Summary:
This is a new API added to db.h to allow for fetching all merge operands associated with a Key. The main motivation for this API is to support use cases where doing a full online merge is not necessary as it is performance sensitive. Example use-cases:
1. Update subset of columns and read subset of columns -
Imagine a SQL Table, a row is encoded as a K/V pair (as it is done in MyRocks). If there are many columns and users only updated one of them, we can use merge operator to reduce write amplification. While users only read one or two columns in the read query, this feature can avoid a full merging of the whole row, and save some CPU.
2. Updating very few attributes in a value which is a JSON-like document -
Updating one attribute can be done efficiently using merge operator, while reading back one attribute can be done more efficiently if we don't need to do a full merge.
----------------------------------------------------------------------------------------------------
API :
Status GetMergeOperands(
      const ReadOptions& options, ColumnFamilyHandle* column_family,
      const Slice& key, PinnableSlice* merge_operands,
      GetMergeOperandsOptions* get_merge_operands_options,
      int* number_of_operands)

Example usage :
int size = 100;
int number_of_operands = 0;
std::vector<PinnableSlice> values(size);
GetMergeOperandsOptions merge_operands_info;
db_->GetMergeOperands(ReadOptions(), db_->DefaultColumnFamily(), "k1", values.data(), merge_operands_info, &number_of_operands);

Description :
Returns all the merge operands corresponding to the key. If the number of merge operands in DB is greater than merge_operands_options.expected_max_number_of_operands no merge operands are returned and status is Incomplete. Merge operands returned are in the order of insertion.
merge_operands-> Points to an array of at-least merge_operands_options.expected_max_number_of_operands and the caller is responsible for allocating it. If the status returned is Incomplete then number_of_operands will contain the total number of merge operands found in DB for key.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5604

Test Plan:
Added unit test and perf test in db_bench that can be run using the command:
./db_bench -benchmarks=getmergeoperands --merge_operator=sortlist

Differential Revision: D16657366

Pulled By: vjnadimpalli

fbshipit-source-id: 0faadd752351745224ee12d4ae9ef3cb529951bf

Summary:
In some cases, we don't have to get really accurate number. Something like 10% off is fine, we can create a new option for that use case. In this case, we can calculate size for full files first, and avoid estimation inside SST files if full files got us a huge number. For example, if we already covered 100GB of data, we should be able to skip partial dives into 10 SST files of 30MB.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5609

Differential Revision: D16433481

Pulled By: elipoz

fbshipit-source-id: 5830b31e1c656d0fd3a00d7fd2678ddc8f6e601b

Summary:
The `TransactionTest.MultiGetBatchedTest` were failing with unprepared batches because we were not using the correct callbacks. Override MultiGet to pass down the correct ReadCallback. A similar problem is also fixed in WritePrepared.

This PR also fixes an issue similar to (https://github.com/facebook/rocksdb/pull/5147), but for MultiGet instead of Get.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5634

Differential Revision: D16552674

Pulled By: lth

fbshipit-source-id: 736eaf8e919c6b13d5f5655b1c0d36b57ad04804

Summary:
The new DB::GetApproximateSizes with SizeApproximationOptions argument, which allows to add more options/knobs to the DB::GetApproximateSizes call (beyond only the include_flags)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5626

Differential Revision: D16496913

Pulled By: elipoz

fbshipit-source-id: ee8c6c182330a285fa056ecfc3905a592b451720

Summary:
In previous https://github.com/facebook/rocksdb/issues/5079, we added user-specified timestamp to `DB::Get()` and `DB::Put()`. Limitation is that these two functions may cause extra memory allocation and key copy. The reason is that `WriteBatch` does not allocate extra memory for timestamps because it is not aware of timestamp size, and we did not provide an API to assign/update timestamp of each key within a `WriteBatch`.
We address these issues in this PR by doing the following.
1. Add a `timestamp_size_` to `WriteBatch` so that `WriteBatch` can take timestamps into account when calling `WriteBatch::Put`, `WriteBatch::Delete`, etc.
2. Add APIs `WriteBatch::AssignTimestamp` and `WriteBatch::AssignTimestamps` so that application can assign/update timestamps for each key in a `WriteBatch`.
3. Avoid key copy in `GetImpl` by adding new constructor to `LookupKey`.

