21890dbddcd39/op_with_kernel.dot)
+![class_diagram](https://raw.githubusercontent.com/PaddlePaddle/Paddle/develop/doc/fluid/images/op_with_kernel.dot)
 
 * `OpWithKernel` inherits `Operator`.
 * `OpWithKernel` contains a Kernel map.

doc/fluid/images/op.dot

+digraph sample { 
+  graph [rankdir=TD]; node [shape=record];
+  op [label="{Operator| InferShape()=0\lRun()=0\l | map<string, string[]> inputs_\lmap<string, string[]> outputs_ \l AttributeMap attrs_\l}"]; 
+}
\ No newline at end of file

doc/fluid/images/op_op_with_kern_class_diagram.dot

+digraph sample { 
+  graph [rankdir=TD]; node [shape=record];
+  op [label="{Operator| InferShape()=0\lRun()=0\l | map<string, string[]> inputs_\lmap<string, string[]> outputs_ \l AttributeMap attrs_\l}"]; 
+  op_with_kern [label="{OpWithKernel | InferShape()=0\lRun()\l | map<OpKernelKey,OpKernel>kernels_ }"]
+  op_kernel [label="{OpKernel | Compute()=0}"]
+  op_kernel_key [label="{OpKernelKey| Place place\n...}"]
+
+  op -> op_with_kern [dir=back, arrowtail=onormal]
+  op_with_kern -> op_kernel [arrowhead=vee, label="contains many"]
+
+  {
+    rank=same;
+    op_with_kern
+    op_kernel
+  }
+
+  op_kernel -> op_kernel_key [style=invis]
+
+  {
+    rank=same;
+    op_kernel
+    op_kernel_key
+  }
+
+  op_with_kern -> op_kernel_key [arrowhead=vee, label ="\nas map key"]
+
+  mul_op [label="MulOp"]
+  op_with_kern -> mul_op [dir=back, arrowtail=onormal]
+  mul_kernel [label="template <typename Place>\lclass MulOpKernel\l"]
+  op_kernel -> mul_kernel [dir=back, arrowtail=onormal]
+  mul_op -> mul_kernel [arrowhead=vee, label="register many"]
+  
+  {
+    rank=same;
+    mul_op;
+    mul_kernel;
+  }
+}
\ No newline at end of file

doc/fluid/images/op_with_kernel.dot

+digraph sample { 
+  graph [rankdir=TD]; node [shape=record];
+  op [label="{Operator}"]; 
+  op_with_kern [label="{OpWithKernel | InferShape()=0\lRun()\l | map<OpKernelKey,OpKernel>kernels_ }"]
+  op_kernel [label="{OpKernel | Compute()=0}"]
+  op_kernel_key [label="{OpKernelKey| Place place\n...}"]
+
+  op -> op_with_kern [dir=back, arrowtail=onormal]
+  op_with_kern -> op_kernel [arrowhead=vee, label="contains many"]
+
+  {
+    rank=same;
+    op_with_kern
+    op_kernel
+  }
+
+  op_kernel -> op_kernel_key [style=invis]
+
+  {
+    rank=same;
+    op_kernel
+    op_kernel_key
+  }
+
+  op_with_kern -> op_kernel_key [arrowhead=vee, label ="\nas map key"]
+}
\ No newline at end of file

doc/v2/api/config/layer.rst

@@ -142,7 +142,7 @@ gated_unit
 -----------
 ..  autoclass:: paddle.v2.layer.gated_unit
     :noindex:
-    
+
 Recurrent Layer Group
 =====================
 
@@ -354,7 +354,7 @@ dropout
 --------
 ..  autoclass:: paddle.v2.layer.dropout
     :noindex:
-    
+
 dot_prod
 ---------
 .. autoclass:: paddle.v2.layer.dot_prod
@@ -460,6 +460,11 @@ multi_binary_label_cross_entropy_cost
 ..  autoclass:: paddle.v2.layer.multi_binary_label_cross_entropy_cost
     :noindex:
 
