format header includes & update setup info

deep_speech_2/README.md

@@ -82,6 +82,16 @@ sh run.sh
 cd ..
 ```
 
+### Setup decoders
+
+```shell
+cd models/swig_decoders
+sh setup.sh
+cd ../..
+```
+
+These commands will install the decoders that translate the ouptut probability  vectors of DS2 model to text data, incuding CTC greedy decoder, CTC beam search decoder and its batch version.
+
 ### Inference
 
 For GPU inference

deep_speech_2/deploy.py

-"""Deployment for DeepSpeech2 model."""
-from __future__ import absolute_import
-from __future__ import division
-from __future__ import print_function
-
-import argparse
-import gzip
-import distutils.util
-import multiprocessing
-import paddle.v2 as paddle
-from data_utils.data import DataGenerator
-from layer import deep_speech2
-from deploy.swig_decoders_wrapper import *
-from error_rate import wer
-import utils
-import time
-
-parser = argparse.ArgumentParser(description=__doc__)
-parser.add_argument(
-    "--num_samples",
-    default=10,
-    type=int,
-    help="Number of samples for inference. (default: %(default)s)")
-parser.add_argument(
-    "--num_conv_layers",
-    default=2,
-    type=int,
-    help="Convolution layer number. (default: %(default)s)")
-parser.add_argument(
-    "--num_rnn_layers",
-    default=3,
-    type=int,
-    help="RNN layer number. (default: %(default)s)")
-parser.add_argument(
-    "--rnn_layer_size",
-    default=512,
-    type=int,
-    help="RNN layer cell number. (default: %(default)s)")
-parser.add_argument(
-    "--use_gpu",
-    default=True,
-    type=distutils.util.strtobool,
-    help="Use gpu or not. (default: %(default)s)")
-parser.add_argument(
-    "--num_threads_data",
-    default=multiprocessing.cpu_count(),
-    type=int,
-    help="Number of cpu threads for preprocessing data. (default: %(default)s)")
-parser.add_argument(
-    "--num_processes_beam_search",
-    default=multiprocessing.cpu_count(),
-    type=int,
-    help="Number of cpu processes for beam search. (default: %(default)s)")
-parser.add_argument(
-    "--mean_std_filepath",
-    default='mean_std.npz',
-    type=str,
-    help="Manifest path for normalizer. (default: %(default)s)")
-parser.add_argument(
-    "--decode_manifest_path",
-    default='datasets/manifest.test',
-    type=str,
-    help="Manifest path for decoding. (default: %(default)s)")
-parser.add_argument(
-    "--model_filepath",
-    default='checkpoints/params.latest.tar.gz',
-    type=str,
-    help="Model filepath. (default: %(default)s)")
-parser.add_argument(
-    "--vocab_filepath",
-    default='datasets/vocab/eng_vocab.txt',
-    type=str,
-    help="Vocabulary filepath. (default: %(default)s)")
-parser.add_argument(
-    "--decode_method",
-    default='beam_search',
-    type=str,
-    help="Method for ctc decoding: beam_search or beam_search_batch. "
-    "(default: %(default)s)")
-parser.add_argument(
-    "--beam_size",
-    default=500,
-    type=int,
-    help="Width for beam search decoding. (default: %(default)d)")
-parser.add_argument(
-    "--num_results_per_sample",
-    default=1,
-    type=int,
-    help="Number of output per sample in beam search. (default: %(default)d)")
-parser.add_argument(
-    "--language_model_path",
-    default="lm/data/common_crawl_00.prune01111.trie.klm",
-    type=str,
-    help="Path for language model. (default: %(default)s)")
-parser.add_argument(
-    "--alpha",
-    default=1.5,
-    type=float,
-    help="Parameter associated with language model. (default: %(default)f)")
-parser.add_argument(
-    "--beta",
-    default=0.3,
-    type=float,
-    help="Parameter associated with word count. (default: %(default)f)")
-parser.add_argument(
-    "--cutoff_prob",
-    default=1.0,
-    type=float,
-    help="The cutoff probability of pruning"
-    "in beam search. (default: %(default)f)")
-parser.add_argument(
-    "--cutoff_top_n",
-    default=40,
-    type=int,
-    help="The cutoff number of pruning"
-    "in beam search. (default: %(default)f)")
-args = parser.parse_args()
-
-
-def infer():
-    """Deployment for DeepSpeech2."""