Test plan (on devserver):
```
$make clean && COMPILE_WITH_ASAN=1 make -j32 all
$./db_basic_test --gtest_filter=Timestamp/DBBasicTestWithTimestampWithParam.PutAndGet/*
$make check
```
If the API extension looks good, I will add more unit tests.

Some simple benchmark using db_bench.
```
$rm -rf /dev/shm/dbbench/* && TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillseq,readrandom -num=1000000
$rm -rf /dev/shm/dbbench/* && TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillrandom -num=1000000 -disable_wal=true
```
Master is at a78503bd.
```
|        | readrandom | fillrandom |
| master | 15.53 MB/s | 25.97 MB/s |
| PR5502 | 16.70 MB/s | 25.80 MB/s |
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5502

Differential Revision: D16340894

Pulled By: riversand963

fbshipit-source-id: 51132cf792be07d1efc3ac33f5768c4ee2608bb8

Summary:
There are a number of fixes in this PR (with most bugs found via the added stress tests):
1. Re-enable reseek optimization. This was initially disabled to avoid infinite loops in https://github.com/facebook/rocksdb/pull/3955 but this can be resolved by remembering not to reseek after a reseek has already been done. This problem only affects forward iteration in `DBIter::FindNextUserEntryInternal`, as we already disable reseeking in `DBIter::FindValueForCurrentKeyUsingSeek`.
2. Verify that ReadOption.snapshot can be safely used for iterator creation. Some snapshots would not give correct results because snaphsot validation would not be enforced, breaking some assumptions in Prev() iteration.
3. In the non-snapshot Get() case, reads done at `LastPublishedSequence` may not be enough, because unprepared sequence numbers are not published. Use `std::max(published_seq, max_visible_seq)` to do lookups instead.
4. Add stress test to test reading own writes.
5. Minor bug in the allow_concurrent_memtable_write case where we forgot to pass in batch_per_txn_.
6. Minor performance optimization in `CalcMaxUnpreparedSequenceNumber` by assigning by reference instead of value.
7. Add some more comments everywhere.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5573

Differential Revision: D16276089

Pulled By: lth

fbshipit-source-id: 18029c944eb427a90a87dee76ac1b23f37ec1ccb

Summary:
Refresh of the earlier change here - https://github.com/facebook/rocksdb/issues/5135

This is a review request for code change needed for - https://github.com/facebook/rocksdb/issues/3469
"Add support for taking snapshot of a column family and creating column family from a given CF snapshot"

We have an implementation for this that we have been testing internally. We have two new APIs that together provide this functionality.

(1) ExportColumnFamily() - This API is modelled after CreateCheckpoint() as below.
// Exports all live SST files of a specified Column Family onto export_dir,
// returning SST files information in metadata.
// - SST files will be created as hard links when the directory specified
//   is in the same partition as the db directory, copied otherwise.
// - export_dir should not already exist and will be created by this API.
// - Always triggers a flush.
virtual Status ExportColumnFamily(ColumnFamilyHandle* handle,
                                  const std::string& export_dir,
                                  ExportImportFilesMetaData** metadata);

Internally, the API will DisableFileDeletions(), GetColumnFamilyMetaData(), Parse through
metadata, creating links/copies of all the sst files, EnableFileDeletions() and complete the call by
returning the list of file metadata.

(2) CreateColumnFamilyWithImport() - This API is modeled after IngestExternalFile(), but invoked only during a CF creation as below.
// CreateColumnFamilyWithImport() will create a new column family with
// column_family_name and import external SST files specified in metadata into
// this column family.
// (1) External SST files can be created using SstFileWriter.
// (2) External SST files can be exported from a particular column family in
//     an existing DB.
// Option in import_options specifies whether the external files are copied or
// moved (default is copy). When option specifies copy, managing files at
// external_file_path is caller's responsibility. When option specifies a
// move, the call ensures that the specified files at external_file_path are
// deleted on successful return and files are not modified on any error
// return.
// On error return, column family handle returned will be nullptr.
// ColumnFamily will be present on successful return and will not be present
// on error return. ColumnFamily may be present on any crash during this call.
virtual Status CreateColumnFamilyWithImport(
    const ColumnFamilyOptions& options, const std::string& column_family_name,
    const ImportColumnFamilyOptions& import_options,
    const ExportImportFilesMetaData& metadata,
    ColumnFamilyHandle** handle);

Internally, this API creates a new CF, parses all the sst files and adds it to the specified column family, at the same level and with same sequence number as in the metadata. Also performs safety checks with respect to overlaps between the sst files being imported.

If incoming sequence number is higher than current local sequence number, local sequence
number is updated to reflect this.

Note, as the sst files is are being moved across Column Families, Column Family name in sst file
will no longer match the actual column family on destination DB. The API does not modify Column
Family name or id in the sst files being imported.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5495

Differential Revision: D16018881

fbshipit-source-id: 9ae2251025d5916d35a9fc4ea4d6707f6be16ff9

Summary:
Sample info log output from db_bench:
In-memory:
```
2019/07/12-21:39:19.478490 7fa01b3f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:39:19.478633 7fa01b3f5700 [_impl/db_impl.cc:753] Storing 145 stats with timestamp 1562992759 to in-memory stats history
2019/07/12-21:39:19.478670 7fa01b3f5700 [_impl/db_impl.cc:766] [Pre-GC] In-memory stats history size: 1051218 bytes, slice count: 103
2019/07/12-21:39:19.478704 7fa01b3f5700 [_impl/db_impl.cc:775] [Post-GC] In-memory stats history size: 1051218 bytes, slice count: 102
```
On-disk:
```
2019/07/12-21:48:53.862548 7f24943f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:48:53.862553 7f24943f5700 [_impl/db_impl.cc:709] Reading 145 stats from statistics
2019/07/12-21:48:53.862852 7f24943f5700 [_impl/db_impl.cc:737] Writing 145 stats with timestamp 1562993333 to persistent stats CF succeeded
```
```
2019/07/12-21:48:51.861711 7f24943f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:48:51.861729 7f24943f5700 [_impl/db_impl.cc:709] Reading 145 stats from statistics
2019/07/12-21:48:51.861921 7f24943f5700 [_impl/db_impl.cc:732] Writing to persistent stats CF failed -- Result incomplete: Write stall
...
2019/07/12-21:48:51.873032 7f2494bf6700 [WARN] [lumn_family.cc:749] [default] Stopping writes because we have 2 immutable memtables (waiting for flush), max_write_buffer_number is set to 2
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5566

