提交 494bee51 编写于 作者: C chengduoZH

Merge branch 'develop' of https://github.com/PaddlePaddle/Paddle into feature/fix_parallel_exe

repos:
- repo: https://github.com/Lucas-C/pre-commit-hooks.git
sha: v1.0.1
hooks:
......@@ -25,6 +26,14 @@
entry: bash ./.clang_format.hook -i
language: system
files: \.(c|cc|cxx|cpp|cu|h|hpp|hxx|proto)$
- repo: local
hooks:
- id: cpplint-cpp-source
name: cpplint
description: Check C++ code style using cpplint.py.
entry: bash ./tools/codestyle/cpplint_pre_commit.hook
language: system
files: \.(c|cc|cxx|cpp|cu|h|hpp|hxx)$
- repo: https://github.com/PaddlePaddle/pre-commit-golang
sha: 8337620115c25ff8333f1b1a493bd031049bd7c0
hooks:
......
......@@ -34,7 +34,7 @@ addons:
- automake
- libtool
- ccache
ssh_known_hosts: 52.76.173.135
ssh_known_hosts: 13.229.163.131
before_install:
- if [[ "$JOB" == "check_style" ]]; then sudo ln -s /usr/bin/clang-format-3.8 /usr/bin/clang-format; fi
# Paddle is using protobuf 3.1 currently. Protobuf 3.2 breaks the compatibility. So we specify the python
......
add_custom_target(paddle_apis ALL
DEPENDS paddle_v2_apis paddle_fluid_apis)
add_custom_target(paddle_docs ALL
DEPENDS paddle_v2_docs paddle_v2_docs_cn
paddle_fluid_docs paddle_fluid_docs_cn)
add_subdirectory(v2)
add_subdirectory(fluid)
......@@ -27,6 +27,8 @@ sphinx_add_target(paddle_fluid_docs
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_EN})
add_dependencies(paddle_fluid_docs gen_proto_py)
# configured documentation tools and intermediate build results
set(BINARY_BUILD_DIR_CN "${CMAKE_CURRENT_BINARY_DIR}/cn/_build")
......@@ -47,3 +49,7 @@ sphinx_add_target(paddle_fluid_docs_cn
${SPHINX_CACHE_DIR_CN}
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_CN})
add_dependencies(paddle_fluid_docs_cn gen_proto_py)
add_subdirectory(api)
# configured documentation tools and intermediate build results
set(BINARY_BUILD_DIR_EN "${CMAKE_CURRENT_BINARY_DIR}/en/_build")
# Sphinx cache with pickled ReST documents
set(SPHINX_CACHE_DIR_EN "${CMAKE_CURRENT_BINARY_DIR}/en/_doctrees")
# HTML output director
set(SPHINX_HTML_DIR_EN "${CMAKE_CURRENT_BINARY_DIR}/en/html")
configure_file(
"${CMAKE_CURRENT_SOURCE_DIR}/../../templates/conf.py.en.in"
"${BINARY_BUILD_DIR_EN}/conf.py"
@ONLY)
sphinx_add_target(paddle_fluid_apis
html
${BINARY_BUILD_DIR_EN}
${SPHINX_CACHE_DIR_EN}
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_EN})
add_dependencies(paddle_fluid_apis gen_proto_py framework_py_proto copy_paddle_pybind)
# API Doc Standard
- [API Doc Structure](#API Doc Structure)
- [Format and Examples](#Format and Examples)
- [Complete Example](#Complete Example)
## API Doc Structure
API Doc should contain the following parts(please write them in order):
- Python API Definition
The definition of API
- Function Description
Description of API's function.
The description includes: meaning, purpose and operation on input of API, reference and corresponding link(if any), formula(if necessary) and explanations of key variables in the formula.
- Args Description
Description of API parameters.
Introduce parameters one by one according to the order in API definition.
The introduction includes: data type, default value(if any), meaning, etc.
- Returns
Introduction of API returned value.
Introduce meaning of returned value, provide correspoding format if necessary.
If returned value is a tuple containing multiple parameters, then introduce parameters one by one in order.
- Raises(if any)
Abnormality, error that may occur, and possible reasons. If there are more than one possible abnormity or error, they should be listed in order.
- Note(if any)
Matters needing attention. If there are more than one matters, they should be listed in order.
- Examples
Examples of how to use API.
## Format and Examples
API documentation must obey reStructuredText format, please refer to [here](http://sphinx-doc-zh.readthedocs.io/en/latest/rest.html).
Format and examples of each part of API documantation are as follows: (take fc for example)
- Python API Definition
- Format
[Python API Definition]
- Example
```
fc(input,
size,
num_flatten_dims=1,
param_attr=None,
bias_attr=None,
act=None,
name=None,
main_program=None,
startup_program=None)
```
- Function Description
- Format
This part contains (please write them in order):
[Function Description]
[Formula]
[Symbols' Descriptions if necessary]
[References if necessary]
- Example
[Function Description]
```
**Fully Connected Layer**
The fully connected layer can take multiple tensors as its inputs. It
creates a variable called weights for each input tensor, which represents
a fully connected weight matrix from each input unit to each output unit.
The fully connected layer multiplies each input tensor with its coresponding
weight to produce an output Tensor. If multiple input tensors are given,
the results of multiple multiplications will be sumed up. If bias_attr is
not None, a bias variable will be created and added to the output. Finally,
if activation is not None, it will be applied to the output as well.
```
[Formula]
```
This process can be formulated as follows:
.. math::
Out = Act({\sum_{i=0}^{N-1}X_iW_i + b})
```
[Symbols' Descriptions if necessary]
```
In the above equation:
* :math:`N`: Number of the input.
* :math:`X_i`: The input tensor.
* :math:`W`: The weights created by this layer.
* :math:`b`: The bias parameter created by this layer (if needed).
* :math:`Act`: The activation function.
* :math:`Out`: The output tensor.
```
[References if necessary]
Since there is no need for reference of fc, we omit them here. Under other circumstances, please provide explicit reference and link, take layer_norm for example:
```
Refer to `Layer Normalization <https://arxiv.org/pdf/1607.06450v1.pdf>`_ for more details.
```
- Args Description
- Format
\[Arg's Name\][(Data Type, Default Value)][Description]
- Example
part of fc parameters are as follows:
```
Args:
input (Variable|list of Variable): The input tensor(s) of this layer, and the dimension of
the input tensor(s) is at least 2.
param_attr (ParamAttr|list of ParamAttr, default None): The parameter attribute for learnable
parameters/weights of this layer.
name (str, default None): The name of this layer.
```
- Returns
- Format
[Name][Shape]
- Example
```
Returns:
A tensor variable storing the transformation result.
```
when returned value contain more than one tuple, please introduce every parameter in order, take dynamic_lstm for example:
```
Returns:
A tuple containing:
The hidden state of LSTM whose shape is (T X D).
The cell state of LSTM whose shape is (T X D).
```
- Raises
- Format
[Exception Type][Condition]
- Example
```
Raises:
ValueError: If the rank of the input is less than 2.
```
- Note
- Format
[Note]
- Example
there is no Note in fc, so we omit this part. If there is any note, please write clearly. If there are more than one notes, please list them in order. Take scaled\_dot\_product\_attention for example:
```
Note:
1. When num_heads > 1, three linear projections are learned respectively
to map input queries, keys and values into queries', keys' and values'.
queries', keys' and values' have the same shapes with queries, keys
and values.
2. When num_heads == 1, scaled_dot_product_attention has no learnable
parameters.
```
- Examples
- Format
\[Python Code Snipper]
- Example
```
Examples:
.. code-block:: python
data = fluid.layers.data(name="data", shape=[32, 32], dtype="float32")
fc = fluid.layers.fc(input=data, size=1000, act="tanh")
```
## Complete Example
Complete Example of fc please see [here](src/fc.py)
......@@ -20,13 +20,15 @@ configure_file(
"${BINARY_BUILD_DIR_EN}/conf.py"
@ONLY)
sphinx_add_target(paddle_docs
sphinx_add_target(paddle_v2_docs
html
${BINARY_BUILD_DIR_EN}
${SPHINX_CACHE_DIR_EN}
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_EN})
add_dependencies(paddle_v2_docs gen_proto_py)
# configured documentation tools and intermediate build results
set(BINARY_BUILD_DIR_CN "${CMAKE_CURRENT_BINARY_DIR}/cn/_build")
......@@ -41,11 +43,13 @@ configure_file(
"${BINARY_BUILD_DIR_CN}/conf.py"
@ONLY)
sphinx_add_target(paddle_docs_cn
sphinx_add_target(paddle_v2_docs_cn
html
${BINARY_BUILD_DIR_CN}
${SPHINX_CACHE_DIR_CN}
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_CN})
add_dependencies(paddle_v2_docs_cn gen_proto_py)
add_subdirectory(api)
......@@ -12,9 +12,11 @@ configure_file(
"${BINARY_BUILD_DIR_EN}/conf.py"
@ONLY)
sphinx_add_target(paddle_api_docs
sphinx_add_target(paddle_v2_apis
html
${BINARY_BUILD_DIR_EN}
${SPHINX_CACHE_DIR_EN}
${CMAKE_CURRENT_SOURCE_DIR}
${SPHINX_HTML_DIR_EN})
add_dependencies(paddle_v2_apis gen_proto_py framework_py_proto copy_paddle_pybind)
############################
Install, Build and Unit test
############################
.. _install_faq:
TBD
###############################
Compile, Install, and Unit Test
###############################
.. contents::
1. Insufficient CUDA driver version
----------------------------------------------------------------
Many users usually face issues like `Cuda Error: CUDA driver version is insufficient for CUDA runtime version` when running the PaddlePaddle GPU Docker image. The cause is that you may not map the local CUDA driver to a container directory.
You can solve the issue by running the following commands:
.. code-block:: bash
$ export CUDA_SO="$(\ls usr/lib64/libcuda* | xargs -I{} echo '-v {}:{}') $(\ls /usr/lib64/libnvidia* | xargs -I{} echo '-v {}:{}')"
$ export DEVICES=$(\ls /dev/nvidia* | xargs -I{} echo '--device {}:{}')
$ docker run ${CUDA_SO} ${DEVICES} -it paddlepaddle/paddle:latest-gpu
For more infomation about Docker's installation and usage, please refer to `PaddlePaddle Docker documentation <http://www.paddlepaddle.org/docs/0.11.0/documentation/zh/getstarted/build_and_install/docker_install_en.html>`_ .
2. Version mismatch between PythonLibs and PythonInterpreter
----------------------------------------------------------------
It is a common bug when CMake looks up Python. If you install multiple versions of Python, Cmake may find the version mismatch between PythonLibs and PythonInterpreter . You are forced to specify a Python version, as follows.
.. code-block:: bash
cmake .. -DPYTHON_EXECUTABLE=<exc_path> -DPYTHON_LIBRARY=<lib_path> -DPYTHON_INCLUDE_DIR=<inc_path>
You should specify ``<exc_path>``, ``<lib_path>``, ``<inc_path>`` to your local paths.
3. PaddlePaddle version is 0.0.0
------------------------------------------------
This issue would happen when you run the code `paddle version` or `cmake ..`
.. code-block:: bash
CMake Warning at cmake/version.cmake:20 (message):
Cannot add paddle version from git tag
You should pull all remote branches to your local machine with the command :code:`git fetch upstream` and then run :code:`cmake`
4. paddlepaddle\*.whl is not a supported wheel on this platform.
------------------------------------------------------------------------
The primary cause for this issue is that it can not find the correct PaddlePaddle installation package that matches your current system.The latest PaddlePaddle Python installation package supports Linux x86_64 and MacOS 10.12 os including Python2.7 and Pip 9.0.1.
You can upgrade Pip with the following command\:
.. code-block:: bash
pip install --upgrade pip
If it does not work for you, you can run the command :code:`python -c "import pip; print(pip.pep425tags.get_supported())"` to get the suffix of Python package which your system may support and then compare it with the suffix of your installation.
If the system supports :code:`linux_x86_64` and the installation package is :code:`manylinux1_x86_64`, you should upgrade pip to the latest
if the system supports :code:`manylinux_x86_64` and the local installation package is :code:`linux1_x86_64`, you can rename the whl package to :code:`manylinux1_x86_64` and then try again.
5. ImportError: No module named v2
----------------------------------
Please uninstall Paddle V1 if you have installed it before.
.. code-block:: bash
pip uninstall py_paddle paddle
Then install Python for PaddlePaddle , enter the build directory and run the following commands
pip install python/dist/paddle*.whl && pip install ../paddle/dist/py_paddle*.whl
6. Illegal instruction
-----------------------
This issue may be caused by the wrong usage of PaddlePaddle binary version which uses avx SIMD instructions to increase the performance of cpu. Please choose the correct version.
7. Python unittest fails
--------------------------------
If the following python unittest testcases fail:
.. code-block:: bash
24 - test_PyDataProvider (Failed)
26 - test_RecurrentGradientMachine (Failed)
27 - test_NetworkCompare (Failed)
28 - test_PyDataProvider2 (Failed)
32 - test_Prediction (Failed)
33 - test_Compare (Failed)
34 - test_Trainer (Failed)
35 - test_TrainerOnePass (Failed)
36 - test_CompareTwoNets (Failed)
37 - test_CompareTwoOpts (Failed)
38 - test_CompareSparse (Failed)
39 - test_recurrent_machine_generation (Failed)
40 - test_PyDataProviderWrapper (Failed)
41 - test_config_parser (Failed)
42 - test_swig_api (Failed)
43 - layers_test (Failed)
Please check the PaddlePaddle unittest logs which may suggest the following:
.. code-block:: bash
paddle package is already in your PYTHONPATH. But unittest need a clean environment.
Please uninstall paddle package before start unittest. Try to 'pip uninstall paddle'.
The solution is:
* Remove old PaddlePaddle to make a clean environment for the unit tests. If PaddlePaddle package is already in Python's site-packages, unit tests would refer Python package in site-packages instead of Python package in the :code:`/python` directory of the source directory. Setting :code:`PYTHONPATH` to :code:`/python` is also useless because Python's search path would give the priority to the installed Python package.
8. Failed to download the MKLML library
----------------------------------------------
.. code-block:: bash
make[2]: *** [third_party/mklml/src/extern_mklml-stamp/extern_mklml-download] error 4
make[1]: *** [CMakeFiles/extern_mklml.dir/all] error 2
make[1]: *** waiting for the unfinished jobs....
Cause: The network speed or SSL link causes the MKLML library to download unsuccessfully.
The solution is: manually download and install, the specific steps are as follows.
.. code-block:: bash
// 1. enter the directory
cd build/third_party/mklml/src/extern_mklml
// 2. check the size of the package, normally 75M, if less than 75M, the download fails
du -sh mklml_lnx_2018.0.1.20171007.tgz
// 3. manually download and unzip and make the download success tag:
wget --no-check-certificate https://github.com/01org/mkl-dnn/releases/download/v0.11/mklml_lnx_2018.0.1.20171007.tgz -c -O mklml_lnx_2018.0.1.20171007.tgz
tar zxf mklml_lnx_2018.0.1.20171007.tgz
touch ../extern_mklml-stamp/extern_mklml-download
// 4. then compile
......@@ -2,10 +2,25 @@
Set Command-line Parameters
===========================
The implementation of deep learning algorithms has a variety of characteristics, such as running environment, running stage, structure of the model and the traning strategy. PaddlePaddle supports the user to set various command-line parameters flexibly, which helps to achieve control of the model training or prediction process.
In this part, we take several actual scenarios as an example, and the use of some command-line parameters is displayed:
.. toctree::
:maxdepth: 1
use_case_en.md
Then, we summarize and classify the use of all command-line parameters:
.. toctree::
:maxdepth: 1
arguments_en.md
Finally, the detailed descriptions are given, and we try to explain the propeties and significance of these command-line parameters in detail:
.. toctree::
:maxdepth: 1
detail_introduction_en.md
......@@ -104,7 +104,7 @@ cc_test(init_test SRCS init_test.cc DEPS init)
cc_test(op_kernel_type_test SRCS op_kernel_type_test.cc DEPS place device_context framework_proto)
cc_test(cow_ptr_tests SRCS details/cow_ptr_test.cc)
# cc_test(channel_test SRCS channel_test.cc)
cc_test(channel_test SRCS channel_test.cc)
cc_test(tuple_test SRCS tuple_test.cc )
cc_test(concurrency_test SRCS concurrency_test.cc DEPS go_op channel_close_op channel_create_op
channel_send_op channel_recv_op sum_op select_op elementwise_add_op compare_op
......
......@@ -138,8 +138,8 @@ void ChannelImpl<T>::Send(T *item) {
// If channel is closed, throw exception
if (closed_) {
lock.unlock();
send_return();
lock.unlock();
PADDLE_THROW("Cannot send on closed channel");
}
......@@ -152,11 +152,9 @@ void ChannelImpl<T>::Send(T *item) {
if (m != nullptr) {
*(m->data) = std::move(*item);
m->Notify();
lock.unlock();
send_return();
return;
} else {
lock.unlock();
Send(item);
send_return();
return;
......@@ -169,8 +167,6 @@ void ChannelImpl<T>::Send(T *item) {
if (buf_.size() < cap_) {
// Copy to buffer
buf_.push_back(std::move(*item));
// Release lock and return true
lock.unlock();
send_return();
return;
}
......@@ -181,8 +177,8 @@ void ChannelImpl<T>::Send(T *item) {
sendq.push_back(m);
m->Wait(lock);
if (m->chan_closed) {
lock.unlock();
send_return();
lock.unlock();
PADDLE_THROW("Cannot send on closed channel");
}
send_return();
......@@ -195,10 +191,7 @@ bool ChannelImpl<T>::Receive(T *item) {
// If channel is closed and buffer is empty or
// channel is unbuffered
if (closed_ && buf_.empty()) {
lock.unlock();
return recv_return(false);
}
if (closed_ && buf_.empty()) return recv_return(false);
// If there is a sender, directly receive the value we want
// from the sender. In case of a buffered channel, read from
......@@ -229,7 +222,6 @@ bool ChannelImpl<T>::Receive(T *item) {
} else
return recv_return(Receive(item));
}
lock.unlock();
return recv_return(true);
}
......@@ -238,8 +230,7 @@ bool ChannelImpl<T>::Receive(T *item) {
// Directly read from buffer
*item = std::move(buf_.front());
buf_.pop_front();
// Release lock and return true
lock.unlock();
// return true
return recv_return(true);
}
......