+classification_cost
+-------------------
+.. autoclass:: paddle.v2.layer.classification_cost
+   :noindex:
+
 huber_regression_cost
 -------------------------
 ..  autoclass:: paddle.v2.layer.huber_regression_cost
@@ -534,7 +539,7 @@ detection_output
 ----------------
 ..  autoclass:: paddle.v2.layer.detection_output
     :noindex:
-    
+
 Check Layer
 ============
 

paddle/fluid/framework/details/fetch_op_handle.cc

@@ -49,7 +49,9 @@ void FetchOpHandle::RunImpl() {
       platform::DeviceContextPool::Instance().Get(platform::CPUPlace());
   for (auto *input : inputs_) {
     auto *var = static_cast<VarHandle *>(input);
-    var->generated_op_->Wait(cpu_ctx);
+    if (var->generated_op_) {
+      var->generated_op_->Wait(cpu_ctx);
+    }
   }
   tensors_.resize(inputs_.size());
   auto *var_handle = static_cast<VarHandle *>(inputs_[0]);

paddle/fluid/framework/details/nccl_all_reduce_op_handle.cc

@@ -36,7 +36,9 @@ void NCCLAllReduceOpHandle::RunImpl() {
     // Wait input done
     for (auto *in : inputs_) {
       auto &p = static_cast<VarHandle *>(in)->place_;
-      in->generated_op_->Wait(dev_ctxes_[p]);
+      if (in->generated_op_) {
+        in->generated_op_->Wait(dev_ctxes_[p]);
+      }
     }
 
     auto &var_name = static_cast<VarHandle *>(this->inputs_[0])->name_;

paddle/fluid/framework/details/send_op_handle.cc

@@ -32,7 +32,9 @@ void SendOpHandle::RunImpl() {
     if (in->DebugString() == "dummy") {  // HACK
       continue;
     }
-    in->generated_op_->Wait(dev_ctxes_[p]);
+    if (in->generated_op_) {
+      in->generated_op_->Wait(dev_ctxes_[p]);
+    }
   }
   auto &tmp_scope = local_scope_->FindVar(kLocalExecScopeName)->Get<Scope *>();
   // FIXME(wuyi): can not use RunAndRecordEvent here, for it will cause dead

paddle/fluid/inference/tests/book/CMakeLists.txt

@@ -36,5 +36,5 @@ inference_test(label_semantic_roles)
 inference_test(recognize_digits ARGS mlp conv)
 inference_test(recommender_system)
 #inference_test(rnn_encoder_decoder)
-inference_test(understand_sentiment ARGS conv)
+#inference_test(understand_sentiment ARGS conv)
 inference_test(word2vec)

paddle/fluid/operators/conv_op.h

@@ -187,7 +187,8 @@ class GemmConvKernel : public framework::OpKernel<T> {
         // gemm
         Tensor out_slice = out_batch.Slice(g * out_step, (g + 1) * out_step);
         Tensor filter_slice = filter.Slice(g * out_step, (g + 1) * out_step);
-        blas.MatMul(filter_slice, col_matrix, &out_slice);
+        blas.MatMul(filter_slice, false, col_matrix, false, T(1.0), &out_slice,
+                    T(0.0));
       }
     }
   }
@@ -304,7 +305,8 @@ class GemmConvGradKernel : public framework::OpKernel<T> {
             col_matrix.ShareDataWith(in_grad_slice);
             col_matrix.Resize(col_matrix_shape);
           }
-          blas.MatMul(filter_slice, true, out_grad_slice, false, &col_matrix);
+          blas.MatMul(filter_slice, true, out_grad_slice, false, T(1.0),
+                      &col_matrix, T(0.0));
 
           if (is_expand && data_dim == 2U) {
             col2im(dev_ctx, col, dilations, strides,
@@ -351,8 +353,8 @@ class GemmConvGradKernel : public framework::OpKernel<T> {
           // gemm
           Tensor filter_grad_slice =
               filter_grad_.Slice(g * out_step, (g + 1) * out_step);
-          blas.MatMul(out_grad_slice, false, col_matrix, true,
-                      &filter_grad_slice);
+          blas.MatMul(out_grad_slice, false, col_matrix, true, T(1.0),
+                      &filter_grad_slice, T(1.0));
         }
       }
     }

paddle/fluid/operators/conv_transpose_op.h

@@ -135,7 +135,8 @@ class GemmConvTransposeKernel : public framework::OpKernel<T> {
 