Differential Revision: D16258187

Pulled By: miasantreble

fbshipit-source-id: 292497099b941418590ed4312411bee36e244dc5

Summary:
1. Cleanup WAL trash files on open
2. Don't apply deletion rate limit if WAL dir is different from db dir
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5520

Test Plan: Add new unit tests and make check

Differential Revision: D16096750

Pulled By: anand1976

fbshipit-source-id: 6f07858ad864b754b711db416f0389c45ede599b

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5526

Test Plan:
OPT=-g V=1 make J=1 unity_test -j32
make clean && make -j32

Differential Revision: D16079315

Pulled By: HaoyuHuang

fbshipit-source-id: 294ab439cf0db8dd5da44e30eabf0cbb2bb8c4f6

Summary:
It it not safe to assume application had sync the SST file before ingest it into DB. Also the directory to put the ingested file needs to be fsync, otherwise the file can be lost. For integrity of RocksDB we need to sync the ingested file and directory before apply the change to manifest.

Also syncing after writing global sequence when write_global_seqno=true was removed in https://github.com/facebook/rocksdb/issues/4172. Adding it back.

Fixes https://github.com/facebook/rocksdb/issues/5287.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5435

Test Plan:
Test ingest file with ldb command and observe fsync/fdatasync in strace output. Tried both move_files=true and move_files=false.
https://gist.github.com/yiwu-arbug/650a4023f57979056d83485fa863bef9

More test suggestions are welcome.

