[Fix Patch Error] Fix patch error in cmake (#53321)

cmake/external/eigen.cmake

@@ -51,9 +51,10 @@ if(CMAKE_COMPILER_IS_GNUCC)
   if(GCC_VERSION GREATER_EQUAL "12.0")
     file(TO_NATIVE_PATH ${PADDLE_SOURCE_DIR}/patches/eigen/Complex.h.patch
          complex_header)
+    # See: [Why calling some `git` commands before `patch`?]
     set(EIGEN_PATCH_COMMAND
-        patch -Nd ${EIGEN_SOURCE_DIR}/Eigen/src/Core/arch/SSE/ <
-        ${complex_header})
+        git checkout -- . && git checkout ${EIGEN_TAG} && patch -Nd
+        ${EIGEN_SOURCE_DIR}/Eigen/src/Core/arch/SSE/ < ${complex_header})
   endif()
 endif()
 

cmake/external/gloo.cmake

@@ -37,8 +37,9 @@ if(WITH_GPU)
                                                   VERSION_GREATER 12.0)
     file(TO_NATIVE_PATH ${PADDLE_SOURCE_DIR}/patches/gloo/device.cc.patch
          native_dst)
-    set(GLOO_PATCH_COMMAND patch -d ${GLOO_SOURCE_DIR}/gloo/transport/tcp <
-                           ${native_dst})
+    set(GLOO_PATCH_COMMAND
+        git checkout -- . && git checkout ${GLOO_TAG} &&patch -Nd
+        ${GLOO_SOURCE_DIR}/gloo/transport/tcp < ${native_dst})
   endif()
 endif()
 
@@ -54,9 +55,11 @@ if(CMAKE_COMPILER_IS_GNUCC)
          native_dst)
     file(TO_NATIVE_PATH ${PADDLE_SOURCE_DIR}/patches/gloo/types.h.patch
          types_header)
+    # See: [Why calling some `git` commands before `patch`?]
     set(GLOO_PATCH_COMMAND
-        patch -Nd ${GLOO_SOURCE_DIR}/gloo/transport/tcp < ${native_dst} &&
-        patch -Nd ${GLOO_SOURCE_DIR}/gloo/ < ${types_header})
+        git checkout -- . && git checkout ${GLOO_TAG} && patch -Nd
+        ${GLOO_SOURCE_DIR}/gloo/transport/tcp < ${native_dst} && patch -Nd
+        ${GLOO_SOURCE_DIR}/gloo/ < ${types_header})
   endif()
 endif()
 include_directories(${GLOO_INCLUDE_DIR})

cmake/external/gtest.cmake

@@ -66,8 +66,10 @@ endif()
 if(NOT WIN32 AND ${CMAKE_CXX_COMPILER_VERSION} VERSION_GREATER 12.0)
   file(TO_NATIVE_PATH
        ${PADDLE_SOURCE_DIR}/patches/gtest/gtest-death-test.cc.patch native_src)
-  set(GTEST_PATCH_COMMAND patch -Nd ${GTEST_SOURCE_DIR}/googletest/src <
-                          ${native_src})
+  # See: [Why calling some `git` commands before `patch`?]
+  set(GTEST_PATCH_COMMAND
+      git checkout -- . && git checkout ${GTEST_TAG} && patch -Nd
+      ${GTEST_SOURCE_DIR}/googletest/src < ${native_src})
 endif()
 if(WIN32)
   ExternalProject_Add(

cmake/external/pybind11.cmake

@@ -25,8 +25,13 @@ set(PYBIND_PATCH_COMMAND "")
 if(NOT WIN32)
   file(TO_NATIVE_PATH ${PADDLE_SOURCE_DIR}/patches/pybind/cast.h.patch
        native_dst)
-  set(PYBIND_PATCH_COMMAND patch -d ${PYBIND_INCLUDE_DIR}/pybind11 <
-                           ${native_dst})
+  # Note: [Why calling some `git` commands before `patch`?]
+  # Paddle's CI uses cache to accelarate the make process. However, error might raise when patch codes in two scenarios:
+  # 1. Patch to the wrong version: the tag version of CI's cache falls behind PYBIND_TAG, use `git checkout ${PYBIND_TAG}` to solve this.
+  # 2. Patch twice: the tag version of cache == PYBIND_TAG, but patch has already applied to cache.
+  set(PYBIND_PATCH_COMMAND
+      git checkout -- . && git checkout ${PYBIND_TAG} && patch -Nd
+      ${PYBIND_INCLUDE_DIR}/pybind11 < ${native_dst})
 endif()
 
 ExternalProject_Add(