Merge pull request #1 from baidu/master

Update from the original

paddle/gserver/gradientmachines/NeuralNetwork.cpp

@@ -277,6 +277,7 @@ void NeuralNetwork::getState(MachineState& machineState) {
 }
 
 void NeuralNetwork::backward(const UpdateCallback& callback) {
+  gLayerStackTrace.pop("");  // tell layer trace is during backward.
   FOR_EACH_R(layer, layers_) {
     REGISTER_TIMER_INFO("BackwardTimer", (*layer)->getName().c_str());
     if ((*layer)->needGradient()) {

paddle/gserver/layers/CudnnBatchNormLayer.cpp

@@ -114,27 +114,30 @@ void CudnnBatchNormLayer::backward(const UpdateCallback& callback) {
   } else {
     create(tmpBiasGrad_, 1, channels_, &betaGrad);
   }
-#if CUDNN_VERSION < 5000
+
   // because of the different api of cudnn v4 and v5.
-  if (weight_->getWGrad()) {
-    create(tmpWGrad_, 1, channels_, &gammaGrad);
-  }
-  if (biases_ && biases_->getWGrad()) {
-    create(tmpBiasGrad_, 1, channels_, &betaGrad);
+  if (hl_get_cudnn_lib_version() < 5000) {
+    if (weight_->getWGrad()) {
+      create(tmpWGrad_, 1, channels_, &gammaGrad);
+    }
+    if (biases_ && biases_->getWGrad()) {
+      create(tmpBiasGrad_, 1, channels_, &betaGrad);
+    }
   }
-#endif
+
   hl_batch_norm_backward(ioDesc_, input, ioDesc_, outGrad,
                          ioDesc_, inGrad, bnParamDesc_,
                          gamma, gammaGrad, betaGrad,
                          EPS, savedMean, savedInvVar);
 
-#if CUDNN_VERSION < 5000
   // because of the different api of cudnn v4 and v5.
-  if (weight_->getWGrad() && biases_->getWGrad()) {
-    weight_->getWGrad()->add(*tmpWGrad_);
-    biases_->getWGrad()->add(*tmpBiasGrad_);
+  if (hl_get_cudnn_lib_version() < 5000) {
+    if (weight_->getWGrad() && biases_->getWGrad()) {
+      weight_->getWGrad()->add(*tmpWGrad_);
+      biases_->getWGrad()->add(*tmpBiasGrad_);
+    }
   }
-#endif
+
   {
     REGISTER_TIMER_INFO("WeightUpdate", getName().c_str());
     biases_->getParameterPtr()->incUpdate(callback);

paddle/utils/CustomStackTrace.cpp

@@ -14,9 +14,44 @@ limitations under the License. */
 
 
 #include "CustomStackTrace.h"
+#include "CommandLineParser.h"
+#include <iostream>
+
+P_DEFINE_bool(layer_stack_error_only_current_thread,
+    true,
+    "Dump current thread or whole process layer stack when signal error "
+    "occurred. true means only dump current thread layer stack");
 
 namespace paddle {
 
 CustomStackTrace<std::string> gLayerStackTrace;
 
+static std::mutex gLayerStackTraceMtx;
+void installLayerStackTracer() {
+  logging::installFailureWriter([](const char* data, int sz) {
+    std::lock_guard<std::mutex> guard(gLayerStackTraceMtx);
+    if (!gLayerStackTrace.empty()) {
+      size_t curTid = -1UL;
+      std::hash<std::thread::id> hasher;
+      gLayerStackTrace.dump([&curTid, &hasher](std::thread::id tid,
+                            bool* isForwarding,
+                            const std::string& layerName) {
+        if (curTid != hasher(tid)) {
+          if (curTid != -1UL) {
+            std::cerr << std::endl;
+          }
+          curTid = hasher(tid);
+          std::cerr << "Thread [" << tid << "] ";
+          if (isForwarding) {
+            std::cerr << (*isForwarding ? "Forwarding ": "Backwarding ");
+          }
+        }
+        std::cerr << layerName << ", ";
+      }, FLAGS_layer_stack_error_only_current_thread);
+      std::cerr << std::endl;
+    }
+    std::cerr.write(data, sz);
+  });
+}
+
 }  // namespace paddle

paddle/utils/CustomStackTrace.h

@@ -15,6 +15,9 @@ limitations under the License. */
 #pragma once
 
 #include <stack>
+#include <thread>
+#include <unordered_map>
+#include <functional>
 
