The virDomainDefParse* and virDomainDefFormat* methods both
accept the VIR_DOMAIN_XML_* flags defined in the public API,
along with a set of other VIR_DOMAIN_XML_INTERNAL_* flags
defined in domain_conf.c.

This is seriously confusing & error prone for a number of
reasons:

 - VIR_DOMAIN_XML_SECURE, VIR_DOMAIN_XML_MIGRATABLE and
   VIR_DOMAIN_XML_UPDATE_CPU are only relevant for the
   formatting operation
 - Some of the VIR_DOMAIN_XML_INTERNAL_* flags only apply
   to parse or to format, but not both.

This patch cleanly separates out the flags. There are two
distint VIR_DOMAIN_DEF_PARSE_* and VIR_DOMAIN_DEF_FORMAT_*
flags that are used by the corresponding methods. The
VIR_DOMAIN_XML_* flags received via public API calls must
be converted to the VIR_DOMAIN_DEF_FORMAT_* flags where
needed.

The various calls to virDomainDefParse which hardcoded the
use of the VIR_DOMAIN_XML_INACTIVE flag change to use the
VIR_DOMAIN_DEF_PARSE_INACTIVE flag.