       // col_matrix = filter * input_batch
       // of shape (c * k_h * k_w, h * w) or (c * k_d * k_h * k_w, d * h * w)
-      blas.MatMul(filter, true, input_batch, false, &col_matrix);
+      blas.MatMul(filter, true, input_batch, false, static_cast<T>(1.0),
+                  &col_matrix, static_cast<T>(0.0));
 
       if (data_dim == 2U) {
         // col2im: col_matrix -> dy
@@ -267,7 +268,8 @@ class GemmConvTransposeGradKernel : public framework::OpKernel<T> {
           // or
           // (m, c * k_d * k_h * k_w) * (c * k_d * k_h * k_w, d * h * w) -> (m,
           // d, h, w)
-          blas.MatMul(filter, false, col_matrix, false, &input_grad_batch);
+          blas.MatMul(filter, false, col_matrix, false, static_cast<T>(1.0),
+                      &input_grad_batch, static_cast<T>(0.0));
         }
         if (filter_grad) {
           // input batch
@@ -277,7 +279,8 @@ class GemmConvTransposeGradKernel : public framework::OpKernel<T> {
           // or
           // (m, d * h * w) * (d * h * w, c * k_d * k_h * k_w) -> (m, c * k_d *
           // k_h * k_w)
-          blas.MatMul(in_batch, false, col_matrix, true, &filter_grad_);
+          blas.MatMul(in_batch, false, col_matrix, true, static_cast<T>(1.0),
+                      &filter_grad_, static_cast<T>(1.0));
         }
       }
     }

paddle/fluid/platform/cuda_device_function.h

@@ -63,6 +63,7 @@ __device__ T reduceSum(T val, int tid, int len) {
     val += platform::CudaShuffleDownSync(mask, val, offset);
 
   if (tid < warpSize) shm[tid] = 0;
+  __syncthreads();
 
   if (tid % warpSize == 0) {
     shm[tid / warpSize] = val;

paddle/fluid/platform/profiler.cc

@@ -463,7 +463,7 @@ void SetProfileListener() {
   std::mt19937 rng;
   rng.seed(std::random_device()());
   std::uniform_int_distribution<std::mt19937::result_type> dist6(
-      1, std::numeric_limits<int64_t>::max());
+      1, std::numeric_limits<std::mt19937::result_type>::max());
   profiler_lister_id = dist6(rng);
 }
 int64_t ListenerId() { return profiler_lister_id; }

python/paddle/fluid/tests/unittests/test_memory_optimization_transpiler.py

@@ -18,7 +18,7 @@ import unittest
 import paddle.fluid.layers as layers
 import paddle.fluid.optimizer as optimizer
 from paddle.fluid.framework import Program, program_guard
-from paddle.fluid.memory_optimization_transpiler import memory_optimize
+from paddle.fluid.transpiler import memory_optimize
 
 
 class TestControlFlowGraph(unittest.TestCase):

python/paddle/fluid/tests/unittests/test_parallel_executor.py

@@ -12,7 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-import numpy
+import numpy as np
 import unittest
 
 import paddle.fluid as fluid
@@ -243,7 +243,7 @@ class TestParallelExecutorBase(unittest.TestCase):
             begin = time.time()
             first_loss, = run_executor(
                 exe=exe, feed=feed_dict, fetch_list=[loss.name])
-            first_loss = numpy.array(first_loss)
+            first_loss = np.array(first_loss)
 
             for i in xrange(iter):
                 run_executor(exe=exe, feed=feed_dict, fetch_list=[])
@@ -256,7 +256,7 @@ class TestParallelExecutorBase(unittest.TestCase):
                 print "%.4f Instance per second" % (
                     (batch_size * iter + 2) / (end - begin))
 
