Merge branch 'develop' of https://github.com/paddlepaddle/paddle into memory_design

.travis.yml

+group: deprecated-2017Q2
 language: cpp
 cache:
   directories:

paddle/gserver/gradientmachines/NeuralNetwork.cpp

@@ -241,11 +241,14 @@ void NeuralNetwork::forward(const std::vector<Argument>& inArgs,
     dataLayers_[i]->setData(inArgs[i]);
   }
 
+  gLayerStackTrace.set_stage(true);
+
   {
     for (auto& layer : layers_) {
       REGISTER_TIMER_INFO("ForwardTimer", layer->getName().c_str());
       gLayerStackTrace.push(layer->getName());
       layer->forward(passType);
+      gLayerStackTrace.pop(layer->getName());
     }
   }
 
@@ -254,9 +257,6 @@ void NeuralNetwork::forward(const std::vector<Argument>& inArgs,
   for (auto& layer : outputLayers_) {
     outArgs->push_back(layer->getOutput());
   }
-  if (passType == PASS_TEST) {
-    gLayerStackTrace.clear();
-  }
 }
 
 void NeuralNetwork::resetState() {
@@ -283,9 +283,10 @@ void NeuralNetwork::getState(MachineState& machineState) {
 }
 
 void NeuralNetwork::backward(const UpdateCallback& callback) {
-  gLayerStackTrace.pop("");  // tell layer trace is during backward.
+  gLayerStackTrace.set_stage(false);
   FOR_EACH_R(layer, layers_) {
     REGISTER_TIMER_INFO("BackwardTimer", (*layer)->getName().c_str());
+    gLayerStackTrace.push((*layer)->getName());
     if ((*layer)->needGradient()) {
       (*layer)->backward(callback);
     }
@@ -320,7 +321,7 @@ public:
     }
   }
 
-  virtual void eval(const NeuralNetwork& nn) {
+  virtual void eval(const NeuralNetwork& nn) override {
     for (auto& evaluator : evaluators_) {
       evaluator->eval(nn);
     }
@@ -395,6 +396,30 @@ private:
   }
 };
 
+class SubnetEvaluator : public CombinedEvaluator {
+public:
+  SubnetEvaluator(const std::string& layerName,
+                  std::unique_ptr<Evaluator>&& evaluator)
+      : layerName_(layerName) {
+    addEvaluator(std::move(evaluator));
+  }
+  virtual void eval(const NeuralNetwork& nn) override {
+    const LayerPtr& layer = nn.getLayer(layerName_);
+    CHECK(layer) << "Nonexisted layer: " << layerName_ << " in submodel "
+                 << nn.getName();
+    bool accessed = false;
+    layer->accessSubNetwork([this, &accessed](NeuralNetwork& subnet) {
+      subnet.eval(evaluators_[0].get());
+      accessed = true;
+    });
+    CHECK(accessed) << "There is no subnetwork for layer " << layerName_
+                    << " in submodel " << nn.getName();
+  }
+
+protected:
+  std::string layerName_;
+};
+
 Evaluator* NeuralNetwork::makeEvaluator() const {
   CombinedEvaluator* combinedEvaluator = new CombinedEvaluator();
   auto subModelConfig = std::find_if(config_.sub_models().begin(),
@@ -421,6 +446,15 @@ Evaluator* NeuralNetwork::makeEvaluator() const {
         combinedEvaluator->addEvaluator(std::move(evaluator));
       }
     }
+    for (auto& layer : layers_) {
+      layer->accessSubNetwork(
+          [layer, combinedEvaluator](NeuralNetwork& subnet) {
+            std::unique_ptr<Evaluator> subEvaluator(new SubnetEvaluator(
+                layer->getName(),
+                std::unique_ptr<Evaluator>(subnet.makeEvaluator())));
+            combinedEvaluator->addEvaluator(std::move(subEvaluator));
+          });
+    }
   } else {
     for (const EvaluatorConfig& evalConfig : config_.evaluators()) {
       std::unique_ptr<Evaluator> evaluator(Evaluator::create(evalConfig));

paddle/gserver/gradientmachines/NeuralNetwork.h

@@ -129,6 +129,8 @@ public:
   static NeuralNetwork* newNeuralNetwork(const std::string& name = "",
                                          NeuralNetwork* rootNetwork = nullptr);
 