-    # initialize data generator
-    data_generator = DataGenerator(
-        vocab_filepath=args.vocab_filepath,
-        mean_std_filepath=args.mean_std_filepath,
-        augmentation_config='{}',
-        num_threads=args.num_threads_data)
-
-    # create network config
-    # paddle.data_type.dense_array is used for variable batch input.
-    # The size 161 * 161 is only an placeholder value and the real shape
-    # of input batch data will be induced during training.
-    audio_data = paddle.layer.data(
-        name="audio_spectrogram", type=paddle.data_type.dense_array(161 * 161))
-    text_data = paddle.layer.data(
-        name="transcript_text",
-        type=paddle.data_type.integer_value_sequence(data_generator.vocab_size))
-    output_probs, _ = deep_speech2(
-        audio_data=audio_data,
-        text_data=text_data,
-        dict_size=data_generator.vocab_size,
-        num_conv_layers=args.num_conv_layers,
-        num_rnn_layers=args.num_rnn_layers,
-        rnn_size=args.rnn_layer_size)
-
-    # load parameters
-    parameters = paddle.parameters.Parameters.from_tar(
-        gzip.open(args.model_filepath))
-
-    # prepare infer data
-    batch_reader = data_generator.batch_reader_creator(
-        manifest_path=args.decode_manifest_path,
-        batch_size=args.num_samples,
-        min_batch_size=1,
-        sortagrad=False,
-        shuffle_method=None)
-    infer_data = batch_reader().next()
-
-    # run inference
-    inferer = paddle.inference.Inference(
-        output_layer=output_probs, parameters=parameters)
-    infer_results = inferer.infer(input=infer_data)
-
-    num_steps = len(infer_results) // len(infer_data)
-    probs_split = [
-        infer_results[i * num_steps:(i + 1) * num_steps]
-        for i in xrange(len(infer_data))
-    ]
-
-    # targe transcription
-    target_transcription = [
-        ''.join(
-            [data_generator.vocab_list[index] for index in infer_data[i][1]])
-        for i, probs in enumerate(probs_split)
-    ]
-
-    # external scorer
-    ext_scorer = Scorer(
-        alpha=args.alpha, beta=args.beta, model_path=args.language_model_path)
-
-    # from unicode to string
-    vocab_list = [chars.encode("utf-8") for chars in data_generator.vocab_list]
-
-    # The below two steps, i.e. setting char map and filling dictionary of
-    # FST will be completed implicitly when ext_scorer first used.But to save
-    # the time of decoding the first audio sample, they are done in advance.