......@@ -22,7 +22,7 @@
namespace paddle {
namespace framework {
namespace details {
struct OpHandleBase;
class OpHandleBase;
// VarHandleBase is the var node in the dependency graph.
// A variable can only be generated by a single operator. i.e.
......
......@@ -13,9 +13,9 @@ See the License for the specific language governing permissions and
limitations under the License. */
#include "paddle/fluid/framework/parallel_executor.h"
#include <string>
#include "ThreadPool.h"
#include <string>
#include <vector>
#ifdef PADDLE_WITH_CUDA
#include "paddle/fluid/platform/nccl_helper.h"
......
......@@ -2,7 +2,8 @@ if(WITH_DISTRIBUTE)
grpc_library(sendrecvop_grpc SRCS bytebuffer_stream.cc sendrecvop_utils.cc grpc_client.cc
grpc_server.cc variable_response.cc PROTO send_recv.proto DEPS lod_tensor selected_rows)
set(DISTRIBUTE_COMPILE_FLAGS "-Wno-non-virtual-dtor -Wno-error=non-virtual-dtor -Wno-error=delete-non-virtual-dtor")
set_source_files_properties(test_serde.cc PROPERTIES COMPILE_FLAGS ${DISTRIBUTE_COMPILE_FLAGS})
cc_test(serde_test SRCS test_serde.cc variable_response.cc DEPS grpc++_unsecure grpc_unsecure gpr
set_source_files_properties(serde_test.cc grpc_server_test.cc PROPERTIES COMPILE_FLAGS ${DISTRIBUTE_COMPILE_FLAGS})
cc_test(serde_test SRCS serde_test.cc variable_response.cc DEPS grpc++_unsecure grpc_unsecure gpr
cares zlib protobuf sendrecvop_grpc)
cc_test(grpc_server_test SRCS grpc_server_test.cc DEPS sendrecvop_grpc grpc++_unsecure grpc_unsecure gpr cares zlib protobuf)
endif()
......@@ -12,8 +12,10 @@ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#include "grpc_client.h"
#include <sys/time.h>
#include "paddle/fluid/operators/detail/grpc_client.h"
#include <limits>
#include "paddle/fluid/framework/threadpool.h"
namespace paddle {
......@@ -52,7 +54,7 @@ bool RPCClient::AsyncSendVariable(const std::string& ep,
auto call = s->stub_g_.PrepareUnaryCall(
s->context_.get(), "/sendrecv.SendRecvService/SendVariable", req, &cq_);
call->StartCall();
call->Finish(&s->reply_, &s->status_, (void*)s);
call->Finish(&s->reply_, &s->status_, static_cast<void*>(s));
});
req_count_++;
......@@ -70,8 +72,7 @@ void ProcGetResponse(const VarHandle& var_h,
template <typename T>
void RequestToByteBuffer(const T& proto, ::grpc::ByteBuffer* result) {
::grpc::Slice slice(proto.ByteSizeLong());
proto.SerializeWithCachedSizesToArray(
const_cast<uint8_t*>(reinterpret_cast<const uint8_t*>(slice.begin())));
proto.SerializeWithCachedSizesToArray(const_cast<uint8_t*>(slice.begin()));
::grpc::ByteBuffer tmp(&slice, 1);
result->Swap(&tmp);
}
......@@ -109,7 +110,7 @@ bool RPCClient::AsyncGetVariable(const std::string& ep,
auto call = s->stub_g_.PrepareUnaryCall(
s->context_.get(), "/sendrecv.SendRecvService/GetVariable", buf, &cq_);
call->StartCall();
call->Finish(&s->reply_, &s->status_, (void*)s);
call->Finish(&s->reply_, &s->status_, static_cast<void*>(s));
});
req_count_++;
......@@ -150,9 +151,10 @@ bool RPCClient::AsyncPrefetchVariable(const std::string& ep,
s->response_call_back_ = ProcGetResponse;
auto call = s->stub_g_.PrepareUnaryCall(
s->context_.get(), "/sendrecv.SendRecvService/GetVariable", req, &cq_);
s->context_.get(), "/sendrecv.SendRecvService/PrefetchVariable", req,
&cq_);
call->StartCall();
call->Finish(&s->reply_, &s->status_, (void*)s);
call->Finish(&s->reply_, &s->status_, static_cast<void*>(s));
});
req_count_++;
......@@ -168,7 +170,7 @@ void RPCClient::AsyncSendBatchBarrier(const std::string& ep, int64_t time_out) {
sendrecv::VariableMessage req;
req.set_varname(BATCH_BARRIER_MESSAGE);
auto rpc = s->stub_->AsyncSendVariable(s->context_.get(), req, &cq_);
rpc->Finish(&s->reply_, &s->status_, (void*)s);
rpc->Finish(&s->reply_, &s->status_, static_cast<void*>(s));
req_count_++;
}
......@@ -180,7 +182,7 @@ void RPCClient::AsyncSendFetchBarrier(const std::string& ep, int64_t time_out) {
sendrecv::VariableMessage req;
req.set_varname(FETCH_BARRIER_MESSAGE);
auto rpc = s->stub_->AsyncGetVariable(s->context_.get(), req, &cq_);
rpc->Finish(&s->reply_, &s->status_, (void*)s);
rpc->Finish(&s->reply_, &s->status_, static_cast<void*>(s));
req_count_++;
}
......
......@@ -14,6 +14,9 @@ limitations under the License. */
#include "paddle/fluid/operators/detail/grpc_server.h"
#include <limits>
#include <string>
using ::grpc::ServerAsyncResponseWriter;
namespace paddle {
......@@ -128,6 +131,49 @@ class RequestGet final : public RequestBase {
SimpleBlockQueue<MessageWithName>* queue_;
};
class RequestPrefetch final : public RequestBase {
public:
explicit RequestPrefetch(GrpcService::AsyncService* service,
::grpc::ServerCompletionQueue* cq,
framework::Scope* scope,
const platform::DeviceContext* dev_ctx,
framework::Executor* executor,
framework::ProgramDesc* program, int blkid)
: RequestBase(service, cq, dev_ctx),
responder_(&ctx_),
scope_(scope),
executor_(executor),
program_(program),
blkid_(blkid) {
int method_id = static_cast<int>(detail::GrpcMethod::kPrefetchVariable);
service_->RequestAsyncUnary(method_id, &ctx_, &request_, &responder_, cq_,
cq_, this);
}
virtual ~RequestPrefetch() {}
virtual std::string GetReqName() { return request_.varname(); }
virtual void Process() {
// prefetch process...
::grpc::ByteBuffer reply;
// TODO(Yancey1989): execute the Block which containers prefetch ops
VLOG(3) << "RequestPrefetch Process in";
responder_.Finish(reply, ::grpc::Status::OK, this);
status_ = FINISH;
}
protected:
sendrecv::VariableMessage request_;
ServerAsyncResponseWriter<::grpc::ByteBuffer> responder_;
framework::Scope* scope_;
framework::Executor* executor_;
framework::ProgramDesc* program_;
int blkid_;
};
void AsyncGRPCServer::WaitClientGet(int count) {
int fetch_barriers = 0;
while (fetch_barriers < count) {
......@@ -147,6 +193,7 @@ void AsyncGRPCServer::RunSyncUpdate() {
cq_send_ = builder.AddCompletionQueue();
cq_get_ = builder.AddCompletionQueue();
cq_prefetch_ = builder.AddCompletionQueue();
server_ = builder.BuildAndStart();
LOG(INFO) << "Server listening on " << address_ << std::endl;
......@@ -155,6 +202,8 @@ void AsyncGRPCServer::RunSyncUpdate() {
std::bind(&AsyncGRPCServer::TryToRegisterNewSendOne, this);
std::function<void()> get_register =
std::bind(&AsyncGRPCServer::TryToRegisterNewGetOne, this);
std::function<void()> prefetch_register =
std::bind(&AsyncGRPCServer::TryToRegisterNewPrefetchOne, this);
t_send_.reset(
new std::thread(std::bind(&AsyncGRPCServer::HandleRequest, this,
......@@ -163,29 +212,34 @@ void AsyncGRPCServer::RunSyncUpdate() {
t_get_.reset(
new std::thread(std::bind(&AsyncGRPCServer::HandleRequest, this,
cq_get_.get(), "cq_get", get_register)));
t_prefetch_.reset(new std::thread(
std::bind(&AsyncGRPCServer::HandleRequest, this, cq_prefetch_.get(),
"cq_prefetch", prefetch_register)));
// wait server
server_->Wait();
t_send_->join();
t_get_->join();
t_prefetch_->join();
}
void AsyncGRPCServer::ShutdownQueue() {
std::unique_lock<std::mutex> lock(cq_mutex_);
cq_send_->Shutdown();
cq_get_->Shutdown();
is_shut_down_ = true;
cq_prefetch_->Shutdown();
}
// This URL explains why shutdown is complicate:
void AsyncGRPCServer::ShutDown() {
server_->Shutdown();
is_shut_down_ = true;
ShutdownQueue();
server_->Shutdown();
}
void AsyncGRPCServer::TryToRegisterNewSendOne() {
std::unique_lock<std::mutex> lock(cq_mutex_);
if (is_shut_down_) {
VLOG(3) << "shutdown, do not TryToRegisterNewSendOne";
return;
}
RequestSend* send = new RequestSend(&service_, cq_send_.get(), scope_,
......@@ -196,6 +250,7 @@ void AsyncGRPCServer::TryToRegisterNewSendOne() {
void AsyncGRPCServer::TryToRegisterNewGetOne() {
std::unique_lock<std::mutex> lock(cq_mutex_);
if (is_shut_down_) {
VLOG(3) << "shutdown, do not TryToRegisterNewGetOne";
return;
}
RequestGet* get = new RequestGet(&service_, cq_get_.get(), scope_, dev_ctx_,
......@@ -203,6 +258,19 @@ void AsyncGRPCServer::TryToRegisterNewGetOne() {
VLOG(4) << "Create RequestGet status:" << get->Status();
}
void AsyncGRPCServer::TryToRegisterNewPrefetchOne() {
std::unique_lock<std::mutex> lock(cq_mutex_);
if (is_shut_down_) {
VLOG(3) << "shutdown, do not TryToRegisterNewPrefetchOne";
return;
}
RequestPrefetch* prefetch =
new RequestPrefetch(&service_, cq_prefetch_.get(), scope_, dev_ctx_,
executor_, program_, prefetch_blk_id_);
VLOG(4) << "Create RequestPrefetch status:" << prefetch->Status();
}
// FIXME(typhoonzero): change cq_name to enum.
void AsyncGRPCServer::HandleRequest(::grpc::ServerCompletionQueue* cq,
std::string cq_name,
......@@ -211,25 +279,28 @@ void AsyncGRPCServer::HandleRequest(::grpc::ServerCompletionQueue* cq,
void* tag = NULL;
bool ok = false;
while (true) {
VLOG(3) << "HandleRequest for " << cq_name << " while in";
if (!cq->Next(&tag, &ok)) {
LOG(INFO) << cq_name << " get CompletionQueue shutdown!";
LOG(INFO) << cq_name << " CompletionQueue shutdown!";
break;
}
VLOG(3) << "HandleRequest for " << cq_name << " while after Next";
PADDLE_ENFORCE(tag);
// FIXME(typhoonzero): de-couple the barriers with recv_op
if (cq_name == "cq_get") WaitCond(1);
if (cq_name == "cq_send") WaitCond(0);
if (!is_shut_down_ && cq_name == "cq_get") WaitCond(1);
if (!is_shut_down_ && cq_name == "cq_send") WaitCond(0);
RequestBase* base = (RequestBase*)tag;
RequestBase* base = reinterpret_cast<RequestBase*>(tag);
// reference:
// https://github.com/tensorflow/tensorflow/issues/5596
// https://groups.google.com/forum/#!topic/grpc-io/xftlRy-IQwM
// https://groups.google.com/forum/#!topic/grpc-io/ywATt88Ef_I
if (!ok) {
LOG(WARNING) << cq_name << " recv no regular event:argument name"
<< base->GetReqName();
LOG(WARNING) << cq_name << " recv no regular event:argument name["
<< base->GetReqName() << "]";
TryToRegisterNewOne();
delete base;
continue;
......
......@@ -15,9 +15,12 @@ limitations under the License. */
#pragma once
#include <grpc++/grpc++.h>
#include <thread>
#include <string>
#include <utility>
#include "paddle/fluid/framework/executor.h"
#include "paddle/fluid/framework/lod_tensor.h"
#include "paddle/fluid/framework/program_desc.h"
#include "paddle/fluid/framework/scope.h"
#include "paddle/fluid/framework/selected_rows.h"
#include "paddle/fluid/framework/var_type.h"
......@@ -53,6 +56,12 @@ class AsyncGRPCServer final {
void SetDevCtx(const platform::DeviceContext *dev_ctx) { dev_ctx_ = dev_ctx; }
void SetProgram(framework::ProgramDesc *program) { program_ = program; }
void SetPrefetchBlkdId(int blkid) { prefetch_blk_id_ = blkid; }
void SetExecutor(framework::Executor *executor) { executor_ = executor; }
const ReceivedMessage Get() { return this->var_recv_queue_.Pop(); }
void Push(const std::string &msg_name) {
......@@ -66,6 +75,7 @@ class AsyncGRPCServer final {
std::function<void()> TryToRegisterNewOne);
void TryToRegisterNewSendOne();
void TryToRegisterNewGetOne();
void TryToRegisterNewPrefetchOne();
void ShutdownQueue();
private:
......@@ -73,6 +83,7 @@ class AsyncGRPCServer final {
volatile bool is_shut_down_ = false;
std::unique_ptr<::grpc::ServerCompletionQueue> cq_send_;
std::unique_ptr<::grpc::ServerCompletionQueue> cq_get_;
std::unique_ptr<::grpc::ServerCompletionQueue> cq_prefetch_;
GrpcService::AsyncService service_;
std::unique_ptr<::grpc::Server> server_;
......@@ -83,6 +94,7 @@ class AsyncGRPCServer final {
// received variable from RPC, operators fetch variable from this queue.
SimpleBlockQueue<MessageWithName> var_get_queue_;
// client send variable to this queue.
ReceivedQueue var_recv_queue_;
// condition of the sub program
......@@ -92,6 +104,11 @@ class AsyncGRPCServer final {
std::unique_ptr<std::thread> t_send_;
std::unique_ptr<std::thread> t_get_;
std::unique_ptr<std::thread> t_prefetch_;
int prefetch_blk_id_;
framework::ProgramDesc *program_;
framework::Executor *executor_;
};
}; // namespace detail
......
/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#include <unistd.h>
#include <string>
#include <thread>
#include "gtest/gtest.h"
#include "paddle/fluid/operators/detail/grpc_client.h"
#include "paddle/fluid/operators/detail/grpc_server.h"
namespace framework = paddle::framework;
namespace platform = paddle::platform;
namespace detail = paddle::operators::detail;
std::unique_ptr<detail::AsyncGRPCServer> rpc_service_;
void StartServer(const std::string& endpoint) {
rpc_service_.reset(new detail::AsyncGRPCServer(endpoint));
rpc_service_->RunSyncUpdate();
}
TEST(PREFETCH, CPU) {
// start up a server instance backend
// TODO(Yancey1989): Need to start a server with optimize blocks and
// prefetch blocks.
std::thread server_thread(StartServer, "127.0.0.1:8889");
framework::Scope scope;
platform::CPUPlace place;
platform::CPUDeviceContext ctx(place);
// create var on local scope
std::string in_var_name("in");
std::string out_var_name("out");
auto* in_var = scope.Var(in_var_name);
auto* in_tensor = in_var->GetMutable<framework::LoDTensor>();
in_tensor->Resize({10, 10});
VLOG(3) << "before mutable_data";
in_tensor->mutable_data<int>(place);
scope.Var(out_var_name);
VLOG(3) << "before fetch";
detail::RPCClient client;
client.AsyncPrefetchVariable("127.0.0.1:8889", ctx, scope, in_var_name,
out_var_name);
client.Wait();
rpc_service_->ShutDown();
server_thread.join();
rpc_service_.reset(nullptr);
}
......@@ -76,10 +76,11 @@ namespace detail {
enum class GrpcMethod {
kSendVariable,
kGetVariable,
kPrefetchVariable,
};
static const int kGrpcNumMethods =
static_cast<int>(GrpcMethod::kGetVariable) + 1;
static_cast<int>(GrpcMethod::kPrefetchVariable) + 1;
inline const char* GrpcMethodName(GrpcMethod id) {
switch (id) {
......@@ -87,6 +88,8 @@ inline const char* GrpcMethodName(GrpcMethod id) {
return "/sendrecv.SendRecvService/SendVariable";
case GrpcMethod::kGetVariable:
return "/sendrecv.SendRecvService/GetVariable";
case GrpcMethod::kPrefetchVariable:
return "/sendrecv.SendRecvService/PrefetchVariable";
}
// Shouldn't be reached.
......@@ -114,5 +117,5 @@ class GrpcService final {
};
} // namespace detail
} // namespace operator
} // namespace operators
} // namespace paddle
......@@ -21,6 +21,8 @@ service SendRecvService {
rpc SendVariable(VariableMessage) returns (VoidMessage) {}
// Argument VariableMessage for GetVariable should only contain varname.
rpc GetVariable(VariableMessage) returns (VariableMessage) {}
// Prefetch variable by Ids
rpc PrefetchVariable(VariableMessage) returns (VariableMessage) {}
}
// VariableMessage is serialized paddle variable message.