+  const std::string& getName() const { return subModelName_; }
+
 protected:
   /**
    * The constructor of NeuralNetwork.

paddle/gserver/gradientmachines/RecurrentGradientMachine.cpp

@@ -208,6 +208,7 @@ void RecurrentGradientMachine::init(
                    });
   CHECK(subModelConfig != config.sub_models().end());
   reversed_ = subModelConfig->reversed();
+  generating_ = subModelConfig->has_generator();
 
   inFrameLines_.resize(subModelConfig->in_links_size());
   for (size_t i = 0; i < inFrameLines_.size(); ++i) {
@@ -287,10 +288,6 @@ void RecurrentGradientMachine::init(
       parameterIds_.push_back(para->getID());
     }
   }
-
-  if (subModelConfig->evaluator_names_size() > 0) {
-    evaluator_.reset(frames_[0]->makeEvaluator());
-  }
 }
 
 void RecurrentGradientMachine::resizeOrCreateFrames(int numFrames) {
@@ -538,7 +535,7 @@ void RecurrentGradientMachine::forward(const std::vector<Argument>& inArgs,
      The outputs are outFramesLines_[i].agentLayer
    */
 
-  if (inFrameLines_.empty() && passType == PASS_TEST) {
+  if (generating_) {
     generateSequence();
     return;
   }  // else forward..
@@ -561,14 +558,14 @@ void RecurrentGradientMachine::forward(const std::vector<Argument>& inArgs,
     std::vector<Argument> outArgs;
     frames_[i]->forward(inArgs, &outArgs, passType);
   }
-  if (evaluator_ && passType == PASS_TEST) {
-    this->eval(evaluator_.get());
-  }
 
   reorganizeOutput(passType);
 }
 
 void RecurrentGradientMachine::backward(const UpdateCallback& callback) {
+  if (generating_) {
+    return;
+  }
   REGISTER_TIMER_INFO("RecurrentBwTime", "RecurrentBwTime");
   AsyncGpuBlock asyncGpuBlock;
   for (int i = maxSequenceLength_ - 1; i >= 0; --i) {
@@ -577,11 +574,6 @@ void RecurrentGradientMachine::backward(const UpdateCallback& callback) {
   for (auto& memoryFrameLine : memoryFrameLines_) {
     memoryFrameLine.bootLayer->backward(nullptr);
   }
-
-  // call printers here so the gradient can be printed
-  if (evaluator_) {
-    this->eval(evaluator_.get());
-  }
 }
 
 void RecurrentGradientMachine::forwardBackward(
@@ -595,9 +587,9 @@ void RecurrentGradientMachine::forwardBackward(
 void RecurrentGradientMachine::eval(Evaluator* evaluator) const {
   // call printers frame by frame
   for (int i = 0; i < maxSequenceLength_; ++i) {
-    LOG(INFO) << "Recurrent Layer Group eval frame " << i << " begin";
+    VLOG(2) << "Recurrent Layer Group eval frame " << i << " begin";
     evaluator->eval(*(frames_[i].get()));
-    LOG(INFO) << "Recurrent Layer Group eval frame " << i << " end";
+    VLOG(2) << "Recurrent Layer Group eval frame " << i << " end";
   }
 }
 
@@ -1093,10 +1085,6 @@ void RecurrentGradientMachine::oneWaySearch(size_t batchSize) {
 
     copyDataOutlinkFrame(machineCur);
 