 #include "ThreadLocal.h"
 
@@ -29,25 +32,18 @@ namespace paddle {
  * @code{.cpp}
  * 
  * paddle::CustomStackTrace<std::string> stack;
- * PASS_TEST=0;
  * for (auto& layer : layers){
  *   stack.push(layer->getName());
- *   layer->forward(passType);
+ *   layer->forward();
  * }
- * for (auto& layer : layers){
+ *
+ * stack.pop("");  // mark under pop stage.
+ *
+ * for (auto it = layers.rbegin(); it != layers.rend(); ++it){
+ *   auto& layer = *it;
  *   layer->backward(passType);
  *   stack.pop(layer->getName());
  * }
- * 
- * if(passType == PASS_TEST) {
- *   stack.clear();
- * }
- * else {
- *   stack.dump([](const std::string& layername){
- *     LOG(INFO) << "LayerName: " << layername;
- *   })
- * }
- * 
  *
  * @endcode
  */
@@ -55,45 +51,141 @@ template <typename T>
 class CustomStackTrace{
 public:
   /**
-   * @brief Pop out an item from the top of the stack. For safety the item 
-   * will be poped should equal to ip.
+   * @brief Pop out an item from the top of the stack if item == top.
+   *        Else, just set status to popping.
    */
-  void pop(const T& ip) {
-    auto& p = *logstack_;
-    CHECK_EQ(ip, p.top());
-    p.pop();
+  void pop(const T& item) {
+    pushing() = false;
+    auto& s = this->stack();
+    if (item == s.top()) {
+      s.pop();
+    }
   }
+
   /**
-   * @brief Empty the stack by sequence from top to button.
-   * @param[in] callback A function deal with each item while dumping.
-   * It must have and only have a in parameter which is the stack item.
+   * @brief clear current thread stack.
    */
-  template <typename Callback>
-  void dump(Callback callback) {
-    auto& p = *logstack_;
-    while (!p.empty()) {
-      callback(p.top());
-      p.pop();
+  void clear() {
+    auto& s = stack();
+    while (!s.empty()) {
+      s.pop();
     }
   }
+
   /**
-   * @brief Only empty the stack.
+   * @brief return true if all thread's stack is empty.
+   * @return true if empty
    */
-  void clear() {
-    dump([](const T& ip){});
+  bool empty() const {
+    std::lock_guard<std::mutex> g(this->mtx_);
+    for (auto p : this->stackBuffers_) {
+      std::stack<T>& s = *p.second;
+      if (!s.empty()) {
+        return false;
+      }
+    }
+    return true;
+  }
+
+
+  /**
+   * @brief DumpCallback Type. It will be invoked many times by dump method.
+   *
+   * The first parameter is stack thread id.
+   * The second parameter is the last action of stack is push or not.
+   * The third parameter is the item in stack.
+   */
+  typedef std::function<void(const std::thread::id& /*threadId*/,
+                              bool* /*isPushing*/,
+                              const T& /*item*/)> DumpCallback;
+
+  /**
+   * Dump all thread stack, and all stack will be cleared.
+   */
+  void dump(const DumpCallback& callback, bool onlyCurrentThread = false) {
+    std::lock_guard<std::mutex> g(this->mtx_);
+    for (auto p : this->stackBuffers_) {
+      std::thread::id tid = p.first;
+      if (onlyCurrentThread && tid != std::this_thread::get_id()) {
+        continue;
+      }
+      std::stack<T>& s = *p.second;
+      bool* isPush = nullptr;
+      auto it = this->pushingBuffers_.find(tid);
+      if (it != this->pushingBuffers_.end()) {
+        isPush = it->second;
+      }
+
+      while (!s.empty()) {
+        callback(tid, isPush, s.top());
+        s.pop();
+      }
+    }
   }
+
   /**
-   * @brief Push item ip to the top of the stack.
+   * @brief Push item to current thread stack.
    */
-  void push(const T& ip) {
-    auto& p = *logstack_;
-    p.push(ip);
+  void push(const T& item) {
+    pushing() = true;
+    auto& p = this->stack();
+    p.push(item);
   }
 