......
......@@ -11,9 +11,10 @@ distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#pragma once
#include <random>
#include "paddle/fluid/framework/eigen.h"
#include "paddle/fluid/framework/op_registry.h"
......
......@@ -13,8 +13,10 @@ See the License for the specific language governing permissions and
limitations under the License. */
#include <unistd.h>
#include <string>
#include <thread>
#include <thread> // NOLINT
#include <vector>
#include "gtest/gtest.h"
#include "paddle/fluid/framework/op_registry.h"
......@@ -30,9 +32,9 @@ namespace m = paddle::operators::math;
USE_OP(dropout);
void Compare(f::Scope& scope, p::DeviceContext& ctx) {
void Compare(f::Scope* scope, const p::DeviceContext& ctx) {
// init
auto var = scope.Var("X");
auto var = scope->Var("X");
auto tensor = var->GetMutable<f::LoDTensor>();
tensor->Resize({10, 10});
......@@ -44,12 +46,12 @@ void Compare(f::Scope& scope, p::DeviceContext& ctx) {
TensorFromVector(init, ctx, tensor);
auto place = ctx.GetPlace();
auto out_var = scope.Var("Out");
auto out_var = scope->Var("Out");
auto out_tensor = out_var->GetMutable<f::LoDTensor>();
out_tensor->Resize({10, 10});
out_tensor->mutable_data<float>(place); // allocate
auto mask_var = scope.Var("Mask");
auto mask_var = scope->Var("Mask");
auto mask_tensor = mask_var->GetMutable<f::LoDTensor>();
mask_tensor->Resize({10, 10});
mask_tensor->mutable_data<float>(place); // allocate
......@@ -63,7 +65,7 @@ void Compare(f::Scope& scope, p::DeviceContext& ctx) {
auto dropout_op = f::OpRegistry::CreateOp(
"dropout", {{"X", {"X"}}}, {{"Out", {"Out"}}, {"Mask", {"Mask"}}}, attrs);
dropout_op->Run(scope, place);
dropout_op->Run(*scope, place);
std::vector<float> out_vec;
TensorToVector(*out_tensor, ctx, &out_vec);
......@@ -81,6 +83,11 @@ void Compare(f::Scope& scope, p::DeviceContext& ctx) {
}
}
// TODO(wyi): Due to
// https://github.com/PaddlePaddle/Paddle/issues/9507, I temporarily
// disable this test to remove the prevention of the merge of
// unrelated PRs.
/*
TEST(Dropout, CPUDense) {
f::Scope scope;
p::CPUPlace place;
......@@ -94,3 +101,4 @@ TEST(Dropout, GPUDense) {
p::CUDADeviceContext ctx(place);
Compare(scope, ctx);
}
*/
......@@ -13,22 +13,13 @@ See the License for the specific language governing permissions and
limitations under the License. */
#include <stdint.h>
#include <sys/stat.h>
#include <ostream>
#include <thread>
#include <unistd.h>
#include "paddle/fluid/framework/executor.h"
#include "paddle/fluid/framework/framework.pb.h"
#include "paddle/fluid/framework/lod_tensor.h"
#include "paddle/fluid/framework/op_registry.h"
#include "paddle/fluid/framework/proto_desc.h"
#include "paddle/fluid/framework/threadpool.h"
#include "paddle/fluid/operators/detail/grpc_server.h"
#include "paddle/fluid/operators/detail/sendrecvop_utils.h"
#include "paddle/fluid/operators/detail/simple_block_queue.h"
#include "paddle/fluid/string/printf.h"
namespace paddle {
namespace operators {
......@@ -88,7 +79,6 @@ class ListenAndServOp : public framework::OperatorBase {
void Stop() override {
rpc_service_->Push(LISTEN_TERMINATE_MESSAGE);
rpc_service_->ShutDown();
server_thread_->join();
}
......@@ -112,6 +102,11 @@ class ListenAndServOp : public framework::OperatorBase {
framework::Executor executor(dev_place);
// TODO(qiao) set proper fields for table lookup and update
rpc_service_->SetExecutor(&executor);
rpc_service_->SetPrefetchBlkdId(0);
rpc_service_->SetProgram(program);
// TODO(typhoonzero): change this to a while_op for every cluster-batch.
bool exit_flag = false;
// Record received sparse variables, so that
......@@ -174,7 +169,8 @@ class ListenAndServOp : public framework::OperatorBase {
}
ParallelExecuteBlocks(parallel_blkids, &executor, program, &recv_scope);
VLOG(2) << "run all blocks spent (ms) " << detail::GetTimestamp() - ts;
VLOG(3) << "run all blocks spent " << detail::GetTimestamp() - ts
<< "(ms)";
// Reset the received sparse variables, the sum operator would not
// sum the input sparse variables which rows is empty at the next
......
......@@ -214,7 +214,10 @@ class LRNOpMaker : public framework::OpProtoAndCheckerMaker {
"Defaults to \"NHWC\". Specify the data format of the output data, "
"the input will be transformed automatically. ")
.SetDefault("AnyLayout");
AddAttr<bool>("is_test", "").SetDefault(false);
AddAttr<bool>("is_test",
"Turns on memory optimization that optimizes away "
"unnecessary memory allocations. Used by MKLDNN.")
.SetDefault(false);
AddComment(R"DOC(
Local Response Normalization Operator.
......
......@@ -121,6 +121,10 @@ class LRNGradKernel : public framework::OpKernel<T> {
T alpha = ctx.Attr<T>("alpha");
T beta = ctx.Attr<T>("beta");
PADDLE_ENFORCE(
!ctx.Attr<bool>("is_test"),
"is_test attribute should be set to False in training phase.");
LRNGradFunctor<DeviceContext, T> f;
f(ctx, x, out, mid, x_g, out_g, N, C, H, W, n, alpha, beta);
}
......
......@@ -137,6 +137,8 @@ class NCCLTester : public ::testing::Test {
TEST_F(NCCLTester, ncclInitOp) {}
// ncclAllReduceOp with desc
// TODO(helin): https://github.com/PaddlePaddle/Paddle/issues/9367
/*
TEST_F(NCCLTester, ncclAllReduceOp) {
std::unique_ptr<f::OpDesc> op2(new f::OpDesc);
op2->SetType("ncclAllReduce");
......@@ -184,6 +186,7 @@ TEST_F(NCCLTester, ncclAllReduceOp) {
}
}
}
*/
// ncclReduceOp with desc
TEST_F(NCCLTester, ncclReduceOp) {
......@@ -236,6 +239,8 @@ TEST_F(NCCLTester, ncclReduceOp) {
}
// ncclBcastOp with desc
// TODO(helin): https://github.com/PaddlePaddle/Paddle/issues/9540
/*
TEST_F(NCCLTester, ncclBcastOp) {
std::unique_ptr<f::OpDesc> op2(new f::OpDesc);
const int kRoot = 0;
......@@ -281,3 +286,4 @@ TEST_F(NCCLTester, ncclBcastOp) {
ASSERT_NEAR(ct[j], result, 1e-5);
}
}
*/
......@@ -20,12 +20,29 @@ namespace paddle {
namespace operators {
namespace reader {
static constexpr size_t kDoubleBufferSize = 2;
// 'Double buffer' means we shall maintain two batches of input data at the same
// time. So the kCacheSize shoul be at least 2.
static constexpr size_t kCacheSize = 2;
// There will be two bacthes out of the channel during training:
// 1. the one waiting to be sent to the channel
// 2. the one just be received from the channel, which is also being used by
// subsequent operators.
// So the channel size should be kChacheSize - 2
static constexpr size_t kChannelSize = 0; // kCacheSize - 2
class DoubleBufferReader : public framework::DecoratedReader {
public:
struct Item {
Item() : ctx_(nullptr) {}
Item(Item&& b) {
payloads_ = std::move(b.payloads_);
ctx_ = std::move(b.ctx_);
}
Item& operator=(Item&& b) {
payloads_ = std::move(b.payloads_);
ctx_ = std::move(b.ctx_);
return *this;
}
std::vector<framework::LoDTensor> payloads_;
platform::DeviceContext* ctx_;
......@@ -34,42 +51,44 @@ class DoubleBufferReader : public framework::DecoratedReader {
explicit DoubleBufferReader(
ReaderBase* reader, platform::Place target_place = platform::CPUPlace())
: DecoratedReader(reader), place_(target_place) {
for (size_t i = 0; i < kDoubleBufferSize; ++i) {
if (platform::is_gpu_place(place_)) {
#ifdef PADDLE_WITH_CUDA
for (size_t i = 0; i < kCacheSize; ++i) {
if (platform::is_gpu_place(place_)) {
ctxs_.emplace_back(new platform::CUDADeviceContext(
boost::get<platform::CUDAPlace>(place_)));
#endif
}
}
start_thread();
}
void start_thread() {
buffer_ = framework::MakeChannel<Item>(kDoubleBufferSize);
prefetcher_ = std::thread([this] { PrefetchThreadFunc(); });
#endif
StartPrefetcher();
}
bool HasNext() const override;
void ReadNext(std::vector<framework::LoDTensor>* out) override;
void ReInit() override;
~DoubleBufferReader() {
buffer_->Close();
prefetcher_.join();
delete buffer_;
~DoubleBufferReader() { EndPrefetcher(); }
private:
void StartPrefetcher() {
channel_ = framework::MakeChannel<Item>(kChannelSize);
prefetcher_ = std::thread([this] { PrefetchThreadFunc(); });
}
bool HasNext() const override;
void EndPrefetcher() {
channel_->Close();
if (prefetcher_.joinable()) {
prefetcher_.join();
}
delete channel_;
channel_ = nullptr;
}
private:
void PrefetchThreadFunc();
std::thread prefetcher_;
framework::Channel<Item>* buffer_;
framework::Channel<Item>* channel_;
platform::Place place_;
std::vector<std::unique_ptr<platform::DeviceContext>> ctxs_;
mutable Item local_buffer_;
};
class CreateDoubleBufferReaderOp : public framework::OperatorBase {
......@@ -123,70 +142,70 @@ class CreateDoubleBufferReaderOpMaker : public DecoratedReaderMakerBase {
}
};
bool DoubleBufferReader::HasNext() const {
while (!channel_->IsClosed() && !channel_->CanReceive()) {
}
return channel_->CanReceive();
}
void DoubleBufferReader::ReadNext(std::vector<framework::LoDTensor>* out) {
if (!HasNext()) {
PADDLE_THROW("There is no next data!");
}
if (local_buffer_.payloads_.empty()) {
buffer_->Receive(&local_buffer_);
}
*out = local_buffer_.payloads_;
local_buffer_.payloads_.clear();
if (local_buffer_.ctx_) {
local_buffer_.ctx_->Wait();
Item batch;
channel_->Receive(&batch);
*out = batch.payloads_;
if (batch.ctx_) {
batch.ctx_->Wait();
}
}
void DoubleBufferReader::ReInit() {
reader_->ReInit();
buffer_->Close();
prefetcher_.join();
delete buffer_;
start_thread();
EndPrefetcher();
StartPrefetcher();
}
void DoubleBufferReader::PrefetchThreadFunc() {
VLOG(5) << "A new prefetch thread starts.";
size_t gpu_ctx_offset = 0;
std::vector<std::vector<framework::LoDTensor>> cpu_tensor_cache(kCacheSize);
std::vector<std::vector<framework::LoDTensor>> gpu_tensor_cache(kCacheSize);
size_t cached_tensor_id = 0;
while (reader_->HasNext()) {
Item batch;
reader_->ReadNext(&batch.payloads_);
auto& cpu_batch = cpu_tensor_cache[cached_tensor_id];
reader_->ReadNext(&cpu_batch);
if (platform::is_gpu_place(place_)) {
std::vector<framework::LoDTensor> gpu_batch;
auto& gpu_ctx = this->ctxs_[gpu_ctx_offset++];
gpu_ctx_offset %= this->ctxs_.size();
gpu_batch.resize(batch.payloads_.size());
for (size_t i = 0; i < batch.payloads_.size(); ++i) {
framework::TensorCopy(batch.payloads_[i], place_, *gpu_ctx,
&gpu_batch[i]);
gpu_batch[i].set_lod(batch.payloads_[i].lod());
auto& gpu_batch = gpu_tensor_cache[cached_tensor_id];
auto* gpu_ctx = ctxs_[cached_tensor_id].get();
gpu_batch.resize(cpu_batch.size());
for (size_t i = 0; i < cpu_batch.size(); ++i) {
framework::TensorCopy(cpu_batch[i], place_, *gpu_ctx, &gpu_batch[i]);
gpu_batch[i].set_lod(cpu_batch[i].lod());
}
batch.ctx_ = gpu_ctx.get();
std::swap(gpu_batch, batch.payloads_);
batch.payloads_ = gpu_batch;
batch.ctx_ = gpu_ctx;
} else {
// CPUPlace
batch.payloads_ = cpu_batch;
}
++cached_tensor_id;
cached_tensor_id %= kCacheSize;
try {
buffer_->Send(&batch);
channel_->Send(&batch);
} catch (paddle::platform::EnforceNotMet e) {
VLOG(5) << "WARNING: The double buffer channel has been closed. The "
"prefetch thread will terminate.";
break;
}
}
buffer_->Close();
channel_->Close();
VLOG(5) << "Prefetch thread terminates.";
}
bool DoubleBufferReader::HasNext() const {
if (local_buffer_.payloads_.empty()) {
bool ok = buffer_->Receive(&local_buffer_);
return ok;
} else {
return true;
}
}
} // namespace reader
} // namespace operators
} // namespace paddle
......
......@@ -17,90 +17,66 @@ limitations under the License. */
namespace paddle {
namespace operators {
class ReshapeOp : public framework::OperatorWithKernel {
public:
ReshapeOp(const std::string &type, const framework::VariableNameMap &inputs,
const framework::VariableNameMap &outputs,
const framework::AttributeMap &attrs)
: OperatorWithKernel(type, inputs, outputs, attrs) {}
void InferShape(framework::InferShapeContext *ctx) const override {
// input check
PADDLE_ENFORCE(ctx->HasInput("X"),
"Input(X) of ReshapeOp should not be null.");
PADDLE_ENFORCE(ctx->HasOutput("Out"),
"Output(Out) of ReshapeOp should not be null.");
auto shape = ctx->Attrs().Get<std::vector<int>>("shape");
PADDLE_ENFORCE(shape.size() > 0, "Attr(shape) shouldn't be empty.");
auto x_dims = ctx->GetInputDim("X");
std::vector<size_t> neg_dims_idx;
// set some dimension to -1 if it is unknown
const int unknown_size = -1;
for (size_t i = 0; i < shape.size(); ++i) {
PADDLE_ENFORCE(shape[i] > 0 || shape[i] == unknown_size,
"Each dimension of Attr(shape) must be positive or %d.",
unknown_size);
if (shape[i] == unknown_size) {
neg_dims_idx.push_back(i);
PADDLE_ENFORCE(neg_dims_idx.size() <= 1,
"Only one dimension of Attr(shape) can be unknown.");
}
}
int64_t capacity =
std::accumulate(shape.begin(), shape.end(), 1, std::multiplies<int>());
int64_t in_size = framework::product(x_dims);
if (neg_dims_idx.size() == 1) {
// dim infer
shape[neg_dims_idx[0]] = in_size / (-capacity);
// recalculate capacity
capacity = shape[neg_dims_idx[0]] * (-capacity);
}
// capacity check
PADDLE_ENFORCE(capacity == in_size,
"The size of Input(X) mismatches with Attr(shape).");
// resize output
std::vector<int64_t> shape_int64(shape.size(), 0);
std::transform(shape.begin(), shape.end(), shape_int64.begin(),
[](int a) { return static_cast<int64_t>(a); });
auto out_dims = framework::make_ddim(shape_int64);
ctx->SetOutputDim("Out", out_dims);
if (shape[0] == x_dims[0]) {
// Only pass LoD when the first dimension is equal between
// output and input.
ctx->ShareLoD("X", /*->*/ "Out");
}
}
};
class ReshapeOpMaker : public framework::OpProtoAndCheckerMaker {
public:
ReshapeOpMaker(OpProto *proto, OpAttrChecker *op_checker)
: OpProtoAndCheckerMaker(proto, op_checker) {
AddInput("X", "The input tensor of reshape operator.");
AddOutput("Out", "The output tensor of reshape operator.");
AddAttr<std::vector<int>>("shape",
"(vector<int>) "
"Target shape of reshape operator.");
AddInput("X", "(Tensor). The input tensor of reshape operator.");
AddInput("Shape",
"(Tensor<int32>, optional). If provided, reshape according to "
"this given shape. That is to say it has a higher priority than "
"the shape attribute, while the shape attribute still should be "
"set correctly to gurantee shape inference in compile time.")
.AsDispensable();
AddOutput("Out", "(Tensor). The output tensor of reshape operator.");
AddAttr<std::vector<int>>(
"shape", "(std::vector<int>) Target shape of reshape operator.");
AddAttr<bool>("inplace",
"Change the source tensor's shape without copy memory.")
.SetDefault(true);
"(default: false) Change the source tensor's shape without "
"memory copy. When Attr(inplace) is set true, the output "
"tensor shares memory with Input(X), otherwise, a new output "
"tensor is created, and its data are copied from Input(x).")
.SetDefault(false);
AddComment(R"DOC(
Reshape Operator.
Reshape Input(X) into the shape specified by Attr(shape).
Reshape Input(X) into the shape specified by Attr(shape) or Input(Shape). The
data in Input(X) are unchanged.