-    ext_scorer.set_char_map(vocab_list)
-    # only for ward based language model
-    ext_scorer.fill_dictionary(True)
-
-    # for word error rate metric
-    wer_sum, wer_counter = 0.0, 0
-
-    ## decode and print
-    time_begin = time.time()
-    batch_beam_results = []
-    if args.decode_method == 'beam_search':
-        for i, probs in enumerate(probs_split):
-            beam_result = ctc_beam_search_decoder(
-                probs_seq=probs,
-                beam_size=args.beam_size,
-                vocabulary=vocab_list,
-                blank_id=len(vocab_list),
-                cutoff_prob=args.cutoff_prob,
-                cutoff_top_n=args.cutoff_top_n,
-                ext_scoring_func=ext_scorer, )
-            batch_beam_results += [beam_result]
-    else:
-        batch_beam_results = ctc_beam_search_decoder_batch(
-            probs_split=probs_split,
-            beam_size=args.beam_size,
-            vocabulary=vocab_list,
-            blank_id=len(vocab_list),
-            num_processes=args.num_processes_beam_search,
-            cutoff_prob=args.cutoff_prob,
-            cutoff_top_n=args.cutoff_top_n,
-            ext_scoring_func=ext_scorer, )
-
-    for i, beam_result in enumerate(batch_beam_results):
-        print("\nTarget Transcription:\t%s" % target_transcription[i])
-        print("Beam %d: %f \t%s" % (0, beam_result[0][0], beam_result[0][1]))
-        wer_cur = wer(target_transcription[i], beam_result[0][1])
-        wer_sum += wer_cur
-        wer_counter += 1
-        print("cur wer = %f , average wer = %f" %
-              (wer_cur, wer_sum / wer_counter))
-
-    print("time for decoding = %f" % (time.time() - time_begin))
-
-
-def main():
-    utils.print_arguments(args)
-    paddle.init(use_gpu=args.use_gpu, trainer_count=1)
-    infer()
-
-
-if __name__ == '__main__':
-    main()

deep_speech_2/models/swig_decoders/README.md

-
-The decoders for deployment developed in C++ are a better alternative for the prototype decoders in Pytthon, with more powerful performance in both speed and accuracy.
-
-### Installation
-
-The build depends on several open-sourced projects, first clone or download them to current directory (i.e., `deep_speech_2/deploy`)
-
-- [**KenLM**](https://github.com/kpu/kenlm/): Faster and Smaller Language Model Queries
-
-```shell
-git clone https://github.com/kpu/kenlm.git
-```
-
-- [**OpenFst**](http://www.openfst.org/twiki/bin/view/FST/WebHome): A library for finite-state transducers
-
-```shell
-wget http://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.6.3.tar.gz
-tar -xzvf openfst-1.6.3.tar.gz
-```
-
-
-- [**ThreadPool**](http://progsch.net/wordpress/): A library for C++ thread pool
-
-```shell
-git clone https://github.com/progschj/ThreadPool.git
-```
-
-- [**SWIG**](http://www.swig.org): A tool that provides the Python interface for the decoders, please make sure it being installed.
-
-Then run the setup
-
-```shell
-python setup.py install --num_processes 4
-cd ..
-```
-
-### Usage
-
-The decoders for deployment share almost the same interface with the prototye decoders in Python. After the installation succeeds, these decoders are very convenient for call in Python, and a complete example in ```deploy.py``` can be refered.
-
-For GPU deployment
-
-```
-CUDA_VISIBLE_DEVICES=0 python deploy.py
-```
-
-For CPU deployment
-
-```
-python deploy.py --use_gpu=False
-```
-
-More help for arguments
-
-```
-python deploy.py --help
-```

deep_speech_2/models/swig_decoders/ctc_decoders.cpp

 #include "ctc_decoders.h"
+
 #include <algorithm>
 #include <cmath>
 #include <iostream>
 #include <limits>
 #include <map>
 #include <utility>
+
+#include "fst/fstlib.h"