 private:
-  ThreadLocalD<std::stack<T> > logstack_;
+  /**
+   * Get thread local attribute, and save them into a map (threadId => TYPE*)
+   *
+   * @tparam TYPE thread local attribute type.
+   * @param threadLocal Thread Local object.
+   * @param buffers a map from threadId to TYPE*
+   */
+  template <typename TYPE>
+  inline TYPE& getThreadLocal(
+      ThreadLocal<TYPE>& threadLocal,
+      std::unordered_map<std::thread::id, TYPE*>& buffers) {
+    TYPE* retv = threadLocal.get(false);
+    if (retv) {
+      return *retv;
+    } else {
+      std::lock_guard<std::mutex> guard(this->mtx_);
+      retv = threadLocal.get();
+      auto id = std::this_thread::get_id();
+      buffers.insert({id, retv});
+      return *retv;
+    }
+  }
+
+  /**
+   * @brief Get thread local stack reference.
+   */
+  std::stack<T>& stack() {
+    return this->getThreadLocal(this->logStack_,
+                                this->stackBuffers_);
+  }
+
+  /**
+   * @brief Get thread local pushing flag.
+   */
+  bool& pushing() {
+    return this->getThreadLocal(this->isPushing_,
+                                this->pushingBuffers_);
+  }
+
+private:
+  mutable std::mutex mtx_;
+
+  std::unordered_map<std::thread::id, std::stack<T>* > stackBuffers_;
+  std::unordered_map<std::thread::id, bool* > pushingBuffers_;
+  ThreadLocal<bool> isPushing_;
+  ThreadLocal<std::stack<T> > logStack_;
 };
 
 extern CustomStackTrace<std::string> gLayerStackTrace;
 
+/**
+ * @brief Install a failure handler to print layer stack when error.
+ */
+extern void installLayerStackTracer();
+
 }  // namespace paddle

paddle/utils/Util.cpp

@@ -129,13 +129,7 @@ void runInitFunctions() {
 
 void initMain(int argc, char** argv) {
   initializeLogging(argc, argv);
-  logging::installFailureWriter([](const char* data, int sz) {
-    std::cerr << "Current Layer forward/backward stack is " << std::endl;
-    gLayerStackTrace.dump([](const std::string& layername){
-      std::cerr << "LayerName: " << layername << std::endl;
-    });
-    std::cerr.write(data, sz);
-  });
+  installLayerStackTracer();
   std::string line;
   for (int i = 0; i < argc; ++i) {
     line += argv[i];

paddle/utils/tests/CMakeLists.txt

@@ -2,3 +2,13 @@ add_simple_unittest(test_CommandLineParser)
 add_simple_unittest(test_Logging)
 add_simple_unittest(test_Thread)
 add_simple_unittest(test_StringUtils)
+add_simple_unittest(test_CustomStackTrace)
+
+add_executable(
+    test_CustomStackTracePrint
+    test_CustomStackTracePrint.cpp
+)
+link_paddle_exe(test_CustomStackTracePrint)
+add_test(NAME test_CustomStackTracePrint
+    COMMAND ${PROJ_ROOT}/paddle/utils/tests/test_CustomStackTracePrint.sh
+    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})