-    // call value printer
-    if (evaluator_) {
-      evaluator_->eval(*(frames_[machineCur].get()));
-    }
     // check eos
     const IVectorPtr& eosVec =
         eosFrameLine_->layers[machineCur]->getOutput().ids;
@@ -1321,11 +1309,10 @@ void RecurrentGradientMachine::fillGenOutputs() {
 
   batchMachineIdVec_.clear();
   generator_.ids.clear();
+  int* starts = generator_.outArg.sequenceStartPositions->getMutableData(false);
+  starts[0] = 0;
   if (numResults > 1) {
     real* probs = generator_.outArg.in->getData();
-    int* starts =
-        generator_.outArg.sequenceStartPositions->getMutableData(false);
-    starts[0] = 0;
     for (size_t i = 0; i < finalPaths_.size(); ++i) {
       for (size_t j = 0; j < finalPaths_[i].size(); ++j) {
         Path& path = finalPaths_[i][j];
@@ -1348,7 +1335,10 @@ void RecurrentGradientMachine::fillGenOutputs() {
   } else {
     for (size_t i = 0; i < finalPaths_.size(); ++i) {
       CHECK(!finalPaths_[i].empty());
-      generator_.ids = finalPaths_[i][0].ids;
+      generator_.ids.insert(generator_.ids.begin(),
+                            finalPaths_[i][0].ids.begin(),
+                            finalPaths_[i][0].ids.end());
+      starts[i + 1] = starts[i] + finalPaths_[i][0].ids.size();
     }
   }
 }

paddle/gserver/gradientmachines/RecurrentGradientMachine.h

@@ -414,6 +414,7 @@ protected:
     std::vector<int> ids;  // store generated sequences
     Argument outArg;       // final output argument
   };
+  bool generating_;
   Generator generator_;
 
   std::vector<std::unique_ptr<NeuralNetwork>> frames_;
@@ -428,8 +429,6 @@ protected:
   std::vector<int>
       parameterIds_;  // parameters actually used by this Layer Group
 
-  std::unique_ptr<Evaluator> evaluator_;  // frame printers in this layer group
-
   // store final argument of outFrameLines_
   std::vector<Argument> dataArgs_;
   // store each frame's output argument of outFrameLines_

paddle/gserver/layers/AgentLayer.cpp

@@ -109,6 +109,40 @@ void GatherAgentLayer::forwardValue(PassType passType) {
   }
 }
 
+namespace {
+
+// dest[index[i]] <- src[i] for each i
+void copyElements(const IVector& srcVec,
+                  const IVector& indexVec,
+                  IVector& destVec) {
+  const int* src = srcVec.getData();
+  const int* index = indexVec.getData();
+  int* dest = destVec.getData();
+  int len = indexVec.getSize();
+  CHECK_EQ(srcVec.getSize(), indexVec.getSize());
+  for (int i = 0; i < len; ++i) {
+    dest[index[i]] = src[i];
+  }
+}
+}
+
+void GatherAgentLayer::forwardIds(PassType passType) {
+  IVectorPtr realId = realLayers_[0]->getOutputLabel();
+  if (!realId) return;
+
+  IVector::resizeOrCreate(output_.ids, allIds_->getSize(), useGpu_);
+  IVectorPtr outId = output_.ids;
+  idsVec_.resize(idIndex_.size());
+
+  for (size_t i = 0; i < realLayers_.size(); ++i) {
+    const IVectorPtr& realId = realLayers_[i]->getOutputLabel();
+    idsVec_[i] = IVector::create(allIds_->getData() + idIndex_[i],
+                                 /* size */ realId->getSize(),
+                                 useGpu_);
+    execViaCpu(&copyElements, *realId, *idsVec_[i], *outId);
+  }
+}
+
 void GatherAgentLayer::backward(const UpdateCallback& callback) {
   (void)callback;
   const MatrixPtr& outputGrad = getOutputGrad();
@@ -136,23 +170,22 @@ void ScatterAgentLayer::forward(PassType passType) {
   CHECK_EQ(realLayer_->getDeviceId(), this->getDeviceId());
 