Differential Revision: D15941675

Pulled By: riversand963

fbshipit-source-id: 389533f3923065a96df2cdde23ff4724a1810d78

Summary:
This PR adds more callers for table readers. These information are only used for block cache analysis so that we can know which caller accesses a block.
1. It renames the BlockCacheLookupCaller to TableReaderCaller as passing the caller from upstream requires changes to table_reader.h and TableReaderCaller is a more appropriate name.
2. It adds more table reader callers in table/table_reader_caller.h, e.g., kCompactionRefill, kExternalSSTIngestion, and kBuildTable.

This PR is long as it requires modification of interfaces in table_reader.h, e.g., NewIterator.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5454

Test Plan: make clean && COMPILE_WITH_ASAN=1 make check -j32.

Differential Revision: D15819451

Pulled By: HaoyuHuang

fbshipit-source-id: b6caa704c8fb96ddd15b9a934b7e7ea87f88092d

Summary:
`DBImplSecondary` calls `CheckConsistency()` during open. In the past, `DBImplSecondary` did not override this function thus `DBImpl::CheckConsistency()` is called.
The following can happen. The secondary instance is performing consistency check which calls `GetFileSize(file_path)` but the file at `file_path` is deleted by the primary instance. `DBImpl::CheckConsistency` does not account for this and fails the consistency check. This is undesirable. The solution is that, we call `DBImpl::CheckConsistency()` first. If it passes, then we are good. If not, we give it a second chance and handles the case of file(s) being deleted.

Test plan (on dev server):
```
$make clean && make -j20 all
$./db_secondary_test
```
All other existing unit tests must pass as well.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5469

Differential Revision: D15861845

Pulled By: riversand963

fbshipit-source-id: 507d72392508caed3cd003bb2e2aa43f993dd597

Summary:
This PR continues the work in https://github.com/facebook/rocksdb/pull/4748 and https://github.com/facebook/rocksdb/pull/4535 by adding a new DBOption `persist_stats_to_disk` which instructs RocksDB to persist stats history to RocksDB itself. When statistics is enabled, and  both options `stats_persist_period_sec` and `persist_stats_to_disk` are set, RocksDB will periodically write stats to a built-in column family in the following form: key -> (timestamp in microseconds)#(stats name), value -> stats value. The existing API `GetStatsHistory` will detect the current value of `persist_stats_to_disk` and either read from in-memory data structure or from the hidden column family on disk.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5046

Differential Revision: D15863138

Pulled By: miasantreble

fbshipit-source-id: bb82abdb3f2ca581aa42531734ac799f113e931b

Summary:
It seems like CF Options are not properly validated  when creating a new column family with `CreateColumnFamily` API; only a selected few checks are done. Calling `ColumnFamilyData::ValidateOptions`, which is the single source for all CFOptions validations,  will help fix this. (`ColumnFamilyData::ValidateOptions` is already called at the time of `DB::Open`).