-            last_loss = numpy.array(last_loss)
+            last_loss = np.array(last_loss)
 
             print first_loss, last_loss
             # self.assertGreater(first_loss[0], last_loss[0])
@@ -284,8 +284,8 @@ class TestMNIST(TestParallelExecutorBase):
         self.check_network_convergence(simple_fc_net)
         self.check_network_convergence(simple_fc_net, allow_op_delay=True)
 
-        img = numpy.zeros(shape=[32, 784], dtype='float32')
-        label = numpy.ones(shape=[32, 1], dtype='int64')
+        img = np.zeros(shape=[32, 784], dtype='float32')
+        label = np.ones(shape=[32, 1], dtype='int64')
         self.check_network_convergence(
             simple_fc_net, feed_dict={"image": img,
                                       "label": label})
@@ -294,8 +294,8 @@ class TestMNIST(TestParallelExecutorBase):
         self.check_simple_fc_convergence()
 
     def check_simple_fc_parallel_accuracy(self):
-        img = numpy.zeros(shape=[32, 784], dtype='float32')
-        label = numpy.ones(shape=[32, 1], dtype='int64')
+        img = np.zeros(shape=[32, 784], dtype='float32')
+        label = np.ones(shape=[32, 1], dtype='int64')
         single_first_loss, single_last_loss = self.check_network_convergence(
             method=simple_fc_net,
             seed=1000,
@@ -319,8 +319,8 @@ class TestMNIST(TestParallelExecutorBase):
 
     def check_batchnorm_fc_convergence(self):
         self.check_network_convergence(fc_with_batchnorm)
-        img = numpy.zeros(shape=[32, 784], dtype='float32')
-        label = numpy.ones(shape=[32, 1], dtype='int64')
+        img = np.zeros(shape=[32, 784], dtype='float32')
+        label = np.ones(shape=[32, 1], dtype='int64')
         self.check_network_convergence(
             fc_with_batchnorm, feed_dict={"image": img,
                                           "label": label})
@@ -404,9 +404,6 @@ class ModelHyperParams(object):
     dropout = 0.1
 
 
-import numpy as np
-
-
 def prepare_batch_input(insts, src_pad_idx, trg_pad_idx, n_head):
     """
     Pad the instances to the max sequence length in batch, and generate the
@@ -533,9 +530,8 @@ class ParallelExecutorTestingDuringTraining(unittest.TestCase):
             opt.minimize(loss)
 
             batch_size = 32
-            image = numpy.random.normal(size=(batch_size,
-                                              784)).astype('float32')
-            label = numpy.random.randint(0, 10, (batch_size, 1), dtype="int64")
+            image = np.random.normal(size=(batch_size, 784)).astype('float32')
+            label = np.random.randint(0, 10, (batch_size, 1), dtype="int64")
 
             place = fluid.CUDAPlace(0)
             exe = fluid.Executor(place)
@@ -552,12 +548,12 @@ class ParallelExecutorTestingDuringTraining(unittest.TestCase):
 
             for i in xrange(5):
                 test_loss, = test_exe.run([loss.name], feed=feed_dict)
-                test_loss = numpy.array(test_loss)
+                test_loss = np.array(test_loss)
 
                 train_loss, = train_exe.run([loss.name], feed=feed_dict)
-                train_loss = numpy.array(train_loss)
+                train_loss = np.array(train_loss)
                 self.assertTrue(
-                    numpy.allclose(
+                    np.allclose(
                         train_loss, test_loss, atol=1e-8),
                     "Train loss: " + str(train_loss) + "\n Test loss:" +
                     str(test_loss))
@@ -712,7 +708,7 @@ class TestCRFModel(unittest.TestCase):
             data = train_data()
             for i in xrange(10):
                 cur_batch = next(data)
-                print map(numpy.array,
+                print map(np.array,
                           pe.run(feed=feeder.feed(cur_batch),
                                  fetch_list=[avg_cost.name]))[0]
 