   int width = this->getSize();
-  if (realOutArg_.hasSeq()) {
-    forwardSequence(passType);
-  } else if (realOutArg_.value || realOutArg_.ids) {
-    output_.subArgFrom(
-        realOutArg_, /* offset */ idIndex_, idSize_, width, useGpu_);
-  } else {  // used in generation
-    if (realLayer_->getOutput().ids) {
-      IVector::resizeOrCreate(output_.ids, ids_->getSize(), useGpu_);
-      output_.ids->selectFrom(*realLayer_->getOutput().ids, *ids_);
-    }
-    if (realLayer_->getOutput().value) {
-      int height = ids_->getSize();
-      resetOutput(height, width);
-
-      const MatrixPtr& outV = getOutputValue();
-      const MatrixPtr& realV = realLayer_->getOutputValue();
-      outV->selectRows(*realV, *ids_);
+  if (selectionMode_) {
+    forwardWithSelection(passType);
+  } else {
+    if (realOutArg_.hasSeq()) {
+      output_.subArgFrom(realOutArg_,
+                         /* offset */ idIndex_,
+                         idSize_,
+                         width,
+                         useGpu_,
+                         /* trans */ false,
+                         /* seqFlag */ true,
+                         /* seqStart */ seqStartPosIndex_,
+                         /* seqSize */ numSequences_);
+    } else {
+      output_.subArgFrom(
+          realOutArg_, /* offset */ idIndex_, idSize_, width, useGpu_);
     }
   }
 }
@@ -160,6 +193,8 @@ void ScatterAgentLayer::forward(PassType passType) {
 void ScatterAgentLayer::backward(const UpdateCallback& callback) {
   (void)callback;
 
+  CHECK(!selectionMode_);
+
   const MatrixPtr& outputGrad = realOutArg_.grad;
   const MatrixPtr& realGrad = realLayer_->getOutputGrad();
   if (realGrad) {
@@ -174,42 +209,7 @@ void ScatterAgentLayer::backward(const UpdateCallback& callback) {
 REGISTER_LAYER(gather_agent, GatherAgentLayer);
 REGISTER_LAYER(scatter_agent, ScatterAgentLayer);
 
-void GatherAgentLayer::forwardIds(PassType passType) {
-  int height = 0;
-  IVectorPtr idReal = realLayers_[0]->getOutputLabel();
-
-  if (!idReal) return;
-
-  if (output_.subSequenceStartPositions) {
-    int* starts = output_.subSequenceStartPositions->getMutableData(false);
-    // Gather generator.idsVec
-    // if is beam search generation result. Get first result.
-    if (idReal->getData()[idReal->getSize() - 1] == -1) {
-      for (size_t i = 0; i < realLayers_.size(); ++i) {
-        // The first element stores first result size
-        idReal = realLayers_[i]->getOutputLabel();
-        idReal->subVecFrom(*idReal, 1, idReal->getData()[0]);
-      }
-    }
-    for (size_t i = 0; i < realLayers_.size(); ++i) {
-      CHECK(realLayers_[i]->getOutputLabel());
-      starts[i] = height;
-      height += realLayers_[i]->getOutputLabel()->getSize();
-    }
-    starts[realLayers_.size()] = height;
-    output_.sequenceStartPositions->getMutableData(false)[1] = height;
-
-    IVector::resizeOrCreate(output_.ids, height, false);
-    for (size_t i = 0; i < realLayers_.size(); ++i) {
-      output_.ids->subVec(starts[i], starts[i + 1] - starts[i])
-          ->copyFrom(*realLayers_[i]->getOutputLabel());
-    }
-  } else {
-    LOG(FATAL) << "Not implemented";
-  }
-}
-
-void ScatterAgentLayer::forwardSequence(PassType passType) {
+void ScatterAgentLayer::forwardWithSelection(PassType passType) {
   Layer::forward(passType);
   CHECK_EQ(realLayer_->getDeviceId(), this->getDeviceId());
 