**Test Plan:**
Added a new test: `DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions`
```
TEST_TMPDIR=/dev/shm ./db_test --gtest_filter=DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions
```
Also ran gtest-parallel to make sure the new test is not flaky.
```
TEST_TMPDIR=/dev/shm ~/gtest-parallel/gtest-parallel ./db_test --gtest_filter=DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions --repeat=10000
[10000/10000] DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions (15 ms)
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5453

Differential Revision: D15816851

Pulled By: sagar0

fbshipit-source-id: 9e702b9850f5c4a7e0ef8d39e1e6f9b81e7fe1e5

Summary:
This PR integrates the block cache tracer class into db_impl.cc.
db_impl.cc contains a member variable of AtomicBlockCacheTraceWriter class and passes its reference to the block_based_table_reader.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5433

Differential Revision: D15728016

Pulled By: HaoyuHuang

fbshipit-source-id: 23d5659e8c82d556833dcc1a5558aac8c1f7db71

Summary:
If a memtable definitely covers a key, there isn't a need to check older memtables.
We can skip them by checking the earliest sequence number.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4941

Differential Revision: D13932666

fbshipit-source-id: b9d52f234b8ad9dd3bf6547645cd457175a3ca9b

Summary:
To avoid deadlock mutex_ should never be acquired before log_write_mutex_. The patch documents that and also fixes one case in ::FlushWAL that acquires mutex_ through ::WriteStatusCheck when it already holds lock on log_write_mutex_.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5437

Differential Revision: D15749722

Pulled By: maysamyabandeh

fbshipit-source-id: f57b69c44b4b80cc6d7ddf3d3fdf4a9eb5a5a45a

Summary:
BlockCacheLookupContext only contains the caller for now.
We will trace block accesses at five places:
1. BlockBasedTable::GetFilter.
2. BlockBasedTable::GetUncompressedDict.
3. BlockBasedTable::MaybeReadAndLoadToCache. (To trace access on data, index, and range deletion block.)
4. BlockBasedTable::Get. (To trace the referenced key and whether the referenced key exists in a fetched data block.)
5. BlockBasedTable::MultiGet. (To trace the referenced key and whether the referenced key exists in a fetched data block.)

We create the context at:
1. BlockBasedTable::Get. (kUserGet)
2. BlockBasedTable::MultiGet. (kUserMGet)
3. BlockBasedTable::NewIterator. (either kUserIterator, kCompaction, or external SST ingestion calls this function.)
4. BlockBasedTable::Open. (kPrefetch)
5. Index/Filter::CacheDependencies. (kPrefetch)
6. BlockBasedTable::ApproximateOffsetOf. (kCompaction or kUserApproximateSize).

I loaded 1 million key-value pairs into the database and ran the readrandom benchmark with a single thread. I gave the block cache 10 GB to make sure all reads hit the block cache after warmup. The throughput is comparable.
Throughput of this PR: 231334 ops/s.
Throughput of the master branch: 238428 ops/s.

Experiment setup:
RocksDB:    version 6.2
Date:       Mon Jun 10 10:42:51 2019
CPU:        24 * Intel Core Processor (Skylake)
CPUCache:   16384 KB
Keys:       20 bytes each
Values:     100 bytes each (100 bytes after compression)
Entries:    1000000
Prefix:    20 bytes
Keys per prefix:    0
RawSize:    114.4 MB (estimated)
FileSize:   114.4 MB (estimated)
Write rate: 0 bytes/second
Read rate: 0 ops/second
Compression: NoCompression
Compression sampling rate: 0
Memtablerep: skip_list
Perf Level: 1

Load command: ./db_bench --benchmarks="fillseq" --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000

Run command: ./db_bench --benchmarks="readrandom,stats" --use_existing_db --threads=1 --duration=120 --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000 --duration=120

TODOs:
1. Create a caller for external SST file ingestion and differentiate the callers for iterator.
2. Integrate tracer to trace block cache accesses.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5421

Differential Revision: D15704258

Pulled By: HaoyuHuang

fbshipit-source-id: 4aa8a55f8cb1576ffb367bfa3186a91d8f06d93a

Summary:
When using `PRIu64` type of printf specifier, current code base does the following:
```
#ifndef __STDC_FORMAT_MACROS
#define __STDC_FORMAT_MACROS
#endif
#include <inttypes.h>
```
However, this can be simplified to
```
#include <cinttypes>
```
as long as flag `-std=c++11` is used.
This should solve issues like https://github.com/facebook/rocksdb/issues/5159
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5402

Differential Revision: D15701195

Pulled By: miasantreble

fbshipit-source-id: 6dac0a05f52aadb55e9728038599d3d2e4b59d03

Summary:
It's useful to be able to (optionally) associate key-value pairs with user-provided timestamps. This PR is an early effort towards this goal and continues the work of facebook#4942. A suite of new unit tests exist in DBBasicTestWithTimestampWithParam. Support for timestamp requires the user to provide timestamp as a slice in `ReadOptions` and `WriteOptions`. All timestamps of the same database must share the same length, format, etc. The format of the timestamp is the same throughout the same database, and the user is responsible for providing a comparator function (Comparator) to order the <key, timestamp> tuples. Once created, the format and length of the timestamp cannot change (at least for now).

Test plan (on devserver):
```
$COMPILE_WITH_ASAN=1 make -j32 all
$./db_basic_test --gtest_filter=Timestamp/DBBasicTestWithTimestampWithParam.PutAndGet/*
$make check
```
All tests must pass.

We also run the following db_bench tests to verify whether there is regression on Get/Put while timestamp is not enabled.
```
$TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillseq,readrandom -num=1000000
$TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillrandom -num=1000000
```
Repeat for 6 times for both versions.

Results are as follows:
```
|        | readrandom | fillrandom |
| master | 16.77 MB/s | 47.05 MB/s |
| PR5079 | 16.44 MB/s | 47.03 MB/s |
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5079