Examples:
An example:
Given a 2-D tensor X with 2 rows and 2 columns : [[1, 2], [3, 4]]
1. Given a 3-D tensor Input(X) with a shape [2, 4, 6], and the target shape
specified by Attr(shape) is [6, 8], the reshape operator will transform Input(X)
into a 2-D tensor with shape [6, 8] and leaving Input(X)'s data unchanged.
and target shape = [1, 4], the reshape operator will transform
the tensor X into a 2-D tensor: [[1, 2, 3, 4]]
2. Given a 3-D tensor Input(X) with a shape [2, 4, 6], and the target shape
specified by Attr(shape) is [2, 3, -1, 2], the reshape operator will transform
Input(X) into a 4-D tensor with shape [2, 3, 4, 2] and leaving Input(X)'s data
unchanged. In this case, one and only dimension of Attr(shape) can be set to -1,
the value of this dimension is inferred from the total element number of
Input(X) and remaining dimensions.
3. Given a 3-D tensor Input(X) with a shape [2, 4, 6], and the target shape
specified by Attr(shape) is [-1, 0, 3, 2], the reshape operator will transform
Input(X) into a 4-D tensor with shape [2, 4, 3, 2] and leaving Input(X)'s data
unchanged. In this case, besides -1, 0 means the actual dimension value is going
to be copied from the corresponding dimension of Input(X).
Note:
1. One and only one dimension in Attr(shape) can be set -1. In this case,
the actual dimension value will be infered from the total element number of
Input(X) and remaining dimensions.
2. More than one dimensions in Attr(shape) can be set to 0, which means the real
dimension value will be copied from Input(X) at runtime. Note that the index of
0 can not exceed Rank(X). For example, Input(X) is a 3-D tensor with shape
[2, 3, 4], Attr(shape) = [2, 3, 2, 0] is an invalid input.
3. Input(Shape) has a higher priority than Attr(shape) if it is provided, while
Attr(shape) still should be set correctly to gurantee shape inference in
compile-time.
One dimension in the target shape can be set -1, representing that its
size is unknown. In this case, the real dimension will be infered from
the original shape of Input(X) and other dimensions in the target shape.
)DOC");
}
};
......@@ -119,6 +95,14 @@ class ReshapeGradOp : public framework::OperatorWithKernel {
"Input(Out@GRAD) shouldn't be null.");
ctx->SetOutputDim(framework::GradVarName("X"), ctx->GetInputDim("X"));
}
protected:
framework::OpKernelType GetExpectedKernelType(
const framework::ExecutionContext &ctx) const override {
return framework::OpKernelType(
framework::ToDataType(ctx.Input<framework::LoDTensor>("X")->type()),
ctx.device_context());
}
};
} // namespace operators
......
......@@ -20,17 +20,129 @@ limitations under the License. */
namespace paddle {
namespace operators {
class ReshapeOp : public framework::OperatorWithKernel {
public:
ReshapeOp(const std::string &type, const framework::VariableNameMap &inputs,
const framework::VariableNameMap &outputs,
const framework::AttributeMap &attrs)
: OperatorWithKernel(type, inputs, outputs, attrs) {}
void InferShape(framework::InferShapeContext *ctx) const override {
PADDLE_ENFORCE(ctx->HasInput("X"),
"Input(X) of ReshapeOp should not be null.");
PADDLE_ENFORCE(ctx->HasOutput("Out"),
"Output(Out) of ReshapeOp should not be null.");
const std::vector<int> &shape = ctx->Attrs().Get<std::vector<int>>("shape");
PADDLE_ENFORCE(!shape.empty(),
"The shape information must be set by Attr(shape).");
if (ctx->HasInput("Shape") && ctx->IsRuntime()) {
// If true, set the shape of Output(Out) according to Input(Shape) in
// ReshapeKernel with ExecutionContext. Also check LoD in ReshapeKernel.
ctx->ShareLoD("X", /*->*/ "Out");
return;
}
auto x_dims = ctx->GetInputDim("X");
auto out_dims = ValidateShape(shape, x_dims);
ctx->SetOutputDim("Out", out_dims);
if (x_dims[0] == out_dims[0]) {
// Only pass LoD when the first dimension of output and Input(X)
// are the same.
ctx->ShareLoD("X", /*->*/ "Out");
}
}
static framework::DDim ValidateShape(const std::vector<int> shape,
const framework::DDim &in_dims) {
const int64_t in_size = framework::product(in_dims);
// only one dimension canbe set to -1, whose size will be automatically
// infered.
const int64_t unk_dim_val = -1;
const int64_t copy_dim_val = 0;
std::vector<int64_t> output_shape(shape.size(), 0);
int64_t capacity = 1;
int unk_dim_idx = -1;
for (size_t i = 0; i < shape.size(); ++i) {
if (shape[i] == unk_dim_val) {
PADDLE_ENFORCE(
unk_dim_idx == -1,
"Only one input dimension of Attr(shape) can be unknown.");
unk_dim_idx = i;
} else if (shape[i] == copy_dim_val) {
PADDLE_ENFORCE(
static_cast<int>(i) < in_dims.size(),
"The index of dimension to copy from input shape must be less "
"than the size of input shape.");
} else {
PADDLE_ENFORCE(
shape[i] > 0,
"Each input dimension of Attr(shape) must not be negtive except "
"one unknown dimension.");
}
capacity *= (shape[i] ? shape[i] : in_dims[i]);
output_shape[i] =
(shape[i] ? static_cast<int64_t>(shape[i]) : in_dims[i]);
}
if (unk_dim_idx != -1) {
output_shape[unk_dim_idx] = -in_size / capacity;
PADDLE_ENFORCE_EQ(output_shape[unk_dim_idx] * capacity, -in_size,
"Invalid shape is given.");
} else {
PADDLE_ENFORCE_EQ(capacity, in_size, "Invalid shape is given.");
}
return framework::make_ddim(output_shape);
}
protected:
framework::OpKernelType GetExpectedKernelType(
const framework::ExecutionContext &ctx) const override {
return framework::OpKernelType(
framework::ToDataType(ctx.Input<framework::LoDTensor>("X")->type()),
ctx.device_context());
}
};
template <typename DeviceContext, typename T>
class ReshapeKernel : public framework::OpKernel<T> {
public:
void Compute(const framework::ExecutionContext& ctx) const {
auto* out = ctx.Output<framework::Tensor>("Out");
auto* in = ctx.Input<framework::Tensor>("X");
void Compute(const framework::ExecutionContext &ctx) const {
auto *out = ctx.Output<framework::LoDTensor>("Out");
auto *in = ctx.Input<framework::LoDTensor>("X");
auto *shape_tensor = ctx.Input<framework::LoDTensor>("Shape");
framework::DDim out_dims = out->dims();
if (shape_tensor) {
auto *shape_data = shape_tensor->data<int>();
if (platform::is_gpu_place(ctx.GetPlace())) {
framework::Tensor cpu_shape_tensor;
TensorCopy(*shape_tensor, platform::CPUPlace(), ctx.device_context(),
&cpu_shape_tensor);
shape_data = cpu_shape_tensor.data<int>();
}
auto shape =
std::vector<int>(shape_data, shape_data + shape_tensor->numel());
out_dims = ReshapeOp::ValidateShape(shape, in->dims());
}
if (!in->lod().empty()) {
PADDLE_ENFORCE_EQ(
out_dims[0], in->dims()[0],
"Reshape operator cannot reshape an input sequence batch "
"into an output sequence batch that has a different "
"number of time steps. Please consider using "
"sequence_reshape op.");
}
bool inplace = ctx.Attr<bool>("inplace");
auto out_dims = out->dims();
out->Resize(out_dims);
if (!inplace) {
out->mutable_data<T>(ctx.GetPlace());
framework::TensorCopy(*in, ctx.GetPlace(), ctx.device_context(), out);
// TensorCopy will resize to in_dims.
out->Resize(out_dims);
} else {
out->ShareDataWith(*in);
......@@ -42,9 +154,10 @@ class ReshapeKernel : public framework::OpKernel<T> {
template <typename DeviceContext, typename T>
class ReshapeGradKernel : public framework::OpKernel<T> {
public:
void Compute(const framework::ExecutionContext& ctx) const {
auto* d_out = ctx.Input<framework::Tensor>(framework::GradVarName("Out"));
auto* d_x = ctx.Output<framework::Tensor>(framework::GradVarName("X"));
void Compute(const framework::ExecutionContext &ctx) const {
auto *d_out = ctx.Input<framework::Tensor>(framework::GradVarName("Out"));
auto *d_x = ctx.Output<framework::Tensor>(framework::GradVarName("X"));
d_x->mutable_data<T>(ctx.GetPlace());
bool inplace = ctx.Attr<bool>("inplace");
......
......@@ -122,7 +122,8 @@ void StartServerNet(bool is_sparse) {
// sub program run in listen_and_serv_op, for simple test we use sum
f::ProgramDesc program;
f::BlockDesc *optimize_block = program.MutableBlock(0);
const auto &root_block = program.Block(0);
auto *optimize_block = program.AppendBlock(root_block);
// X for server side tensors, RX for received tensers, must be of same shape.
AddOp("sum", {{"X", {"x0", "x1"}}}, {{"Out", {"Out"}}}, {}, optimize_block);
......
......@@ -13,7 +13,9 @@ See the License for the specific language governing permissions and
limitations under the License. */
#include "paddle/fluid/platform/profiler.h"
#ifdef PADDLE_WITH_CUDA
#include "cuda_runtime.h"
#endif
#include "gtest/gtest.h"
TEST(Event, CpuElapsedTime) {
......@@ -159,6 +161,7 @@ TEST(RecordEvent, RecordEvent) {
DisableProfiler(EventSortingKey::kTotal, "/tmp/profiler");
}
#ifdef PADDLE_WITH_CUDA
TEST(TMP, stream_wait) {
cudaStream_t stream;
cudaStreamCreate(&stream);
......@@ -166,3 +169,4 @@ TEST(TMP, stream_wait) {
cudaStreamSynchronize(stream);
cudaStreamSynchronize(stream);
}
#endif
......@@ -125,9 +125,8 @@ EOF
-DWITH_AVX=${WITH_AVX:-ON} \
-DWITH_SWIG_PY=ON \
-DWITH_STYLE_CHECK=OFF
make -j `nproc` gen_proto_py framework_py_proto
make -j `nproc` copy_paddle_pybind
make -j `nproc` paddle_docs paddle_docs_cn paddle_api_docs
make -j `nproc` paddle_docs paddle_apis
popd
fi
......
......@@ -7,9 +7,8 @@ cd $TRAVIS_BUILD_DIR/build
# Compile Documentation only.
cmake .. -DCMAKE_BUILD_TYPE=Release -DWITH_GPU=OFF -DWITH_MKL=OFF -DWITH_DOC=ON -DWITH_STYLE_CHECK=OFF
make -j `nproc` gen_proto_py framework_py_proto
make -j `nproc` copy_paddle_pybind
make -j `nproc` paddle_docs paddle_docs_cn paddle_api_docs
make -j `nproc` paddle_docs paddle_apis
# check websites for broken links
linkchecker doc/v2/en/html/index.html
......
......@@ -73,13 +73,15 @@ add_custom_target(paddle_python ALL DEPENDS ${paddle_python_deps})
set(PADDLE_PYTHON_PACKAGE_DIR ${CMAKE_CURRENT_BINARY_DIR}/dist/)
if (WITH_TESTING)
add_subdirectory(paddle/reader/tests)
add_subdirectory(paddle/dataset/tests)
if(NOT WITH_FLUID_ONLY)
add_subdirectory(paddle/trainer_config_helpers/tests)
if (WITH_SWIG_PY)
# enable v2 API unittest only when paddle swig api is compiled
add_subdirectory(paddle/v2/tests)
add_subdirectory(paddle/v2/reader/tests)
add_subdirectory(paddle/v2/plot/tests)
add_subdirectory(paddle/v2/reader/tests)
endif()
endif()
add_subdirectory(paddle/fluid/tests)
......
......@@ -14,8 +14,14 @@
try:
from version import full_version as __version__
from version import commit as __git_commit__
except ImportError:
import sys
sys.stderr.write('''Warning with import paddle: you should not
import paddle from the source directory; please install paddlepaddle*.whl firstly.'''
)
import reader
import dataset
import batch
batch = batch.batch
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
__all__ = ['batch']
def batch(reader, batch_size):
"""
Create a batched reader.
:param reader: the data reader to read from.
:type reader: callable
:param batch_size: size of each mini-batch
:type batch_size: int
:return: the batched reader.
:rtype: callable
"""
def batch_reader():
r = reader()
b = []
for instance in r:
b.append(instance)
if len(b) == batch_size:
yield b
b = []
if b:
yield b
return batch_reader
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Dataset package.
"""
import mnist
import imikolov
import imdb
import cifar
import movielens
import conll05
import uci_housing
import sentiment
import wmt14
import wmt16
import mq2007
import flowers
import voc2012
import image
__all__ = [
'mnist',
'imikolov',
'imdb',
'cifar',
'movielens',
'conll05',
'sentiment',
'uci_housing',
'wmt14',
'wmt16',
'mq2007',
'flowers',
'voc2012',
'image',
]
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
CIFAR dataset.
This module will download dataset from
https://www.cs.toronto.edu/~kriz/cifar.html and parse train/test set into
paddle reader creators.
The CIFAR-10 dataset consists of 60000 32x32 colour images in 10 classes,
with 6000 images per class. There are 50000 training images and 10000 test
images.
The CIFAR-100 dataset is just like the CIFAR-10, except it has 100 classes
containing 600 images each. There are 500 training images and 100 testing
images per class.
"""
import cPickle
import itertools
import numpy
import paddle.dataset.common
import tarfile
__all__ = ['train100', 'test100', 'train10', 'test10', 'convert']
URL_PREFIX = 'https://www.cs.toronto.edu/~kriz/'
CIFAR10_URL = URL_PREFIX + 'cifar-10-python.tar.gz'
CIFAR10_MD5 = 'c58f30108f718f92721af3b95e74349a'
CIFAR100_URL = URL_PREFIX + 'cifar-100-python.tar.gz'
CIFAR100_MD5 = 'eb9058c3a382ffc7106e4002c42a8d85'
def reader_creator(filename, sub_name):
def read_batch(batch):
data = batch['data']
labels = batch.get('labels', batch.get('fine_labels', None))
assert labels is not None
for sample, label in itertools.izip(data, labels):
yield (sample / 255.0).astype(numpy.float32), int(label)
def reader():
with tarfile.open(filename, mode='r') as f:
names = (each_item.name for each_item in f
if sub_name in each_item.name)
for name in names:
batch = cPickle.load(f.extractfile(name))
for item in read_batch(batch):
yield item
return reader
def train100():
"""
CIFAR-100 training set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 99].
:return: Training reader creator
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(CIFAR100_URL, 'cifar', CIFAR100_MD5),
'train')
def test100():
"""
CIFAR-100 test set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 9].
:return: Test reader creator.
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(CIFAR100_URL, 'cifar', CIFAR100_MD5),
'test')
def train10():
"""
CIFAR-10 training set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 9].
:return: Training reader creator
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(CIFAR10_URL, 'cifar', CIFAR10_MD5),
'data_batch')
def test10():
"""
CIFAR-10 test set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 9].
:return: Test reader creator.
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(CIFAR10_URL, 'cifar', CIFAR10_MD5),
'test_batch')
def fetch():
paddle.dataset.common.download(CIFAR10_URL, 'cifar', CIFAR10_MD5)
paddle.dataset.common.download(CIFAR100_URL, 'cifar', CIFAR100_MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, train100(), 1000, "cifar_train100")
paddle.dataset.common.convert(path, test100(), 1000, "cifar_test100")
paddle.dataset.common.convert(path, train10(), 1000, "cifar_train10")
paddle.dataset.common.convert(path, test10(), 1000, "cifar_test10")
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import requests
import hashlib
import os
import errno
import shutil
import sys
import importlib
import paddle.dataset
import cPickle
import glob
import cPickle as pickle
__all__ = [
'DATA_HOME',
'download',
'md5file',
'split',
'cluster_files_reader',
'convert',
]
DATA_HOME = os.path.expanduser('~/.cache/paddle/dataset')
# When running unit tests, there could be multiple processes that
# trying to create DATA_HOME directory simultaneously, so we cannot
# use a if condition to check for the existence of the directory;
# instead, we use the filesystem as the synchronization mechanism by
# catching returned errors.
def must_mkdirs(path):
try:
os.makedirs(DATA_HOME)
except OSError as exc:
if exc.errno != errno.EEXIST:
raise
pass
must_mkdirs(DATA_HOME)
def md5file(fname):
hash_md5 = hashlib.md5()
f = open(fname, "rb")
for chunk in iter(lambda: f.read(4096), b""):
hash_md5.update(chunk)
f.close()
return hash_md5.hexdigest()
def download(url, module_name, md5sum, save_name=None):
dirname = os.path.join(DATA_HOME, module_name)
if not os.path.exists(dirname):
os.makedirs(dirname)
filename = os.path.join(dirname,
url.split('/')[-1]
if save_name is None else save_name)
retry = 0
retry_limit = 3
while not (os.path.exists(filename) and md5file(filename) == md5sum):
if os.path.exists(filename):
print "file md5", md5file(filename), md5sum
if retry < retry_limit:
retry += 1
else:
raise RuntimeError("Cannot download {0} within retry limit {1}".
format(url, retry_limit))
print "Cache file %s not found, downloading %s" % (filename, url)
r = requests.get(url, stream=True)
total_length = r.headers.get('content-length')
if total_length is None:
with open(filename, 'w') as f:
shutil.copyfileobj(r.raw, f)
else:
with open(filename, 'w') as f:
dl = 0
total_length = int(total_length)
for data in r.iter_content(chunk_size=4096):
dl += len(data)
f.write(data)
done = int(50 * dl / total_length)
sys.stdout.write("\r[%s%s]" % ('=' * done,
' ' * (50 - done)))
sys.stdout.flush()
return filename
def fetch_all():
for module_name in filter(lambda x: not x.startswith("__"),
dir(paddle.dataset)):
if "fetch" in dir(
importlib.import_module("paddle.dataset.%s" % module_name)):
getattr(
importlib.import_module("paddle.dataset.%s" % module_name),
"fetch")()
def fetch_all_recordio(path):
for module_name in filter(lambda x: not x.startswith("__"),
dir(paddle.dataset)):
if "convert" in dir(
importlib.import_module("paddle.dataset.%s" % module_name)) and \
not module_name == "common":
ds_path = os.path.join(path, module_name)
must_mkdirs(ds_path)
getattr(
importlib.import_module("paddle.dataset.%s" % module_name),
"convert")(ds_path)
def split(reader, line_count, suffix="%05d.pickle", dumper=cPickle.dump):
"""
you can call the function as:
split(paddle.dataset.cifar.train10(), line_count=1000,
suffix="imikolov-train-%05d.pickle")
the output files as:
|-imikolov-train-00000.pickle
|-imikolov-train-00001.pickle
|- ...
|-imikolov-train-00480.pickle
:param reader: is a reader creator
:param line_count: line count for each file
:param suffix: the suffix for the output files, should contain "%d"
means the id for each file. Default is "%05d.pickle"
:param dumper: is a callable function that dump object to file, this
function will be called as dumper(obj, f) and obj is the object
will be dumped, f is a file object. Default is cPickle.dump.