@@ -220,17 +220,19 @@ void ScatterAgentLayer::forwardSequence(PassType passType) {
   AsyncGpuBlock asyncGpuBlock;
   REGISTER_TIMER_INFO("SequenceAgentLayerForward", getName().c_str());
 
-  if (realOutArg_.value || realOutArg_.ids) {
-    CHECK(realOutArg_.sequenceStartPositions);
-    output_.subArgFrom(realOutArg_,
-                       /* offset */ idIndex_,
-                       idSize_,
-                       width,
-                       useGpu_,
-                       /* trans */ false,
-                       /* seqFlag */ true,
-                       /* seqStart */ seqStartPosIndex_,
-                       /* seqSize */ numSequences_);
+  if (!input.hasSeq()) {
+    if (realLayer_->getOutput().ids) {
+      IVector::resizeOrCreate(output_.ids, ids_->getSize(), useGpu_);
+      output_.ids->selectFrom(*realLayer_->getOutput().ids, *ids_);
+    }
+    if (realLayer_->getOutput().value) {
+      int height = ids_->getSize();
+      resetOutput(height, width);
+
+      const MatrixPtr& outV = getOutputValue();
+      const MatrixPtr& realV = realLayer_->getOutputValue();
+      outV->selectRows(*realV, *ids_);
+    }
   } else {
     // Putting the generation logic here is really an ugly hack!
     // used in generation

paddle/gserver/layers/AgentLayer.h

@@ -110,6 +110,9 @@ protected:
   // of real layer.
   ICpuGpuVectorPtr inputStartPos_;
 
+  // true for setRealLayer, false for setRealLayerAndOutput
+  bool selectionMode_;
+
 public:
   explicit ScatterAgentLayer(const LayerConfig& config) : Layer(config) {}
 
@@ -137,6 +140,7 @@ public:
     } else {
       cpuIds_ = ids_;
     }
+    selectionMode_ = true;
   }
 
   // set real layer and output, [idIndex, idIndex + idSize) of *ids*
@@ -153,6 +157,7 @@ public:
     idIndex_ = idIndex;
     idSize_ = idSize;
     handleBackward_ = handleBackward;
+    selectionMode_ = false;
   }
 
   void setSequenceStartPositions(const ICpuGpuVectorPtr& sequenceStartPositions,
@@ -166,7 +171,7 @@ public:
   void forward(PassType passType) override;
   void backward(const UpdateCallback& callback) override;
 
-  void forwardSequence(PassType passType);
+  void forwardWithSelection(PassType passType);
 };
 
 }  // namespace paddle

paddle/trainer/tests/sample_trainer_nest_rnn_gen.conf

@@ -35,7 +35,7 @@ def outer_step(dummy_data):
                                  embedding_size=num_words)]
 
     def inner_step(dummy_memory, predict_word):
-        
+
         # simplified RNN for testing
         with mixed_layer(size=num_words) as layer:
             layer += full_matrix_projection(input=predict_word,
@@ -46,15 +46,15 @@ def outer_step(dummy_data):
                                                 param_attr=ParamAttr(name="wordvec"))
 
         return out
-    
+
     beam_gen = beam_search(name="rnn_gen",
                            step=inner_step,
                            input=gen_inputs,
                            bos_id=0,
                            eos_id=num_words-1,
                            beam_size=2 if beam_flag else 1,
-                           num_results_per_sample=2 if beam_flag else 1,
-                           max_length=10) 
+                           num_results_per_sample=1,
+                           max_length=10)
     return beam_gen
 