Differential Revision: D15132946

Pulled By: riversand963

fbshipit-source-id: 833a0d657eac21182f0f206c910a6438154c742c

Summary:
Currently we validate options in DB::Open. However the validation step is missing when options are dynamically updated in ::SetOptions. The patch fixes that.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5368

Differential Revision: D15540101

Pulled By: maysamyabandeh

fbshipit-source-id: d27bbffd8f0252d1b50bcf59e0a70a278ed937f4

Summary:
Many logging related source files are under util/. It will be more structured if they are together.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5387

Differential Revision: D15579036

Pulled By: siying

fbshipit-source-id: 3850134ed50b8c0bb40a0c8ae1f184fa4081303f

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5390

Differential Revision: D15579388

Pulled By: vjnadimpalli

fbshipit-source-id: 5bfc95e31554b8ff05b97b76d6534113f527f366

Summary:
Move arena, allocator, and memory tools under util to a separate memory/ directory.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5382

Differential Revision: D15564655

Pulled By: siying

fbshipit-source-id: 9cd6b5d0d3d52b39606e19221fa154596e5852a5

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5373

Differential Revision: D15559425

Pulled By: vjnadimpalli

fbshipit-source-id: 5d6d6d615582bedd96a4b879bb25d429a6de8b55

Summary:
There are too many types of files under util/. Some test related files don't belong to there or just are just loosely related. Mo
ve them to a new directory test_util/, so that util/ is cleaner.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5377

Differential Revision: D15551366

Pulled By: siying

fbshipit-source-id: 0f5c8653832354ef8caa31749c0143815d719e2c

Summary:
util/ means for lower level libraries, so it's a good idea to move the files which requires knowledge to DB out. Create a file/ and move some files there.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5375

Differential Revision: D15550935

Pulled By: siying

fbshipit-source-id: 61a9715dcde5386eebfb43e93f847bba1ae0d3f2

Summary:
Sometimes, users might make mistake of not releasing snapshots before closing the DB. This is undocumented use of RocksDB and the behavior is unknown. We return DB::Close() to provide a way to check it for the users. Aborted() will be returned to users when they call DB::Close().
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5272

Differential Revision: D15159713

Pulled By: siying

fbshipit-source-id: 39369def612398d9f239d83d396b5a28e5af65cd

Summary:
Currently one thread in RocksDB keeps a WAL file open while another thread
deletes it. Although the first thread never writes to the WAL again, it still
tries to close it in the end. This is fine on POSIX, but can be problematic on
other platforms, e.g. HDFS, etc.. It will either cause a lot of warning messages or
throw exceptions. The solution is to let the second thread close the WAL before deleting it.

RocksDB keeps the writers of the logs to delete in `logs_to_free_`, which is passed to `job_context` during `FindObsoleteFiles` (holding mutex). Then in `PurgeObsoleteFiles` (without mutex), these writers should close the logs.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5233

Differential Revision: D15032670

Pulled By: riversand963

fbshipit-source-id: c55e8a612db8cc2306644001a5e6d53842a8f754

Summary: PR https://github.com/facebook/rocksdb/pull/4899 implemented the general framework for RocksDB secondary instances. This PR adds the support for WAL tailing in `OpenAsSecondary`, which means after the `OpenAsSecondary` call, the secondary is now able to see primary's writes that are yet to be flushed. The secondary can see primary's writes in the WAL up to the moment of `OpenAsSecondary` call starts.

Differential Revision: D15059905

Pulled By: miasantreble

fbshipit-source-id: 44f71f548a30b38179a7940165e138f622de1f10

Summary:
Found this when test driving the new MultiGet. If you pass unsorted result with sorted_result = false you'll trigger the ASSERT incorrect even though we'll sort down below.