"""
if not callable(dumper):
raise TypeError("dumper should be callable.")
lines = []
indx_f = 0
for i, d in enumerate(reader()):
lines.append(d)
if i >= line_count and i % line_count == 0:
with open(suffix % indx_f, "w") as f:
dumper(lines, f)
lines = []
indx_f += 1
if lines:
with open(suffix % indx_f, "w") as f:
dumper(lines, f)
def cluster_files_reader(files_pattern,
trainer_count,
trainer_id,
loader=cPickle.load):
"""
Create a reader that yield element from the given files, select
a file set according trainer count and trainer_id
:param files_pattern: the files which generating by split(...)
:param trainer_count: total trainer count
:param trainer_id: the trainer rank id
:param loader: is a callable function that load object from file, this
function will be called as loader(f) and f is a file object.
Default is cPickle.load
"""
def reader():
if not callable(loader):
raise TypeError("loader should be callable.")
file_list = glob.glob(files_pattern)
file_list.sort()
my_file_list = []
for idx, fn in enumerate(file_list):
if idx % trainer_count == trainer_id:
print "append file: %s" % fn
my_file_list.append(fn)
for fn in my_file_list:
with open(fn, "r") as f:
lines = loader(f)
for line in lines:
yield line
return reader
def convert(output_path, reader, line_count, name_prefix):
import recordio
"""
Convert data from reader to recordio format files.
:param output_path: directory in which output files will be saved.
:param reader: a data reader, from which the convert program will read
data instances.
:param name_prefix: the name prefix of generated files.
:param max_lines_to_shuffle: the max lines numbers to shuffle before
writing.
"""
assert line_count >= 1
indx_f = 0
def write_data(indx_f, lines):
filename = "%s/%s-%05d" % (output_path, name_prefix, indx_f)
writer = recordio.writer(filename)
for l in lines:
# FIXME(Yancey1989):
# dumps with protocol: pickle.HIGHEST_PROTOCOL
writer.write(cPickle.dumps(l))
writer.close()
lines = []
for i, d in enumerate(reader()):
lines.append(d)
if i % line_count == 0 and i >= line_count:
write_data(indx_f, lines)
lines = []
indx_f += 1
continue
write_data(indx_f, lines)
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Conll05 dataset.
Paddle semantic role labeling Book and demo use this dataset as an example.
Because Conll05 is not free in public, the default downloaded URL is test set
of Conll05 (which is public). Users can change URL and MD5 to their Conll
dataset. And a pre-trained word vector model based on Wikipedia corpus is used
to initialize SRL model.
"""
import tarfile
import gzip
import itertools
import paddle.dataset.common
__all__ = ['test, get_dict', 'get_embedding', 'convert']
DATA_URL = 'http://www.cs.upc.edu/~srlconll/conll05st-tests.tar.gz'
DATA_MD5 = '387719152ae52d60422c016e92a742fc'
WORDDICT_URL = 'http://paddlepaddle.bj.bcebos.com/demo/srl_dict_and_embedding/wordDict.txt'
WORDDICT_MD5 = 'ea7fb7d4c75cc6254716f0177a506baa'
VERBDICT_URL = 'http://paddlepaddle.bj.bcebos.com/demo/srl_dict_and_embedding/verbDict.txt'
VERBDICT_MD5 = '0d2977293bbb6cbefab5b0f97db1e77c'
TRGDICT_URL = 'http://paddlepaddle.bj.bcebos.com/demo/srl_dict_and_embedding/targetDict.txt'
TRGDICT_MD5 = 'd8c7f03ceb5fc2e5a0fa7503a4353751'
EMB_URL = 'http://paddlepaddle.bj.bcebos.com/demo/srl_dict_and_embedding/emb'
EMB_MD5 = 'bf436eb0faa1f6f9103017f8be57cdb7'
UNK_IDX = 0
def load_label_dict(filename):
d = dict()
tag_dict = set()
with open(filename, 'r') as f:
for i, line in enumerate(f):
line = line.strip()
if line.startswith("B-"):
tag_dict.add(line[2:])
elif line.startswith("I-"):
tag_dict.add(line[2:])
index = 0
for tag in tag_dict:
d["B-" + tag] = index
index += 1
d["I-" + tag] = index
index += 1
d["O"] = index
return d
def load_dict(filename):
d = dict()
with open(filename, 'r') as f:
for i, line in enumerate(f):
d[line.strip()] = i
return d
def corpus_reader(data_path, words_name, props_name):
"""
Read one corpus. It returns an iterator. Each element of
this iterator is a tuple including sentence and labels. The sentence is
consist of a list of word IDs. The labels include a list of label IDs.
:return: a iterator of data.
:rtype: iterator
"""
def reader():
tf = tarfile.open(data_path)
wf = tf.extractfile(words_name)
pf = tf.extractfile(props_name)
with gzip.GzipFile(fileobj=wf) as words_file, gzip.GzipFile(
fileobj=pf) as props_file:
sentences = []
labels = []
one_seg = []
for word, label in itertools.izip(words_file, props_file):
word = word.strip()
label = label.strip().split()
if len(label) == 0: # end of sentence
for i in xrange(len(one_seg[0])):
a_kind_lable = [x[i] for x in one_seg]
labels.append(a_kind_lable)
if len(labels) >= 1:
verb_list = []
for x in labels[0]:
if x != '-':
verb_list.append(x)
for i, lbl in enumerate(labels[1:]):
cur_tag = 'O'
is_in_bracket = False
lbl_seq = []
verb_word = ''
for l in lbl:
if l == '*' and is_in_bracket == False:
lbl_seq.append('O')
elif l == '*' and is_in_bracket == True:
lbl_seq.append('I-' + cur_tag)
elif l == '*)':
lbl_seq.append('I-' + cur_tag)
is_in_bracket = False
elif l.find('(') != -1 and l.find(')') != -1:
cur_tag = l[1:l.find('*')]
lbl_seq.append('B-' + cur_tag)
is_in_bracket = False
elif l.find('(') != -1 and l.find(')') == -1:
cur_tag = l[1:l.find('*')]
lbl_seq.append('B-' + cur_tag)
is_in_bracket = True
else:
raise RuntimeError('Unexpected label: %s' %
l)
yield sentences, verb_list[i], lbl_seq
sentences = []
labels = []
one_seg = []
else:
sentences.append(word)
one_seg.append(label)
pf.close()
wf.close()
tf.close()
return reader
def reader_creator(corpus_reader,
word_dict=None,
predicate_dict=None,
label_dict=None):
def reader():
for sentence, predicate, labels in corpus_reader():
sen_len = len(sentence)
verb_index = labels.index('B-V')
mark = [0] * len(labels)
if verb_index > 0:
mark[verb_index - 1] = 1
ctx_n1 = sentence[verb_index - 1]
else:
ctx_n1 = 'bos'
if verb_index > 1:
mark[verb_index - 2] = 1
ctx_n2 = sentence[verb_index - 2]
else:
ctx_n2 = 'bos'
mark[verb_index] = 1
ctx_0 = sentence[verb_index]
if verb_index < len(labels) - 1:
mark[verb_index + 1] = 1
ctx_p1 = sentence[verb_index + 1]
else:
ctx_p1 = 'eos'
if verb_index < len(labels) - 2:
mark[verb_index + 2] = 1
ctx_p2 = sentence[verb_index + 2]
else:
ctx_p2 = 'eos'
word_idx = [word_dict.get(w, UNK_IDX) for w in sentence]
ctx_n2_idx = [word_dict.get(ctx_n2, UNK_IDX)] * sen_len
ctx_n1_idx = [word_dict.get(ctx_n1, UNK_IDX)] * sen_len
ctx_0_idx = [word_dict.get(ctx_0, UNK_IDX)] * sen_len
ctx_p1_idx = [word_dict.get(ctx_p1, UNK_IDX)] * sen_len
ctx_p2_idx = [word_dict.get(ctx_p2, UNK_IDX)] * sen_len
pred_idx = [predicate_dict.get(predicate)] * sen_len
label_idx = [label_dict.get(w) for w in labels]
yield word_idx, ctx_n2_idx, ctx_n1_idx, \
ctx_0_idx, ctx_p1_idx, ctx_p2_idx, pred_idx, mark, label_idx
return reader
def get_dict():
"""
Get the word, verb and label dictionary of Wikipedia corpus.
"""
word_dict = load_dict(
paddle.dataset.common.download(WORDDICT_URL, 'conll05st', WORDDICT_MD5))
verb_dict = load_dict(
paddle.dataset.common.download(VERBDICT_URL, 'conll05st', VERBDICT_MD5))
label_dict = load_label_dict(
paddle.dataset.common.download(TRGDICT_URL, 'conll05st', TRGDICT_MD5))
return word_dict, verb_dict, label_dict
def get_embedding():
"""
Get the trained word vector based on Wikipedia corpus.
"""
return paddle.dataset.common.download(EMB_URL, 'conll05st', EMB_MD5)
def test():
"""
Conll05 test set creator.
Because the training dataset is not free, the test dataset is used for
training. It returns a reader creator, each sample in the reader is nine
features, including sentence sequence, predicate, predicate context,
predicate context flag and tagged sequence.
:return: Training reader creator
:rtype: callable
"""
word_dict, verb_dict, label_dict = get_dict()
reader = corpus_reader(
paddle.dataset.common.download(DATA_URL, 'conll05st', DATA_MD5),
words_name='conll05st-release/test.wsj/words/test.wsj.words.gz',
props_name='conll05st-release/test.wsj/props/test.wsj.props.gz')
return reader_creator(reader, word_dict, verb_dict, label_dict)
def fetch():
paddle.dataset.common.download(WORDDICT_URL, 'conll05st', WORDDICT_MD5)
paddle.dataset.common.download(VERBDICT_URL, 'conll05st', VERBDICT_MD5)
paddle.dataset.common.download(TRGDICT_URL, 'conll05st', TRGDICT_MD5)
paddle.dataset.common.download(EMB_URL, 'conll05st', EMB_MD5)
paddle.dataset.common.download(DATA_URL, 'conll05st', DATA_MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, test(), 1000, "conl105_train")
paddle.dataset.common.convert(path, test(), 1000, "conl105_test")
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This module will download dataset from
http://www.robots.ox.ac.uk/~vgg/data/flowers/102/index.html
and parse train/test set intopaddle reader creators.
This set contains images of flowers belonging to 102 different categories.
The images were acquired by searching the web and taking pictures. There are a
minimum of 40 images for each category.
The database was used in:
Nilsback, M-E. and Zisserman, A. Automated flower classification over a large
number of classes.Proceedings of the Indian Conference on Computer Vision,
Graphics and Image Processing (2008)
http://www.robots.ox.ac.uk/~vgg/publications/papers/nilsback08.{pdf,ps.gz}.
"""
import cPickle
import itertools
import functools
from common import download
import tarfile
import scipy.io as scio
from paddle.dataset.image import *
from paddle.reader import *
import os
import numpy as np
from multiprocessing import cpu_count
__all__ = ['train', 'test', 'valid']
DATA_URL = 'http://www.robots.ox.ac.uk/~vgg/data/flowers/102/102flowers.tgz'
LABEL_URL = 'http://www.robots.ox.ac.uk/~vgg/data/flowers/102/imagelabels.mat'
SETID_URL = 'http://www.robots.ox.ac.uk/~vgg/data/flowers/102/setid.mat'
DATA_MD5 = '33bfc11892f1e405ca193ae9a9f2a118'
LABEL_MD5 = 'e0620be6f572b9609742df49c70aed4d'
SETID_MD5 = 'a5357ecc9cb78c4bef273ce3793fc85c'
# In official 'readme', tstid is the flag of test data
# and trnid is the flag of train data. But test data is more than train data.
# So we exchange the train data and test data.
TRAIN_FLAG = 'tstid'
TEST_FLAG = 'trnid'
VALID_FLAG = 'valid'
def default_mapper(is_train, sample):
'''
map image bytes data to type needed by model input layer
'''
img, label = sample
img = load_image_bytes(img)
img = simple_transform(
img, 256, 224, is_train, mean=[103.94, 116.78, 123.68])
return img.flatten().astype('float32'), label
train_mapper = functools.partial(default_mapper, True)
test_mapper = functools.partial(default_mapper, False)
def reader_creator(data_file,
label_file,
setid_file,
dataset_name,
mapper,
buffered_size=1024,
use_xmap=True):
'''
1. read images from tar file and
merge images into batch files in 102flowers.tgz_batch/
2. get a reader to read sample from batch file
:param data_file: downloaded data file
:type data_file: string
:param label_file: downloaded label file
:type label_file: string
:param setid_file: downloaded setid file containing information
about how to split dataset
:type setid_file: string
:param dataset_name: data set name (tstid|trnid|valid)
:type dataset_name: string
:param mapper: a function to map image bytes data to type
needed by model input layer
:type mapper: callable
:param buffered_size: the size of buffer used to process images
:type buffered_size: int
:return: data reader
:rtype: callable
'''
labels = scio.loadmat(label_file)['labels'][0]
indexes = scio.loadmat(setid_file)[dataset_name][0]
img2label = {}
for i in indexes:
img = "jpg/image_%05d.jpg" % i
img2label[img] = labels[i - 1]
file_list = batch_images_from_tar(data_file, dataset_name, img2label)
def reader():
for file in open(file_list):
file = file.strip()
batch = None
with open(file, 'r') as f:
batch = cPickle.load(f)
data = batch['data']
labels = batch['label']
for sample, label in itertools.izip(data, batch['label']):
yield sample, int(label) - 1
if use_xmap:
return xmap_readers(mapper, reader, cpu_count(), buffered_size)
else:
return map_readers(mapper, reader)
def train(mapper=train_mapper, buffered_size=1024, use_xmap=True):
'''
Create flowers training set reader.
It returns a reader, each sample in the reader is
image pixels in [0, 1] and label in [1, 102]
translated from original color image by steps:
1. resize to 256*256
2. random crop to 224*224
3. flatten
:param mapper: a function to map sample.
:type mapper: callable
:param buffered_size: the size of buffer used to process images
:type buffered_size: int
:return: train data reader
:rtype: callable
'''
return reader_creator(
download(DATA_URL, 'flowers', DATA_MD5),
download(LABEL_URL, 'flowers', LABEL_MD5),
download(SETID_URL, 'flowers', SETID_MD5), TRAIN_FLAG, mapper,
buffered_size, use_xmap)
def test(mapper=test_mapper, buffered_size=1024, use_xmap=True):
'''
Create flowers test set reader.
It returns a reader, each sample in the reader is
image pixels in [0, 1] and label in [1, 102]
translated from original color image by steps:
1. resize to 256*256
2. random crop to 224*224
3. flatten
:param mapper: a function to map sample.
:type mapper: callable
:param buffered_size: the size of buffer used to process images
:type buffered_size: int
:return: test data reader
:rtype: callable
'''
return reader_creator(
download(DATA_URL, 'flowers', DATA_MD5),
download(LABEL_URL, 'flowers', LABEL_MD5),
download(SETID_URL, 'flowers', SETID_MD5), TEST_FLAG, mapper,
buffered_size, use_xmap)
def valid(mapper=test_mapper, buffered_size=1024, use_xmap=True):
'''
Create flowers validation set reader.
It returns a reader, each sample in the reader is
image pixels in [0, 1] and label in [1, 102]
translated from original color image by steps:
1. resize to 256*256
2. random crop to 224*224
3. flatten
:param mapper: a function to map sample.
:type mapper: callable
:param buffered_size: the size of buffer used to process images
:type buffered_size: int
:return: test data reader
:rtype: callable
'''
return reader_creator(
download(DATA_URL, 'flowers', DATA_MD5),
download(LABEL_URL, 'flowers', LABEL_MD5),
download(SETID_URL, 'flowers', SETID_MD5), VALID_FLAG, mapper,
buffered_size, use_xmap)
def fetch():
download(DATA_URL, 'flowers', DATA_MD5)
download(LABEL_URL, 'flowers', LABEL_MD5)
download(SETID_URL, 'flowers', SETID_MD5)
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This file contains some common interfaces for image preprocess.
Many users are confused about the image layout. We introduce
the image layout as follows.
- CHW Layout
- The abbreviations: C=channel, H=Height, W=Width
- The default layout of image opened by cv2 or PIL is HWC.
PaddlePaddle only supports the CHW layout. And CHW is simply
a transpose of HWC. It must transpose the input image.
- Color format: RGB or BGR
OpenCV use BGR color format. PIL use RGB color format. Both
formats can be used for training. Noted that, the format should
be keep consistent between the training and inference peroid.
"""
import numpy as np
try:
import cv2
except ImportError:
cv2 = None
import os
import tarfile
import cPickle
__all__ = [
"load_image_bytes", "load_image", "resize_short", "to_chw", "center_crop",
"random_crop", "left_right_flip", "simple_transform", "load_and_transform",
"batch_images_from_tar"
]
def batch_images_from_tar(data_file,
dataset_name,
img2label,
num_per_batch=1024):
"""
Read images from tar file and batch them into batch file.
