index-pack --strict looks up and follows parent commits. If shallow
information is not ready by the time index-pack is run, index-pack may
be led to non-existent objects. Make fetch-pack save shallow file to
disk before invoking index-pack.

git learns new global option --shallow-file to pass on the alternate
shallow file path. Undocumented (and not even support --shallow-file=
syntax) because it's unlikely to be used again elsewhere.
Signed-off-by: NNguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: NJunio C Hamano <gitster@pobox.com>