 beam_gen_concat = recurrent_group(name="rnn_gen_concat",

paddle/trainer/tests/sample_trainer_rnn_gen.conf

@@ -33,7 +33,7 @@ gen_inputs = [StaticInput(input=dummy_data, size=2),
                              embedding_size=num_words)]
 
 def step(dummy_memory, predict_word):
-    
+
     # simplified RNN for testing
     with mixed_layer(size=num_words) as layer:
         layer += full_matrix_projection(input=predict_word,
@@ -44,7 +44,7 @@ def step(dummy_memory, predict_word):
                                             param_attr=ParamAttr(name="wordvec"))
 
     return out
-    
+
 beam_gen = beam_search(name="rnn_gen",
                        step=step,
                        input=gen_inputs,
@@ -52,7 +52,7 @@ beam_gen = beam_search(name="rnn_gen",
                        eos_id=num_words-1,
                        beam_size=2 if beam_flag else 1,
                        num_results_per_sample=2 if beam_flag else 1,
-                       max_length=10) 
+                       max_length=10)
 
 seqtext_printer_evaluator(input=beam_gen,
                           id_input=sent_id,

paddle/utils/CustomStackTrace.h

@@ -55,13 +55,17 @@ public:
    *        Else, just set status to popping.
    */
   void pop(const T& item) {
-    pushing() = false;
     auto& s = this->stack();
     if (item == s.top()) {
       s.pop();
     }
   }
 
+  /**
+   * @brief Indicate whether we are at forward or backward stage of computation
+   */
+  void set_stage(bool isForward) { pushing() = isForward; }
+
   /**
    * @brief clear current thread stack.
    */

paddle/utils/tests/test_CustomStackTrace.cpp

@@ -72,7 +72,6 @@ TEST(CustomStackTrace, normalTrain) {
       for (size_t i = 0; i < layerSize; ++i) {
         tracer.push("layer_" + paddle::str::to_string(i));
       }
-      tracer.pop("");
       for (size_t i = 0; i < layerSize; ++i) {
         tracer.pop("layer_" + paddle::str::to_string(layerSize - 1 - i));
       }

python/paddle/v2/layer.py

@@ -45,12 +45,12 @@ __all__ = ['data', 'parse_network']
 def __need_to_keep__(name):
     return name in [
         'StaticInput', 'SubsequenceInput', 'GeneratedInput', 'LayerType',
-        'layer_support'
+        'layer_support', 'BaseGeneratedInput'
     ]
 
 
 def __need_to_wrap__(name):
-    return name not in ['AggregateLevel', 'ExpandLevel']
+    return name not in ['AggregateLevel', 'ExpandLevel', 'BaseGeneratedInput']
 
 
 def __convert_name__(inname):
@@ -199,6 +199,15 @@ def __get_used_submodels__(layer_names):
     return submodel_names
 
 
+def __get_submodel_data_out_links__():
+    data_links = set()
+    for submodel in cp.g_config.model_config.sub_models:
+        for link in submodel.out_links:
+            if cp.g_layer_map[link.link_name].type == 'data':
+                data_links.add(link.link_name)
+    return data_links
+
+
 def __get_used_evaluators__(layer_names):
     evaluator_names = set()
     for e in cp.g_config.model_config.evaluators:
@@ -264,6 +273,7 @@ def parse_network(output_layers, extra_layers=None):
     submodel_names = __get_used_submodels__(layer_names)
     submodel_names.add('root')
     evaluator_names = __get_used_evaluators__(layer_names)
+    data_out_links = __get_submodel_data_out_links__()
     input_layer_names = set()
     output_layer_names = set()
 
@@ -279,7 +289,7 @@ def parse_network(output_layers, extra_layers=None):
             continue
         model_config.layers.extend([l])
         if l.type == 'data':
-            if l.name in model_config.output_layer_names:
+            if l.name in data_out_links:
                 """
                 In text generation, the outlink to save the generated word
                 indices is a data_layer defined in recurrent_group. This