@@ -721,3 +717,84 @@ class TestCRFModel(unittest.TestCase):
 
     def test_update_dense_parameter(self):
         self.check_network_convergence(is_sparse=False)
+
+
+# test fetch all the variables of global_block
+
+import paddle.dataset.flowers as flowers
+import math
+
+
+def Lenet(data, class_dim):
+    conv1 = fluid.layers.conv2d(data, 32, 5, 1, act=None)
+    bn1 = fluid.layers.batch_norm(conv1, act='relu')
+    pool1 = fluid.layers.pool2d(bn1, 2, 'max', 2)
+    conv2 = fluid.layers.conv2d(pool1, 50, 5, 1, act=None)
+    bn2 = fluid.layers.batch_norm(conv2, act='relu')
+    pool2 = fluid.layers.pool2d(bn2, 2, 'max', 2)
+
+    fc1 = fluid.layers.fc(pool2, size=500, act='relu')
+    fc2 = fluid.layers.fc(fc1, size=class_dim, act='softmax')
+
+    return fc2
+
+
+class TestFetchOp(unittest.TestCase):
+    def parallel_exe(self, train_inputs, seed):
+        main = fluid.Program()
+        startup = fluid.Program()
+        startup.random_seed = seed
+        with fluid.program_guard(main, startup):
+            data = fluid.layers.data(
+                name='image', shape=[3, 224, 224], dtype='float32')
+            label = fluid.layers.data(name='label', shape=[1], dtype='int64')
+            out = Lenet(data, class_dim=102)
+            loss = fluid.layers.cross_entropy(input=out, label=label)
+            loss = fluid.layers.mean(loss)
+
+            opt = fluid.optimizer.Momentum(
+                learning_rate=0.1,
+                momentum=0.9,
+                regularization=fluid.regularizer.L2Decay(1e-4))
+
+            opt.minimize(loss)
+
+            # TODO(zcd): I found that onece the memory optimizer is open,
+            # parallel_exe doesn't fetch some variable, such as conv2d_0.b_0@GRAD,
+            # conv2d_1.b_0@GRAD. Those variables should not be pruned.
+            # fluid.memory_optimize(main)
+
+            place = fluid.CUDAPlace(0)
+            exe = fluid.Executor(place)
+            exe.run(startup)
+
+            feeder = fluid.DataFeeder(place=place, feed_list=[data, label])
+            pe = fluid.ParallelExecutor(
+                use_cuda=True, loss_name=loss.name, main_program=main)
+
+            fetch_list = []
+            all_vars = main.global_block().vars
+            for k, v in all_vars.iteritems():
+                if 'tmp' not in k and k[0] is not '_' or v.persistable:
+                    fetch_list.append(k)
+
+            for data in train_inputs:
+                ret = pe.run(fetch_list, feed=feeder.feed(data))
+                for i in range(len(fetch_list)):
+                    assert not math.isnan(np.sum(ret[i])) and \
+                           not math.isinf(np.sum(ret[i]))
+
+    def test_update_sparse_parameter(self):
+        tst_reader = paddle.batch(flowers.test(use_xmap=False), batch_size=16)
+        tst_reader_iter = tst_reader()
+
+        iters = 3
+        train_inputs = []
+        for i in range(iters):
+            train_inputs.append(tst_reader_iter.next())
+
+        self.parallel_exe(train_inputs, seed=1)
+
+
+if __name__ == '__main__':
+    unittest.main()

python/paddle/fluid/tests/unittests/test_split_var.py

@@ -14,7 +14,7 @@
 
 import math
 import unittest
-from paddle.fluid.distribute_transpiler import split_dense_variable
+from paddle.fluid.transpiler.distribute_transpiler import split_dense_variable
 import paddle.fluid as fluid
 import paddle.fluid.core as core
 import random