:param data_file: path of image tar file
:type data_file: string
:param dataset_name: 'train','test' or 'valid'
:type dataset_name: string
:param img2label: a dic with image file name as key
and image's label as value
:type img2label: dic
:param num_per_batch: image number per batch file
:type num_per_batch: int
:return: path of list file containing paths of batch file
:rtype: string
"""
batch_dir = data_file + "_batch"
out_path = "%s/%s" % (batch_dir, dataset_name)
meta_file = "%s/%s.txt" % (batch_dir, dataset_name)
if os.path.exists(out_path):
return meta_file
else:
os.makedirs(out_path)
tf = tarfile.open(data_file)
mems = tf.getmembers()
data = []
labels = []
file_id = 0
for mem in mems:
if mem.name in img2label:
data.append(tf.extractfile(mem).read())
labels.append(img2label[mem.name])
if len(data) == num_per_batch:
output = {}
output['label'] = labels
output['data'] = data
cPickle.dump(
output,
open('%s/batch_%d' % (out_path, file_id), 'w'),
protocol=cPickle.HIGHEST_PROTOCOL)
file_id += 1
data = []
labels = []
if len(data) > 0:
output = {}
output['label'] = labels
output['data'] = data
cPickle.dump(
output,
open('%s/batch_%d' % (out_path, file_id), 'w'),
protocol=cPickle.HIGHEST_PROTOCOL)
with open(meta_file, 'a') as meta:
for file in os.listdir(out_path):
meta.write(os.path.abspath("%s/%s" % (out_path, file)) + "\n")
return meta_file
def load_image_bytes(bytes, is_color=True):
"""
Load an color or gray image from bytes array.
Example usage:
.. code-block:: python
with open('cat.jpg') as f:
im = load_image_bytes(f.read())
:param bytes: the input image bytes array.
:type bytes: str
:param is_color: If set is_color True, it will load and
return a color image. Otherwise, it will
load and return a gray image.
:type is_color: bool
"""
flag = 1 if is_color else 0
file_bytes = np.asarray(bytearray(bytes), dtype=np.uint8)
img = cv2.imdecode(file_bytes, flag)
return img
def load_image(file, is_color=True):
"""
Load an color or gray image from the file path.
Example usage:
.. code-block:: python
im = load_image('cat.jpg')
:param file: the input image path.
:type file: string
:param is_color: If set is_color True, it will load and
return a color image. Otherwise, it will
load and return a gray image.
:type is_color: bool
"""
# cv2.IMAGE_COLOR for OpenCV3
# cv2.CV_LOAD_IMAGE_COLOR for older OpenCV Version
# cv2.IMAGE_GRAYSCALE for OpenCV3
# cv2.CV_LOAD_IMAGE_GRAYSCALE for older OpenCV Version
# Here, use constant 1 and 0
# 1: COLOR, 0: GRAYSCALE
flag = 1 if is_color else 0
im = cv2.imread(file, flag)
return im
def resize_short(im, size):
"""
Resize an image so that the length of shorter edge is size.
Example usage:
.. code-block:: python
im = load_image('cat.jpg')
im = resize_short(im, 256)
:param im: the input image with HWC layout.
:type im: ndarray
:param size: the shorter edge size of image after resizing.
:type size: int
"""
h, w = im.shape[:2]
h_new, w_new = size, size
if h > w:
h_new = size * h / w
else:
w_new = size * w / h
im = cv2.resize(im, (h_new, w_new), interpolation=cv2.INTER_CUBIC)
return im
def to_chw(im, order=(2, 0, 1)):
"""
Transpose the input image order. The image layout is HWC format
opened by cv2 or PIL. Transpose the input image to CHW layout
according the order (2,0,1).
Example usage:
.. code-block:: python
im = load_image('cat.jpg')
im = resize_short(im, 256)
im = to_chw(im)
:param im: the input image with HWC layout.
:type im: ndarray
:param order: the transposed order.
:type order: tuple|list
"""
assert len(im.shape) == len(order)
im = im.transpose(order)
return im
def center_crop(im, size, is_color=True):
"""
Crop the center of image with size.
Example usage:
.. code-block:: python
im = center_crop(im, 224)
:param im: the input image with HWC layout.
:type im: ndarray
:param size: the cropping size.
:type size: int
:param is_color: whether the image is color or not.
:type is_color: bool
"""
h, w = im.shape[:2]
h_start = (h - size) / 2
w_start = (w - size) / 2
h_end, w_end = h_start + size, w_start + size
if is_color:
im = im[h_start:h_end, w_start:w_end, :]
else:
im = im[h_start:h_end, w_start:w_end]
return im
def random_crop(im, size, is_color=True):
"""
Randomly crop input image with size.
Example usage:
.. code-block:: python
im = random_crop(im, 224)
:param im: the input image with HWC layout.
:type im: ndarray
:param size: the cropping size.
:type size: int
:param is_color: whether the image is color or not.
:type is_color: bool
"""
h, w = im.shape[:2]
h_start = np.random.randint(0, h - size + 1)
w_start = np.random.randint(0, w - size + 1)
h_end, w_end = h_start + size, w_start + size
if is_color:
im = im[h_start:h_end, w_start:w_end, :]
else:
im = im[h_start:h_end, w_start:w_end]
return im
def left_right_flip(im, is_color=True):
"""
Flip an image along the horizontal direction.
Return the flipped image.
Example usage:
.. code-block:: python
im = left_right_flip(im)
:param im: input image with HWC layout or HW layout for gray image
:type im: ndarray
:param is_color: whether input image is color or not
:type is_color: bool
"""
if len(im.shape) == 3 and is_color:
return im[:, ::-1, :]
else:
return im[:, ::-1]
def simple_transform(im,
resize_size,
crop_size,
is_train,
is_color=True,
mean=None):
"""
Simply data argumentation for training. These operations include
resizing, croping and flipping.
Example usage:
.. code-block:: python
im = simple_transform(im, 256, 224, True)
:param im: The input image with HWC layout.
:type im: ndarray
:param resize_size: The shorter edge length of the resized image.
:type resize_size: int
:param crop_size: The cropping size.
:type crop_size: int
:param is_train: Whether it is training or not.
:type is_train: bool
:param is_color: whether the image is color or not.
:type is_color: bool
:param mean: the mean values, which can be element-wise mean values or
mean values per channel.
:type mean: numpy array | list
"""
im = resize_short(im, resize_size)
if is_train:
im = random_crop(im, crop_size, is_color=is_color)
if np.random.randint(2) == 0:
im = left_right_flip(im, is_color)
else:
im = center_crop(im, crop_size, is_color)
im = center_crop(im, crop_size, is_color=is_color)
if len(im.shape) == 3:
im = to_chw(im)
im = im.astype('float32')
if mean is not None:
mean = np.array(mean, dtype=np.float32)
# mean value, may be one value per channel
if mean.ndim == 1 and is_color:
mean = mean[:, np.newaxis, np.newaxis]
elif mean.ndim == 1:
mean = mean
else:
# elementwise mean
assert len(mean.shape) == len(im)
im -= mean
return im
def load_and_transform(filename,
resize_size,
crop_size,
is_train,
is_color=True,
mean=None):
"""
Load image from the input file `filename` and transform image for
data argumentation. Please refer to the `simple_transform` interface
for the transform operations.
Example usage:
.. code-block:: python
im = load_and_transform('cat.jpg', 256, 224, True)
:param filename: The file name of input image.
:type filename: string
:param resize_size: The shorter edge length of the resized image.
:type resize_size: int
:param crop_size: The cropping size.
:type crop_size: int
:param is_train: Whether it is training or not.
:type is_train: bool
:param is_color: whether the image is color or not.
:type is_color: bool
:param mean: the mean values, which can be element-wise mean values or
mean values per channel.
:type mean: numpy array | list
"""
im = load_image(filename, is_color)
im = simple_transform(im, resize_size, crop_size, is_train, is_color, mean)
return im
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
IMDB dataset.
This module downloads IMDB dataset from
http://ai.stanford.edu/%7Eamaas/data/sentiment/. This dataset contains a set
of 25,000 highly polar movie reviews for training, and 25,000 for testing.
Besides, this module also provides API for building dictionary.
"""
import paddle.dataset.common
import collections
import tarfile
import re
import string
__all__ = ['build_dict', 'train', 'test', 'convert']
URL = 'http://ai.stanford.edu/%7Eamaas/data/sentiment/aclImdb_v1.tar.gz'
MD5 = '7c2ac02c03563afcf9b574c7e56c153a'
def tokenize(pattern):
"""
Read files that match the given pattern. Tokenize and yield each file.
"""
with tarfile.open(paddle.dataset.common.download(URL, 'imdb', MD5)) as tarf:
# Note that we should use tarfile.next(), which does
# sequential access of member files, other than
# tarfile.extractfile, which does random access and might
# destroy hard disks.
tf = tarf.next()
while tf != None:
if bool(pattern.match(tf.name)):
# newline and punctuations removal and ad-hoc tokenization.
yield tarf.extractfile(tf).read().rstrip("\n\r").translate(
None, string.punctuation).lower().split()
tf = tarf.next()
def build_dict(pattern, cutoff):
"""
Build a word dictionary from the corpus. Keys of the dictionary are words,
and values are zero-based IDs of these words.
"""
word_freq = collections.defaultdict(int)
for doc in tokenize(pattern):
for word in doc:
word_freq[word] += 1
# Not sure if we should prune less-frequent words here.
word_freq = filter(lambda x: x[1] > cutoff, word_freq.items())
dictionary = sorted(word_freq, key=lambda x: (-x[1], x[0]))
words, _ = list(zip(*dictionary))
word_idx = dict(zip(words, xrange(len(words))))
word_idx['<unk>'] = len(words)
return word_idx
def reader_creator(pos_pattern, neg_pattern, word_idx):
UNK = word_idx['<unk>']
INS = []
def load(pattern, out, label):
for doc in tokenize(pattern):
out.append(([word_idx.get(w, UNK) for w in doc], label))
load(pos_pattern, INS, 0)
load(neg_pattern, INS, 1)
def reader():
for doc, label in INS:
yield doc, label
return reader
def train(word_idx):
"""
IMDB training set creator.
It returns a reader creator, each sample in the reader is an zero-based ID
sequence and label in [0, 1].
:param word_idx: word dictionary
:type word_idx: dict
:return: Training reader creator
:rtype: callable
"""
return reader_creator(
re.compile("aclImdb/train/pos/.*\.txt$"),
re.compile("aclImdb/train/neg/.*\.txt$"), word_idx)
def test(word_idx):
"""
IMDB test set creator.
It returns a reader creator, each sample in the reader is an zero-based ID
sequence and label in [0, 1].
:param word_idx: word dictionary
:type word_idx: dict
:return: Test reader creator
:rtype: callable
"""
return reader_creator(
re.compile("aclImdb/test/pos/.*\.txt$"),
re.compile("aclImdb/test/neg/.*\.txt$"), word_idx)
def word_dict():
"""
Build a word dictionary from the corpus.
:return: Word dictionary
:rtype: dict
"""
return build_dict(
re.compile("aclImdb/((train)|(test))/((pos)|(neg))/.*\.txt$"), 150)
def fetch():
paddle.dataset.common.download(URL, 'imdb', MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
w = word_dict()
paddle.dataset.common.convert(path, lambda: train(w), 1000, "imdb_train")
paddle.dataset.common.convert(path, lambda: test(w), 1000, "imdb_test")
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
imikolov's simple dataset.
This module will download dataset from
http://www.fit.vutbr.cz/~imikolov/rnnlm/ and parse training set and test set
into paddle reader creators.
"""
import paddle.dataset.common
import collections
import tarfile
__all__ = ['train', 'test', 'build_dict', 'convert']
URL = 'http://www.fit.vutbr.cz/~imikolov/rnnlm/simple-examples.tgz'
MD5 = '30177ea32e27c525793142b6bf2c8e2d'
class DataType(object):
NGRAM = 1
SEQ = 2
def word_count(f, word_freq=None):
if word_freq is None:
word_freq = collections.defaultdict(int)
for l in f:
for w in l.strip().split():
word_freq[w] += 1
word_freq['<s>'] += 1
word_freq['<e>'] += 1
return word_freq
def build_dict(min_word_freq=50):
"""
Build a word dictionary from the corpus, Keys of the dictionary are words,
and values are zero-based IDs of these words.
"""
train_filename = './simple-examples/data/ptb.train.txt'
test_filename = './simple-examples/data/ptb.valid.txt'
with tarfile.open(
paddle.dataset.common.download(paddle.dataset.imikolov.URL,
'imikolov',
paddle.dataset.imikolov.MD5)) as tf:
trainf = tf.extractfile(train_filename)
testf = tf.extractfile(test_filename)
word_freq = word_count(testf, word_count(trainf))
if '<unk>' in word_freq:
# remove <unk> for now, since we will set it as last index
del word_freq['<unk>']
word_freq = filter(lambda x: x[1] > min_word_freq, word_freq.items())
word_freq_sorted = sorted(word_freq, key=lambda x: (-x[1], x[0]))
words, _ = list(zip(*word_freq_sorted))
word_idx = dict(zip(words, xrange(len(words))))
word_idx['<unk>'] = len(words)
return word_idx
def reader_creator(filename, word_idx, n, data_type):
def reader():
with tarfile.open(
paddle.dataset.common.download(
paddle.dataset.imikolov.URL, 'imikolov',
paddle.dataset.imikolov.MD5)) as tf:
f = tf.extractfile(filename)
UNK = word_idx['<unk>']
for l in f:
if DataType.NGRAM == data_type:
assert n > -1, 'Invalid gram length'
l = ['<s>'] + l.strip().split() + ['<e>']
if len(l) >= n:
l = [word_idx.get(w, UNK) for w in l]
for i in range(n, len(l) + 1):
yield tuple(l[i - n:i])
elif DataType.SEQ == data_type:
l = l.strip().split()
l = [word_idx.get(w, UNK) for w in l]
src_seq = [word_idx['<s>']] + l
trg_seq = l + [word_idx['<e>']]
if n > 0 and len(src_seq) > n: continue
yield src_seq, trg_seq
else:
assert False, 'Unknow data type'
return reader
def train(word_idx, n, data_type=DataType.NGRAM):
"""
imikolov training set creator.
It returns a reader creator, each sample in the reader is a word ID
tuple.
:param word_idx: word dictionary
:type word_idx: dict
:param n: sliding window size if type is ngram, otherwise max length of sequence
:type n: int
:param data_type: data type (ngram or sequence)
:type data_type: member variable of DataType (NGRAM or SEQ)
:return: Training reader creator
:rtype: callable
"""
return reader_creator('./simple-examples/data/ptb.train.txt', word_idx, n,
data_type)
def test(word_idx, n, data_type=DataType.NGRAM):
"""
imikolov test set creator.
It returns a reader creator, each sample in the reader is a word ID
tuple.
:param word_idx: word dictionary
:type word_idx: dict
:param n: sliding window size if type is ngram, otherwise max length of sequence
:type n: int
:param data_type: data type (ngram or sequence)
:type data_type: member variable of DataType (NGRAM or SEQ)
:return: Test reader creator
:rtype: callable
"""
return reader_creator('./simple-examples/data/ptb.valid.txt', word_idx, n,
data_type)
def fetch():
paddle.dataset.common.download(URL, "imikolov", MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
N = 5
word_dict = build_dict()
paddle.dataset.common.convert(path,
train(word_dict, N), 1000, "imikolov_train")
paddle.dataset.common.convert(path,
test(word_dict, N), 1000, "imikolov_test")
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
MNIST dataset.
This module will download dataset from http://yann.lecun.com/exdb/mnist/ and
parse training set and test set into paddle reader creators.
"""
import paddle.dataset.common
import subprocess
import numpy
import platform
__all__ = ['train', 'test', 'convert']
URL_PREFIX = 'http://yann.lecun.com/exdb/mnist/'
TEST_IMAGE_URL = URL_PREFIX + 't10k-images-idx3-ubyte.gz'
TEST_IMAGE_MD5 = '9fb629c4189551a2d022fa330f9573f3'
TEST_LABEL_URL = URL_PREFIX + 't10k-labels-idx1-ubyte.gz'
TEST_LABEL_MD5 = 'ec29112dd5afa0611ce80d1b7f02629c'
TRAIN_IMAGE_URL = URL_PREFIX + 'train-images-idx3-ubyte.gz'
TRAIN_IMAGE_MD5 = 'f68b3c2dcbeaaa9fbdd348bbdeb94873'
TRAIN_LABEL_URL = URL_PREFIX + 'train-labels-idx1-ubyte.gz'
TRAIN_LABEL_MD5 = 'd53e105ee54ea40749a09fcbcd1e9432'
def reader_creator(image_filename, label_filename, buffer_size):
def reader():
if platform.system() == 'Darwin':
zcat_cmd = 'gzcat'
elif platform.system() == 'Linux':
zcat_cmd = 'zcat'
else:
raise NotImplementedError()
# According to http://stackoverflow.com/a/38061619/724872, we
# cannot use standard package gzip here.
m = subprocess.Popen([zcat_cmd, image_filename], stdout=subprocess.PIPE)
m.stdout.read(16) # skip some magic bytes
l = subprocess.Popen([zcat_cmd, label_filename], stdout=subprocess.PIPE)
l.stdout.read(8) # skip some magic bytes
try: # reader could be break.
while True:
labels = numpy.fromfile(
l.stdout, 'ubyte', count=buffer_size).astype("int")
if labels.size != buffer_size:
break # numpy.fromfile returns empty slice after EOF.
images = numpy.fromfile(
m.stdout, 'ubyte', count=buffer_size * 28 * 28).reshape(
(buffer_size, 28 * 28)).astype('float32')
images = images / 255.0 * 2.0 - 1.0
for i in xrange(buffer_size):
yield images[i, :], int(labels[i])
finally:
m.terminate()
l.terminate()
return reader
def train():
"""
MNIST training set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 9].