 #include "ThreadPool.h"
+
 #include "decoder_utils.h"
-#include "fst/fstlib.h"
 #include "path_trie.h"
 
-std::string ctc_greedy_decoder(std::vector<std::vector<double>> probs_seq,
-                               std::vector<std::string> vocabulary) {
+std::string ctc_greedy_decoder(
+    const std::vector<std::vector<double>>& probs_seq,
+    const std::vector<std::string>& vocabulary) {
   // dimension check
   int num_time_steps = probs_seq.size();
   for (int i = 0; i < num_time_steps; i++) {
@@ -56,7 +60,7 @@ std::string ctc_greedy_decoder(std::vector<std::vector<double>> probs_seq,
 }
 
 std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
-    std::vector<std::vector<double>> probs_seq,
+    const std::vector<std::vector<double>>& probs_seq,
     int beam_size,
     std::vector<std::string> vocabulary,
     int blank_id,
@@ -64,7 +68,7 @@ std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
     int cutoff_top_n,
     Scorer *extscorer) {
   // dimension check
-  int num_time_steps = probs_seq.size();
+  size_t num_time_steps = probs_seq.size();
   for (int i = 0; i < num_time_steps; i++) {
     if (probs_seq[i].size() != vocabulary.size() + 1) {
       std::cout << " The shape of probs_seq does not match"
@@ -278,9 +282,9 @@ std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
 
 std::vector<std::vector<std::pair<double, std::string>>>
 ctc_beam_search_decoder_batch(
-    std::vector<std::vector<std::vector<double>>> probs_split,
+    const std::vector<std::vector<std::vector<double>>>& probs_split,
     int beam_size,
-    std::vector<std::string> vocabulary,
+    const std::vector<std::string>& vocabulary,
     int blank_id,
     int num_processes,
     double cutoff_prob,

deep_speech_2/models/swig_decoders/ctc_decoders.h

@@ -4,6 +4,7 @@
 #include <string>
 #include <utility>
 #include <vector>
+
 #include "scorer.h"
 
 /* CTC Best Path Decoder
@@ -16,8 +17,9 @@
  *     A vector that each element is a pair of score  and decoding result,
  *     in desending order.
  */
-std::string ctc_greedy_decoder(std::vector<std::vector<double>> probs_seq,
-                                  std::vector<std::string> vocabulary);
+std::string ctc_greedy_decoder(
+    const std::vector<std::vector<double>>& probs_seq,
+    const std::vector<std::string>& vocabulary);
 
 /* CTC Beam Search Decoder
 
@@ -35,7 +37,7 @@ std::string ctc_greedy_decoder(std::vector<std::vector<double>> probs_seq,
  *     in desending order.
 */
 std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
-    std::vector<std::vector<double>> probs_seq,
+    const std::vector<std::vector<double>>& probs_seq,
     int beam_size,
     std::vector<std::string> vocabulary,
     int blank_id,
@@ -43,8 +45,7 @@ std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
     int cutoff_top_n = 40,
     Scorer *ext_scorer = NULL);
 
-/* CTC Beam Search Decoder for batch data, the interface is consistent with the
- * original decoder in Python version.
+/* CTC Beam Search Decoder for batch data
 
  * Parameters:
  *     probs_seq: 3-D vector that each element is a 2-D vector that can be used
@@ -63,9 +64,9 @@ std::vector<std::pair<double, std::string>> ctc_beam_search_decoder(
 */
 std::vector<std::vector<std::pair<double, std::string>>>
 ctc_beam_search_decoder_batch(
-    std::vector<std::vector<std::vector<double>>> probs_split,
+    const std::vector<std::vector<std::vector<double>>>& probs_split,
     int beam_size,
-    std::vector<std::string> vocabulary,
+    const std::vector<std::string>& vocabulary,
     int blank_id,
     int num_processes,
     double cutoff_prob = 1.0,

deep_speech_2/models/swig_decoders/decoder_utils.cpp

 #include "decoder_utils.h"
+