paddle/utils/tests/test_CustomStackTrace.cpp

+/* Copyright (c) 2016 Baidu, Inc. All Rights Reserve.
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License. */
+
+#include <gtest/gtest.h>
+#include <chrono>
+
+#include "paddle/utils/CustomStackTrace.h"
+#include "paddle/utils/CommandLineParser.h"
+#include "paddle/utils/Util.h"
+#include "paddle/utils/Locks.h"
+
+P_DEFINE_int32(test_thread_num, 10, "testing thread number");
+
+void testNormalImpl(const std::function<void(
+                      paddle::CustomStackTrace<std::string>&,
+                      size_t, size_t,
+                      paddle::ThreadBarrier&,
+                      paddle::ThreadBarrier&)>& callback) {
+  paddle::CustomStackTrace<std::string> tracer;
+  paddle::ThreadBarrier doneBarrier(FLAGS_test_thread_num + 1);
+  paddle::ThreadBarrier startBarrier(FLAGS_test_thread_num + 1);
+  constexpr size_t countDown = 10;
+  constexpr size_t layerSize = 1000;
+  std::vector<std::unique_ptr<std::thread>> threads;
+  threads.reserve(FLAGS_test_thread_num);
+
+  for (int32_t i=0; i < FLAGS_test_thread_num; ++i) {
+    threads.emplace_back(new std::thread([&tracer, &countDown, &layerSize,
+                                         &startBarrier, &doneBarrier,
+                                         &callback]{
+      callback(tracer, countDown, layerSize, startBarrier, doneBarrier);
+    }));
+  }
+  size_t cntDown = countDown;
+  while (cntDown-- > 0) {
+    startBarrier.wait();
+    doneBarrier.wait();
+    ASSERT_TRUE(tracer.empty());
+  }
+
+  for (auto& thread : threads) {
+    thread->join();
+  }
+}
+
+
+TEST(CustomStackTrace, normalTrain) {
+  testNormalImpl([](paddle::CustomStackTrace<std::string>& tracer,
+                 size_t countDown, size_t layerSize,
+                 paddle::ThreadBarrier& start, paddle::ThreadBarrier& finish){
+    while (countDown-- > 0) {
+      start.wait();
+      for (size_t i=0; i < layerSize; ++i) {
+        tracer.push("layer_" + std::to_string(i));
+      }
+      tracer.pop("");
+      for (size_t i=0; i < layerSize; ++i) {
+        tracer.pop("layer_" + std::to_string(layerSize - 1 - i));
+      }
+      finish.wait();
+    }
+  });
+}
+
+TEST(CustomStackTrace, normalTest) {
+  testNormalImpl([] (paddle::CustomStackTrace<std::string>& tracer,
+                 size_t countDown, size_t layerSize,
+                 paddle::ThreadBarrier& start, paddle::ThreadBarrier& finish){
+    while (countDown-- > 0) {
+      start.wait();
+      for (size_t i=0; i < layerSize; ++i) {
+        tracer.push("layer_" + std::to_string(i));
+      }
+      tracer.clear();  // in forward test, tracer will clear after forward.
+      finish.wait();
+    }
+  });
+}
+
+int main(int argc, char** argv) {
+  testing::InitGoogleTest(&argc, argv);
+  paddle::initMain(argc, argv);
+  return RUN_ALL_TESTS();
+}

paddle/utils/tests/test_CustomStackTracePrint.cpp

+/* Copyright (c) 2016 Baidu, Inc. All Rights Reserve.
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License. */
+
+#include "paddle/utils/Util.h"
+#include "paddle/utils/CustomStackTrace.h"
+
+int main(int argc, char** argv) {
+  paddle::initMain(argc, argv);
+
+  for (size_t i=0; i < 1000; ++i) {
+    paddle::gLayerStackTrace.push("layer_" + std::to_string(i));
+    if (i == 998) {
+      throw "Unhandle exception";
+    }
+  }
+
+  return 0;
+}

paddle/utils/tests/test_CustomStackTracePrint.sh

+#!/bin/bash
+echo "Test Custom Stack Trace print correct result when fail"
+./test_CustomStackTracePrint >customStackTraceLog 2>&1
+if [ $? -eq 0 ]; then
+  exit 1
+else
+  set -e
+  TEXT=""
+  for ((i=0; i<=998; i++))
+  do
+    TEXT="layer_$i, "$TEXT
+  done
+  TEXT="Forwarding "$TEXT
+  grep -q "$TEXT" customStackTraceLog
+fi