:return: Training reader creator
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(TRAIN_IMAGE_URL, 'mnist',
TRAIN_IMAGE_MD5),
paddle.dataset.common.download(TRAIN_LABEL_URL, 'mnist',
TRAIN_LABEL_MD5), 100)
def test():
"""
MNIST test set creator.
It returns a reader creator, each sample in the reader is image pixels in
[0, 1] and label in [0, 9].
:return: Test reader creator.
:rtype: callable
"""
return reader_creator(
paddle.dataset.common.download(TEST_IMAGE_URL, 'mnist', TEST_IMAGE_MD5),
paddle.dataset.common.download(TEST_LABEL_URL, 'mnist', TEST_LABEL_MD5),
100)
def fetch():
paddle.dataset.common.download(TRAIN_IMAGE_URL, 'mnist', TRAIN_IMAGE_MD5)
paddle.dataset.common.download(TRAIN_LABEL_URL, 'mnist', TRAIN_LABEL_MD5)
paddle.dataset.common.download(TEST_IMAGE_URL, 'mnist', TEST_IMAGE_MD5)
paddle.dataset.common.download(TEST_LABEL_URL, 'mnist', TRAIN_LABEL_MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, train(), 1000, "minist_train")
paddle.dataset.common.convert(path, test(), 1000, "minist_test")
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Movielens 1-M dataset.
Movielens 1-M dataset contains 1 million ratings from 6000 users on 4000
movies, which was collected by GroupLens Research. This module will download
Movielens 1-M dataset from
http://files.grouplens.org/datasets/movielens/ml-1m.zip and parse training
set and test set into paddle reader creators.
"""
import zipfile
import paddle.dataset.common
import re
import random
import functools
__all__ = [
'train', 'test', 'get_movie_title_dict', 'max_movie_id', 'max_user_id',
'age_table', 'movie_categories', 'max_job_id', 'user_info', 'movie_info',
'convert'
]
age_table = [1, 18, 25, 35, 45, 50, 56]
URL = 'http://files.grouplens.org/datasets/movielens/ml-1m.zip'
MD5 = 'c4d9eecfca2ab87c1945afe126590906'
class MovieInfo(object):
"""
Movie id, title and categories information are stored in MovieInfo.
"""
def __init__(self, index, categories, title):
self.index = int(index)
self.categories = categories
self.title = title
def value(self):
"""
Get information from a movie.
"""
return [
self.index, [CATEGORIES_DICT[c] for c in self.categories],
[MOVIE_TITLE_DICT[w.lower()] for w in self.title.split()]
]
def __str__(self):
return "<MovieInfo id(%d), title(%s), categories(%s)>" % (
self.index, self.title, self.categories)
def __repr__(self):
return self.__str__()
class UserInfo(object):
"""
User id, gender, age, and job information are stored in UserInfo.
"""
def __init__(self, index, gender, age, job_id):
self.index = int(index)
self.is_male = gender == 'M'
self.age = age_table.index(int(age))
self.job_id = int(job_id)
def value(self):
"""
Get information from a user.
"""
return [self.index, 0 if self.is_male else 1, self.age, self.job_id]
def __str__(self):
return "<UserInfo id(%d), gender(%s), age(%d), job(%d)>" % (
self.index, "M"
if self.is_male else "F", age_table[self.age], self.job_id)
def __repr__(self):
return str(self)
MOVIE_INFO = None
MOVIE_TITLE_DICT = None
CATEGORIES_DICT = None
USER_INFO = None
def __initialize_meta_info__():
fn = paddle.dataset.common.download(URL, "movielens", MD5)
global MOVIE_INFO
if MOVIE_INFO is None:
pattern = re.compile(r'^(.*)\((\d+)\)$')
with zipfile.ZipFile(file=fn) as package:
for info in package.infolist():
assert isinstance(info, zipfile.ZipInfo)
MOVIE_INFO = dict()
title_word_set = set()
categories_set = set()
with package.open('ml-1m/movies.dat') as movie_file:
for i, line in enumerate(movie_file):
movie_id, title, categories = line.strip().split('::')
categories = categories.split('|')
for c in categories:
categories_set.add(c)
title = pattern.match(title).group(1)
MOVIE_INFO[int(movie_id)] = MovieInfo(
index=movie_id, categories=categories, title=title)
for w in title.split():
title_word_set.add(w.lower())
global MOVIE_TITLE_DICT
MOVIE_TITLE_DICT = dict()
for i, w in enumerate(title_word_set):
MOVIE_TITLE_DICT[w] = i
global CATEGORIES_DICT
CATEGORIES_DICT = dict()
for i, c in enumerate(categories_set):
CATEGORIES_DICT[c] = i
global USER_INFO
USER_INFO = dict()
with package.open('ml-1m/users.dat') as user_file:
for line in user_file:
uid, gender, age, job, _ = line.strip().split("::")
USER_INFO[int(uid)] = UserInfo(
index=uid, gender=gender, age=age, job_id=job)
return fn
def __reader__(rand_seed=0, test_ratio=0.1, is_test=False):
fn = __initialize_meta_info__()
rand = random.Random(x=rand_seed)
with zipfile.ZipFile(file=fn) as package:
with package.open('ml-1m/ratings.dat') as rating:
for line in rating:
if (rand.random() < test_ratio) == is_test:
uid, mov_id, rating, _ = line.strip().split("::")
uid = int(uid)
mov_id = int(mov_id)
rating = float(rating) * 2 - 5.0
mov = MOVIE_INFO[mov_id]
usr = USER_INFO[uid]
yield usr.value() + mov.value() + [[rating]]
def __reader_creator__(**kwargs):
return lambda: __reader__(**kwargs)
train = functools.partial(__reader_creator__, is_test=False)
test = functools.partial(__reader_creator__, is_test=True)
def get_movie_title_dict():
"""
Get movie title dictionary.
"""
__initialize_meta_info__()
return MOVIE_TITLE_DICT
def __max_index_info__(a, b):
if a.index > b.index:
return a
else:
return b
def max_movie_id():
"""
Get the maximum value of movie id.
"""
__initialize_meta_info__()
return reduce(__max_index_info__, MOVIE_INFO.viewvalues()).index
def max_user_id():
"""
Get the maximum value of user id.
"""
__initialize_meta_info__()
return reduce(__max_index_info__, USER_INFO.viewvalues()).index
def __max_job_id_impl__(a, b):
if a.job_id > b.job_id:
return a
else:
return b
def max_job_id():
"""
Get the maximum value of job id.
"""
__initialize_meta_info__()
return reduce(__max_job_id_impl__, USER_INFO.viewvalues()).job_id
def movie_categories():
"""
Get movie categoriges dictionary.
"""
__initialize_meta_info__()
return CATEGORIES_DICT
def user_info():
"""
Get user info dictionary.
"""
__initialize_meta_info__()
return USER_INFO
def movie_info():
"""
Get movie info dictionary.
"""
__initialize_meta_info__()
return MOVIE_INFO
def unittest():
for train_count, _ in enumerate(train()()):
pass
for test_count, _ in enumerate(test()()):
pass
print train_count, test_count
def fetch():
paddle.dataset.common.download(URL, "movielens", MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, train(), 1000, "movielens_train")
paddle.dataset.common.convert(path, test(), 1000, "movielens_test")
if __name__ == '__main__':
unittest()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
MQ2007 dataset
MQ2007 is a query set from Million Query track of TREC 2007. There are about 1700 queries in it with labeled documents. In MQ2007, the 5-fold cross
validation strategy is adopted and the 5-fold partitions are included in the package. In each fold, there are three subsets for learning: training set,
validation set and testing set.
MQ2007 dataset from website
http://research.microsoft.com/en-us/um/beijing/projects/letor/LETOR4.0/Data/MQ2007.rar and parse training set and test set into paddle reader creators
"""
import os
import functools
import rarfile
from common import download
import numpy as np
# URL = "http://research.microsoft.com/en-us/um/beijing/projects/letor/LETOR4.0/Data/MQ2007.rar"
URL = "http://www.bigdatalab.ac.cn/benchmark/upload/download_source/7b6dbbe2-842c-11e4-a536-bcaec51b9163_MQ2007.rar"
MD5 = "7be1640ae95c6408dab0ae7207bdc706"
def __initialize_meta_info__():
"""
download and extract the MQ2007 dataset
"""
fn = fetch()
rar = rarfile.RarFile(fn)
dirpath = os.path.dirname(fn)
rar.extractall(path=dirpath)
return dirpath
class Query(object):
"""
queries used for learning to rank algorithms. It is created from relevance scores, query-document feature vectors
Parameters:
----------
query_id : int
query_id in dataset, mapping from query to relevance documents
relevance_score : int
relevance score of query and document pair
feature_vector : array, dense feature
feature in vector format
description : string
comment section in query doc pair data
"""
def __init__(self,
query_id=-1,
relevance_score=-1,
feature_vector=None,
description=""):
self.query_id = query_id
self.relevance_score = relevance_score
if feature_vector is None:
self.feature_vector = []
else:
self.feature_vector = feature_vector
self.description = description
def __str__(self):
string = "%s %s %s" % (str(self.relevance_score), str(self.query_id),
" ".join(str(f) for f in self.feature_vector))
return string
# @classmethod
def _parse_(self, text):
"""
parse line into Query
"""
comment_position = text.find('#')
line = text[:comment_position].strip()
self.description = text[comment_position + 1:].strip()
parts = line.split()
if len(parts) != 48:
sys.stdout.write("expect 48 space split parts, get %d" %
(len(parts)))
return None
# format : 0 qid:10 1:0.000272 2:0.000000 ....
self.relevance_score = int(parts[0])
self.query_id = int(parts[1].split(':')[1])
for p in parts[2:]:
pair = p.split(':')
self.feature_vector.append(float(pair[1]))
return self
class QueryList(object):
"""
group query into list, every item in list is a Query
"""
def __init__(self, querylist=None):
self.query_id = -1
if querylist is None:
self.querylist = []
else:
self.querylist = querylist
for query in self.querylist:
if self.query_id == -1:
self.query_id = query.query_id
else:
if self.query_id != query.query_id:
raise ValueError("query in list must be same query_id")
def __iter__(self):
for query in self.querylist:
yield query
def __len__(self):
return len(self.querylist)
def __getitem__(self, i):
return self.querylist[i]
def _correct_ranking_(self):
if self.querylist is None:
return
self.querylist.sort(key=lambda x: x.relevance_score, reverse=True)
def _add_query(self, query):
if self.query_id == -1:
self.query_id = query.query_id
else:
if self.query_id != query.query_id:
raise ValueError("query in list must be same query_id")
self.querylist.append(query)
def gen_plain_txt(querylist):
"""
gen plain text in list for other usage
Paramters:
--------
querylist : querylist, one query match many docment pairs in list, see QueryList
return :
------
query_id : np.array, shape=(samples_num, )
label : np.array, shape=(samples_num, )
querylist : np.array, shape=(samples_num, feature_dimension)
"""
if not isinstance(querylist, QueryList):
querylist = QueryList(querylist)
querylist._correct_ranking_()
for query in querylist:
yield querylist.query_id, query.relevance_score, np.array(
query.feature_vector)
def gen_point(querylist):
"""
gen item in list for point-wise learning to rank algorithm
Paramters:
--------
querylist : querylist, one query match many docment pairs in list, see QueryList
return :
------
label : np.array, shape=(samples_num, )
querylist : np.array, shape=(samples_num, feature_dimension)
"""
if not isinstance(querylist, QueryList):
querylist = QueryList(querylist)
querylist._correct_ranking_()
for query in querylist:
yield query.relevance_score, np.array(query.feature_vector)
def gen_pair(querylist, partial_order="full"):
"""
gen pair for pair-wise learning to rank algorithm
Paramters:
--------
querylist : querylist, one query match many docment pairs in list, see QueryList
pairtial_order : "full" or "neighbour"
there is redudant in all possiable pair combinations, which can be simplifed
gen pairs for neighbour items or the full partial order pairs
return :
------
label : np.array, shape=(1)
query_left : np.array, shape=(1, feature_dimension)
query_right : same as left
"""
if not isinstance(querylist, QueryList):
querylist = QueryList(querylist)
querylist._correct_ranking_()
labels = []
docpairs = []
# C(n,2)
for i in range(len(querylist)):
query_left = querylist[i]
for j in range(i + 1, len(querylist)):
query_right = querylist[j]
if query_left.relevance_score > query_right.relevance_score:
labels.append([1])
docpairs.append([
np.array(query_left.feature_vector),
np.array(query_right.feature_vector)
])
elif query_left.relevance_score < query_right.relevance_score:
labels.append([1])
docpairs.append([
np.array(query_right.feature_vector),
np.array(query_left.feature_vector)
])
for label, pair in zip(labels, docpairs):
yield np.array(label), pair[0], pair[1]
def gen_list(querylist):
"""
gen item in list for list-wise learning to rank algorithm
Paramters:
--------
querylist : querylist, one query match many docment pairs in list, see QueryList
return :
------
label : np.array, shape=(samples_num, )
querylist : np.array, shape=(samples_num, feature_dimension)
"""
if not isinstance(querylist, QueryList):
querylist = QueryList(querylist)
querylist._correct_ranking_()
relevance_score_list = [[query.relevance_score] for query in querylist]
feature_vector_list = [query.feature_vector for query in querylist]
yield np.array(relevance_score_list), np.array(feature_vector_list)
def query_filter(querylists):
"""
filter query get only document with label 0.
label 0, 1, 2 means the relevance score document with query
parameters :
querylist : QueyList list
return :
querylist : QueyList list
"""
filter_query = []
for querylist in querylists:
relevance_score_list = [query.relevance_score for query in querylist]
if sum(relevance_score_list) != .0:
filter_query.append(querylist)
return filter_query
def load_from_text(filepath, shuffle=False, fill_missing=-1):
"""
parse data file into querys
"""
prev_query_id = -1
querylists = []
querylist = None
fn = __initialize_meta_info__()
with open(os.path.join(fn, filepath)) as f:
for line in f:
query = Query()
query = query._parse_(line)
if query == None:
continue
if query.query_id != prev_query_id:
if querylist is not None:
querylists.append(querylist)
querylist = QueryList()
prev_query_id = query.query_id
querylist._add_query(query)
if querylist is not None:
querylists.append(querylist)
return querylists
def __reader__(filepath, format="pairwise", shuffle=False, fill_missing=-1):
"""
Parameters
--------
filename : string
fill_missing : fill the missing value. default in MQ2007 is -1
Returns
------
yield
label query_left, query_right # format = "pairwise"
label querylist # format = "listwise"
"""
querylists = query_filter(
load_from_text(
filepath, shuffle=shuffle, fill_missing=fill_missing))
for querylist in querylists:
if format == "plain_txt":
yield next(gen_plain_txt(querylist))
elif format == "pointwise":
yield next(gen_point(querylist))
elif format == "pairwise":
for pair in gen_pair(querylist):
yield pair
elif format == "listwise":
yield next(gen_list(querylist))
train = functools.partial(__reader__, filepath="MQ2007/MQ2007/Fold1/train.txt")
test = functools.partial(__reader__, filepath="MQ2007/MQ2007/Fold1/test.txt")
def fetch():
return download(URL, "MQ2007", MD5)
if __name__ == "__main__":
fetch()
mytest = functools.partial(
__reader__, filepath="MQ2007/MQ2007/Fold1/sample", format="listwise")
for label, query in mytest():
print label, query
# /usr/bin/env python
# -*- coding:utf-8 -*-
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
The script fetch and preprocess movie_reviews data set that provided by NLTK
TODO(yuyang18): Complete dataset.
"""
import collections
from itertools import chain
import nltk
from nltk.corpus import movie_reviews
import paddle.dataset.common
__all__ = ['train', 'test', 'get_word_dict', 'convert']
NUM_TRAINING_INSTANCES = 1600
NUM_TOTAL_INSTANCES = 2000
def download_data_if_not_yet():
"""
Download the data set, if the data set is not download.