 #include <algorithm>
 #include <cmath>
 #include <limits>

deep_speech_2/models/swig_decoders/path_trie.cpp

+#include "path_trie.h"
+
 #include <algorithm>
 #include <limits>
 #include <memory>
@@ -5,7 +7,6 @@
 #include <vector>
 
 #include "decoder_utils.h"
-#include "path_trie.h"
 
 PathTrie::PathTrie() {
   log_prob_b_prev = -NUM_FLT_INF;

deep_speech_2/models/swig_decoders/path_trie.h

 #ifndef PATH_TRIE_H
 #define PATH_TRIE_H
 #pragma once
-#include <fst/fstlib.h>
 #include <algorithm>
 #include <limits>
 #include <memory>
 #include <utility>
 #include <vector>
+#include <fst/fstlib.h>
 
 using FSTMATCH = fst::SortedMatcher<fst::StdVectorFst>;
 
@@ -45,12 +45,12 @@ public:
 private:
   int _ROOT;
   bool _exists;
+  bool _has_dictionary;
 
   std::vector<std::pair<int, PathTrie*>> _children;
 
   fst::StdVectorFst* _dictionary;
   fst::StdVectorFst::StateId _dictionary_state;
-  bool _has_dictionary;
   std::shared_ptr<FSTMATCH> _matcher;
 };
 

deep_speech_2/models/swig_decoders/scorer.cpp

 #include "scorer.h"
+
 #include <unistd.h>
 #include <iostream>
-#include "decoder_utils.h"
+
 #include "lm/config.hh"
 #include "lm/model.hh"
 #include "lm/state.hh"
 #include "util/string_piece.hh"
 #include "util/tokenize_piece.hh"
 
+#include "decoder_utils.h"
+
 using namespace lm::ngram;
 
 Scorer::Scorer(double alpha, double beta, const std::string& lm_path) {
@@ -122,7 +125,7 @@ std::vector<std::string> Scorer::split_labels(const std::vector<int>& labels) {
   return words;
 }
 
-void Scorer::set_char_map(std::vector<std::string> char_list) {
+void Scorer::set_char_map(const std::vector<std::string>& char_list) {
   _char_list = char_list;
   _char_map.clear();
 

deep_speech_2/models/swig_decoders/scorer.h

@@ -5,12 +5,14 @@
 #include <string>
 #include <unordered_map>
 #include <vector>
+
 #include "lm/enumerate_vocab.hh"
 #include "lm/virtual_interface.hh"
 #include "lm/word_index.hh"
-#include "path_trie.h"
 #include "util/string_piece.hh"
 
+#include "path_trie.h"
+
 const double OOV_SCORE = -1000.0;
 const std::string START_TOKEN = "<s>";
 const std::string UNK_TOKEN = "<unk>";
@@ -28,11 +30,13 @@ public:
   std::vector<std::string> vocabulary;
 };
 
-// External scorer to query languange score for n-gram or sentence.
-// Example:
-//     Scorer scorer(alpha, beta, "path_of_language_model");
-//     scorer.get_log_cond_prob({ "WORD1", "WORD2", "WORD3" });
-//     scorer.get_sent_log_prob({ "WORD1", "WORD2", "WORD3" });
+/* External scorer to query languange score for n-gram or sentence.
+ *
+ * Example:
+ *     Scorer scorer(alpha, beta, "path_of_language_model");
+ *     scorer.get_log_cond_prob({ "WORD1", "WORD2", "WORD3" });
+ *     scorer.get_sent_log_prob({ "WORD1", "WORD2", "WORD3" });
+ */
 class Scorer {
 public:
   Scorer(double alpha, double beta, const std::string& lm_path);
@@ -58,7 +62,7 @@ public:
   void fill_dictionary(bool add_space);
 
   // set char map
-  void set_char_map(std::vector<std::string> char_list);
+  void set_char_map(const std::vector<std::string>& char_list);
 
   std::vector<std::string> split_labels(const std::vector<int>& labels);
 

deep_speech_2/models/swig_decoders/setup.sh

+#!/bin/bash
+
+if [ ! -d kenlm ]; then
+    git clone https://github.com/luotao1/kenlm.git
+    echo -e "\n"
+fi
+
+if [ ! -d openfst-1.6.3 ]; then
+    echo "Download and extract openfst ..."
+    wget http://www.openfst.org/twiki/pub/FST/FstDownload/openfst-1.6.3.tar.gz
+    tar -xzvf openfst-1.6.3.tar.gz
+    echo -e "\n"
+fi
+
+if [ ! -d ThreadPool ]; then
+    git clone https://github.com/progschj/ThreadPool.git
+    echo -e "\n"
+fi
+
+echo "Install decoders ..."
+python setup.py install --num_processes 4