"""
try:
# make sure that nltk can find the data
if paddle.dataset.common.DATA_HOME not in nltk.data.path:
nltk.data.path.append(paddle.dataset.common.DATA_HOME)
movie_reviews.categories()
except LookupError:
print "Downloading movie_reviews data set, please wait....."
nltk.download(
'movie_reviews', download_dir=paddle.dataset.common.DATA_HOME)
print "Download data set success....."
print "Path is " + nltk.data.find('corpora/movie_reviews').path
def get_word_dict():
"""
Sorted the words by the frequency of words which occur in sample
:return:
words_freq_sorted
"""
words_freq_sorted = list()
word_freq_dict = collections.defaultdict(int)
download_data_if_not_yet()
for category in movie_reviews.categories():
for field in movie_reviews.fileids(category):
for words in movie_reviews.words(field):
word_freq_dict[words] += 1
words_sort_list = word_freq_dict.items()
words_sort_list.sort(cmp=lambda a, b: b[1] - a[1])
for index, word in enumerate(words_sort_list):
words_freq_sorted.append((word[0], index))
return words_freq_sorted
def sort_files():
"""
Sorted the sample for cross reading the sample
:return:
files_list
"""
files_list = list()
neg_file_list = movie_reviews.fileids('neg')
pos_file_list = movie_reviews.fileids('pos')
files_list = list(chain.from_iterable(zip(neg_file_list, pos_file_list)))
return files_list
def load_sentiment_data():
"""
Load the data set
:return:
data_set
"""
data_set = list()
download_data_if_not_yet()
words_ids = dict(get_word_dict())
for sample_file in sort_files():
words_list = list()
category = 0 if 'neg' in sample_file else 1
for word in movie_reviews.words(sample_file):
words_list.append(words_ids[word.lower()])
data_set.append((words_list, category))
return data_set
def reader_creator(data):
"""
Reader creator, generate an iterator for data set
:param data:
train data set or test data set
"""
for each in data:
yield each[0], each[1]
def train():
"""
Default training set reader creator
"""
data_set = load_sentiment_data()
return reader_creator(data_set[0:NUM_TRAINING_INSTANCES])
def test():
"""
Default test set reader creator
"""
data_set = load_sentiment_data()
return reader_creator(data_set[NUM_TRAINING_INSTANCES:])
def fetch():
nltk.download('movie_reviews', download_dir=paddle.dataset.common.DATA_HOME)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, train, 1000, "sentiment_train")
paddle.dataset.common.convert(path, test, 1000, "sentiment_test")
py_test(test_image SRCS test_image.py)
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.cifar
import unittest
class TestCIFAR(unittest.TestCase):
def check_reader(self, reader):
sum = 0
label = 0
for l in reader():
self.assertEqual(l[0].size, 3072)
if l[1] > label:
label = l[1]
sum += 1
return sum, label
def test_test10(self):
instances, max_label_value = self.check_reader(
paddle.dataset.cifar.test10())
self.assertEqual(instances, 10000)
self.assertEqual(max_label_value, 9)
def test_train10(self):
instances, max_label_value = self.check_reader(
paddle.dataset.cifar.train10())
self.assertEqual(instances, 50000)
self.assertEqual(max_label_value, 9)
def test_test100(self):
instances, max_label_value = self.check_reader(
paddle.dataset.cifar.test100())
self.assertEqual(instances, 10000)
self.assertEqual(max_label_value, 99)
def test_train100(self):
instances, max_label_value = self.check_reader(
paddle.dataset.cifar.train100())
self.assertEqual(instances, 50000)
self.assertEqual(max_label_value, 99)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.common
import unittest
import tempfile
import glob
class TestCommon(unittest.TestCase):
def test_md5file(self):
_, temp_path = tempfile.mkstemp()
with open(temp_path, 'w') as f:
f.write("Hello\n")
self.assertEqual('09f7e02f1290be211da707a266f153b3',
paddle.dataset.common.md5file(temp_path))
def test_download(self):
yi_avatar = 'https://avatars0.githubusercontent.com/u/1548775?v=3&s=460'
self.assertEqual(
paddle.dataset.common.DATA_HOME + '/test/1548775?v=3&s=460',
paddle.dataset.common.download(yi_avatar, 'test',
'f75287202d6622414c706c36c16f8e0d'))
def test_split(self):
def test_reader():
def reader():
for x in xrange(10):
yield x
return reader
_, temp_path = tempfile.mkstemp()
paddle.dataset.common.split(
test_reader(), 4, suffix=temp_path + '/test-%05d.pickle')
files = glob.glob(temp_path + '/test-%05d.pickle')
self.assertEqual(len(files), 3)
def test_cluster_file_reader(self):
_, temp_path = tempfile.mkstemp()
for x in xrange(5):
with open(temp_path + '/%05d.test' % x) as f:
f.write('%d\n' % x)
reader = paddle.dataset.common.cluster_files_reader(
temp_path + '/*.test', 5, 0)
for idx, e in enumerate(reader()):
self.assertEqual(e, str("0"))
def test_convert(self):
record_num = 10
num_shards = 4
def test_reader():
def reader():
for x in xrange(record_num):
yield x
return reader
path = tempfile.mkdtemp()
paddle.dataset.common.convert(path,
test_reader(), num_shards,
'random_images')
files = glob.glob(path + '/random_images-*')
self.assertEqual(len(files), num_shards)
recs = []
for i in range(0, num_shards):
n = "%s/random_images-%05d-of-%05d" % (path, i, num_shards - 1)
r = recordio.reader(n)
while True:
d = r.read()
if d is None:
break
recs.append(d)
recs.sort()
self.assertEqual(total, record_num)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.flowers
import unittest
class TestFlowers(unittest.TestCase):
def check_reader(self, reader):
sum = 0
label = 0
size = 224 * 224 * 3
for l in reader():
self.assertEqual(l[0].size, size)
if l[1] > label:
label = l[1]
sum += 1
return sum, label
def test_train(self):
instances, max_label_value = self.check_reader(
paddle.dataset.flowers.train())
self.assertEqual(instances, 6149)
self.assertEqual(max_label_value, 102)
def test_test(self):
instances, max_label_value = self.check_reader(
paddle.dataset.flowers.test())
self.assertEqual(instances, 1020)
self.assertEqual(max_label_value, 102)
def test_valid(self):
instances, max_label_value = self.check_reader(
paddle.dataset.flowers.valid())
self.assertEqual(instances, 1020)
self.assertEqual(max_label_value, 102)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.imdb
import unittest
import re
TRAIN_POS_PATTERN = re.compile("aclImdb/train/pos/.*\.txt$")
TRAIN_NEG_PATTERN = re.compile("aclImdb/train/neg/.*\.txt$")
TRAIN_PATTERN = re.compile("aclImdb/train/.*\.txt$")
TEST_POS_PATTERN = re.compile("aclImdb/test/pos/.*\.txt$")
TEST_NEG_PATTERN = re.compile("aclImdb/test/neg/.*\.txt$")
TEST_PATTERN = re.compile("aclImdb/test/.*\.txt$")
class TestIMDB(unittest.TestCase):
word_idx = None
def test_build_dict(self):
if self.word_idx == None:
self.word_idx = paddle.dataset.imdb.build_dict(TRAIN_PATTERN, 150)
self.assertEqual(len(self.word_idx), 7036)
def check_dataset(self, dataset, expected_size):
if self.word_idx == None:
self.word_idx = paddle.dataset.imdb.build_dict(TRAIN_PATTERN, 150)
sum = 0
for l in dataset(self.word_idx):
self.assertEqual(l[1], sum % 2)
sum += 1
self.assertEqual(sum, expected_size)
def test_train(self):
self.check_dataset(paddle.dataset.imdb.train, 25000)
def test_test(self):
self.check_dataset(paddle.dataset.imdb.test, 25000)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.imikolov
import unittest
WORD_DICT = paddle.dataset.imikolov.build_dict()
class TestMikolov(unittest.TestCase):
def check_reader(self, reader, n):
for l in reader():
self.assertEqual(len(l), n)
def test_train(self):
n = 5
self.check_reader(paddle.dataset.imikolov.train(WORD_DICT, n), n)
first_line = 'aer banknote berlitz calloway centrust cluett fromstein '\
'gitano guterman hydro-quebec ipo kia memotec mlx nahb punts '\
'rake regatta rubens sim snack-food ssangyong swapo wachter'
first_line = [
WORD_DICT.get(ch, WORD_DICT['<unk>'])
for ch in first_line.split(' ')
]
for l in paddle.dataset.imikolov.train(
WORD_DICT, n=-1,
data_type=paddle.dataset.imikolov.DataType.SEQ)():
read_line = l[0][1:]
break
self.assertEqual(first_line, read_line)
def test_test(self):
n = 5
self.check_reader(paddle.dataset.imikolov.test(WORD_DICT, n), n)
first_line = 'consumers may want to move their telephones a little '\
'closer to the tv set'
first_line = [
WORD_DICT.get(ch, WORD_DICT['<unk>'])
for ch in first_line.split(' ')
]
for l in paddle.dataset.imikolov.test(
WORD_DICT, n=-1,
data_type=paddle.dataset.imikolov.DataType.SEQ)():
read_line = l[0][1:]
break
self.assertEqual(first_line, read_line)
def test_total(self):
_, idx = zip(*WORD_DICT.items())
self.assertEqual(sorted(idx)[-1], len(WORD_DICT) - 1)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.mnist
import unittest
class TestMNIST(unittest.TestCase):
def check_reader(self, reader):
sum = 0
label = 0
for l in reader():
self.assertEqual(l[0].size, 784)
if l[1] > label:
label = l[1]
sum += 1
return sum, label
def test_train(self):
instances, max_label_value = self.check_reader(
paddle.dataset.mnist.train())
self.assertEqual(instances, 60000)
self.assertEqual(max_label_value, 9)
def test_test(self):
instances, max_label_value = self.check_reader(
paddle.dataset.mnist.test())
self.assertEqual(instances, 10000)
self.assertEqual(max_label_value, 9)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.mq2007
import unittest
class TestMQ2007(unittest.TestCase):
def test_pairwise(self):
for label, query_left, query_right in paddle.dataset.mq2007.test(
format="pairwise"):
self.assertEqual(query_left.shape(), (46, ))
self.assertEqual(query_right.shape(), (46, ))
def test_listwise(self):
for label_array, query_array in paddle.dataset.mq2007.test(
format="listwise"):
self.assertEqual(len(label_array), len(query_array))
if __name__ == "__main__":
unittest.main()
# Copyright (c) 2018 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
import numpy as np
import paddle.dataset.image as image
class Image(unittest.TestCase):
def test_resize_flip_chw(self):
# resize
im = image.load_image('cat.jpg')
im = image.resize_short(im, 256)
self.assertEqual(256, min(im.shape[:2]))
self.assertEqual(3, im.shape[2])
# flip
im = image.left_right_flip(im)
im2 = np.flip(im, 1)
self.assertEqual(im.all(), im2.all())
# to_chw
h, w, c = im.shape
im = image.to_chw(im)
self.assertEqual(c, im.shape[0])
self.assertEqual(h, im.shape[1])
self.assertEqual(w, im.shape[2])
if __name__ == '__main__':
unittest.main()
# /usr/bin/env python
# -*- coding:utf-8 -*-
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
import nltk
import paddle.dataset.sentiment as st
from nltk.corpus import movie_reviews
class TestSentimentMethods(unittest.TestCase):
def test_get_word_dict(self):
word_dict = st.get_word_dict()[0:10]
test_word_list = [(u',', 0), (u'the', 1), (u'.', 2), (u'a', 3),
(u'and', 4), (u'of', 5), (u'to', 6), (u"'", 7),
(u'is', 8), (u'in', 9)]
for idx, each in enumerate(word_dict):
self.assertEqual(each, test_word_list[idx])
self.assertTrue("/root/.cache/paddle/dataset" in nltk.data.path)
def test_sort_files(self):
last_label = ''
for sample_file in st.sort_files():
current_label = sample_file.split("/")[0]
self.assertNotEqual(current_label, last_label)
last_label = current_label
def test_data_set(self):
data_set = st.load_sentiment_data()
last_label = -1
for each in st.test():
self.assertNotEqual(each[1], last_label)
last_label = each[1]
self.assertEqual(len(data_set), st.NUM_TOTAL_INSTANCES)
self.assertEqual(len(list(st.train())), st.NUM_TRAINING_INSTANCES)
self.assertEqual(
len(list(st.test())),
(st.NUM_TOTAL_INSTANCES - st.NUM_TRAINING_INSTANCES))
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.voc2012
import unittest
class TestVOC(unittest.TestCase):
def check_reader(self, reader):
sum = 0
label = 0
for l in reader():
self.assertEqual(l[0].size, 3 * l[1].size)
sum += 1
return sum
def test_train(self):
count = self.check_reader(paddle.dataset.voc_seg.train())
self.assertEqual(count, 2913)
def test_test(self):
count = self.check_reader(paddle.dataset.voc_seg.test())
self.assertEqual(count, 1464)
def test_val(self):
count = self.check_reader(paddle.dataset.voc_seg.val())
self.assertEqual(count, 1449)
if __name__ == '__main__':
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import paddle.dataset.wmt16
import unittest
class TestWMT16(unittest.TestCase):
def checkout_one_sample(self, sample):
# train data has 3 field: source language word indices,
# target language word indices, and target next word indices.
self.assertEqual(len(sample), 3)
# test start mark and end mark in source word indices.
self.assertEqual(sample[0][0], 0)
self.assertEqual(sample[0][-1], 1)
# test start mask in target word indices
self.assertEqual(sample[1][0], 0)
# test en mask in target next word indices
self.assertEqual(sample[2][-1], 1)
def test_train(self):
for idx, sample in enumerate(
paddle.dataset.wmt16.train(
src_dict_size=100000, trg_dict_size=100000)()):
if idx >= 10: break
self.checkout_one_sample(sample)
def test_test(self):
for idx, sample in enumerate(
paddle.dataset.wmt16.test(
src_dict_size=1000, trg_dict_size=1000)()):
if idx >= 10: break
self.checkout_one_sample(sample)
def test_val(self):
for idx, sample in enumerate(
paddle.dataset.wmt16.validation(
src_dict_size=1000, trg_dict_size=1000)()):
if idx >= 10: break
self.checkout_one_sample(sample)
def test_get_dict(self):
dict_size = 1000
word_dict = paddle.dataset.wmt16.get_dict("en", dict_size, True)
self.assertEqual(len(word_dict), dict_size)
self.assertEqual(word_dict[0], "<s>")
self.assertEqual(word_dict[1], "<e>")
self.assertEqual(word_dict[2], "<unk>")
if __name__ == "__main__":
unittest.main()
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
UCI Housing dataset.
This module will download dataset from
https://archive.ics.uci.edu/ml/machine-learning-databases/housing/ and
parse training set and test set into paddle reader creators.
"""
import numpy as np
import os
import paddle.dataset.common
__all__ = ['train', 'test']
URL = 'https://archive.ics.uci.edu/ml/machine-learning-databases/housing/housing.data'
MD5 = 'd4accdce7a25600298819f8e28e8d593'
feature_names = [
'CRIM', 'ZN', 'INDUS', 'CHAS', 'NOX', 'RM', 'AGE', 'DIS', 'RAD', 'TAX',
'PTRATIO', 'B', 'LSTAT', 'convert'
]
UCI_TRAIN_DATA = None
UCI_TEST_DATA = None
URL_MODEL = 'https://github.com/PaddlePaddle/book/raw/develop/01.fit_a_line/fit_a_line.tar'
MD5_MODEL = '52fc3da8ef3937822fcdd87ee05c0c9b'
def feature_range(maximums, minimums):
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig, ax = plt.subplots()
feature_num = len(maximums)
ax.bar(range(feature_num), maximums - minimums, color='r', align='center')
ax.set_title('feature scale')
plt.xticks(range(feature_num), feature_names)
plt.xlim([-1, feature_num])
fig.set_figheight(6)
fig.set_figwidth(10)
if not os.path.exists('./image'):
os.makedirs('./image')
fig.savefig('image/ranges.png', dpi=48)
plt.close(fig)
def load_data(filename, feature_num=14, ratio=0.8):
global UCI_TRAIN_DATA, UCI_TEST_DATA
if UCI_TRAIN_DATA is not None and UCI_TEST_DATA is not None:
return
data = np.fromfile(filename, sep=' ')
data = data.reshape(data.shape[0] / feature_num, feature_num)
maximums, minimums, avgs = data.max(axis=0), data.min(axis=0), data.sum(
axis=0) / data.shape[0]
feature_range(maximums[:-1], minimums[:-1])
for i in xrange(feature_num - 1):
data[:, i] = (data[:, i] - avgs[i]) / (maximums[i] - minimums[i])
offset = int(data.shape[0] * ratio)
UCI_TRAIN_DATA = data[:offset]
UCI_TEST_DATA = data[offset:]
def train():
"""
UCI_HOUSING training set creator.
It returns a reader creator, each sample in the reader is features after
normalization and price number.
:return: Training reader creator
:rtype: callable
"""
global UCI_TRAIN_DATA
load_data(paddle.dataset.common.download(URL, 'uci_housing', MD5))
def reader():
for d in UCI_TRAIN_DATA:
yield d[:-1], d[-1:]
return reader
def test():
"""
UCI_HOUSING test set creator.
It returns a reader creator, each sample in the reader is features after
normalization and price number.
:return: Test reader creator
:rtype: callable
"""
global UCI_TEST_DATA
load_data(paddle.dataset.common.download(URL, 'uci_housing', MD5))
def reader():
for d in UCI_TEST_DATA:
yield d[:-1], d[-1:]
return reader
def fetch():
paddle.dataset.common.download(URL, 'uci_housing', MD5)
def convert(path):
"""
Converts dataset to recordio format
"""
paddle.dataset.common.convert(path, train(), 1000, "uci_housing_train")
paddle.dataset.common.convert(path, test(), 1000, "uci_houseing_test")
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......@@ -276,20 +276,25 @@ class DistributeTranspiler:
suff_idx = v.name.find(".trainer_")
if suff_idx >= 0:
orig_var_name = v.name[:suff_idx]
pserver_program.global_block().create_var(
else:
orig_var_name = v.name
single_trainer_var = pserver_program.global_block().create_var(
name=orig_var_name,
persistable=True,
type=v.type,
dtype=v.dtype,
shape=v.shape)
for trainer_id in xrange(self.trainers):
var = pserver_program.global_block().create_var(
name="%s.trainer_%d" % (orig_var_name, trainer_id),
persistable=False,
type=v.type,
dtype=v.dtype,
shape=v.shape)
recv_inputs.append(var)
if self.trainers > 1:
for trainer_id in xrange(self.trainers):
var = pserver_program.global_block().create_var(
name="%s.trainer_%d" % (orig_var_name, trainer_id),
persistable=False,
type=v.type,
dtype=v.dtype,
shape=v.shape)
recv_inputs.append(var)
else:
recv_inputs.append(single_trainer_var)
# step3
optimize_block = pserver_program.create_block(0)
......@@ -511,8 +516,11 @@ class DistributeTranspiler:
def _append_split_op(self, program, gradblocks):
# Split variables that need to be split and append respective ops
add_suffix = False
if self.trainers > 1:
add_suffix = True
var_mapping = self._create_vars_from_blocklist(
program, gradblocks, add_trainer_suffix=True)
program, gradblocks, add_trainer_suffix=add_suffix)
for varname, splited_vars in var_mapping.iteritems():
# variable that don't need to split have empty splited_vars
if len(splited_vars) <= 1:
......
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......@@ -49,7 +49,6 @@ __activations__ = [
__all__ = [
'mean',
'mul',
'reshape',
'scale',
'sigmoid_cross_entropy_with_logits',
'elementwise_add',
......
......@@ -13,7 +13,7 @@
# limitations under the License.
import numpy as np
import paddle.v2 as paddle
import paddle
import paddle.fluid as fluid
import paddle.fluid.core as core
import paddle.fluid.framework as framework
......
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