I've also added simple test cover sorted_result=true/false scenario copied from MultiGetSimple.

anand1976
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5195

Differential Revision: D14935475

Pulled By: yizhang82

fbshipit-source-id: 1d2af5e3a003847d965066a16e3b19da68acf170

Summary:
When ReadOption doesn't specify a snapshot, WritePrepared::Get used kMaxSequenceNumber to avoid the cost of creating a new snapshot object (that requires sync over db_mutex). This creates a race condition if it is reading from the writes of a transaction that had duplicate keys: each instance of duplicate key is inserted with a different sequence number and depending on the ordering the ::Get might skip the newer one and read the older one that is obsolete.
The patch fixes that by using last published seq as the snapshot sequence number. It also adds a check after the read is done to ensure that the max_evicted_seq has not advanced the aforementioned seq, which is a very unlikely event. If it did, then the read is not valid since the seq is not backed by an actually snapshot to let IsInSnapshot handle that properly when an overlapping commit is evicted from commit cache.
A unit  test is added to reproduce the race condition with duplicate keys.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5147

Differential Revision: D14758815

Pulled By: maysamyabandeh

fbshipit-source-id: a56915657132cf6ba5e3f5ea1b5d78c803407719

Summary:
This PR introduces a new MultiGet() API, with the underlying implementation grouping keys based on SST file and batching lookups in a file. The reason for the new API is twofold - the definition allows callers to allocate storage for status and values on stack instead of std::vector, as well as return values as PinnableSlices in order to avoid copying, and it keeps the original MultiGet() implementation intact while we experiment with batching.

Batching is useful when there is some spatial locality to the keys being queries, as well as larger batch sizes. The main benefits are due to -
1. Fewer function calls, especially to BlockBasedTableReader::MultiGet() and FullFilterBlockReader::KeysMayMatch()
2. Bloom filter cachelines can be prefetched, hiding the cache miss latency

The next step is to optimize the binary searches in the level_storage_info, index blocks and data blocks, since we could reduce the number of key comparisons if the keys are relatively close to each other. The batching optimizations also need to be extended to other formats, such as PlainTable and filter formats. This also needs to be added to db_stress.

Benchmark results from db_bench for various batch size/locality of reference combinations are given below. Locality was simulated by offsetting the keys in a batch by a stride length. Each SST file is about 8.6MB uncompressed and key/value size is 16/100 uncompressed. To focus on the cpu benefit of batching, the runs were single threaded and bound to the same cpu to eliminate interference from other system events. The results show a 10-25% improvement in micros/op from smaller to larger batch sizes (4 - 32).

Batch   Sizes

1        | 2        | 4         | 8      | 16  | 32

Random pattern (Stride length 0)
4.158 | 4.109 | 4.026 | 4.05 | 4.1 | 4.074        - Get
4.438 | 4.302 | 4.165 | 4.122 | 4.096 | 4.075 - MultiGet (no batching)
4.461 | 4.256 | 4.277 | 4.11 | 4.182 | 4.14        - MultiGet (w/ batching)

Good locality (Stride length 16)
4.048 | 3.659 | 3.248 | 2.99 | 2.84 | 2.753
4.429 | 3.728 | 3.406 | 3.053 | 2.911 | 2.781
4.452 | 3.45 | 2.833 | 2.451 | 2.233 | 2.135

Good locality (Stride length 256)
4.066 | 3.786 | 3.581 | 3.447 | 3.415 | 3.232
4.406 | 4.005 | 3.644 | 3.49 | 3.381 | 3.268
4.393 | 3.649 | 3.186 | 2.882 | 2.676 | 2.62

Medium locality (Stride length 4096)
4.012 | 3.922 | 3.768 | 3.61 | 3.582 | 3.555
4.364 | 4.057 | 3.791 | 3.65 | 3.57 | 3.465
4.479 | 3.758 | 3.316 | 3.077 | 2.959 | 2.891

dbbench command used (on a DB with 4 levels, 12 million keys)-
TEST_TMPDIR=/dev/shm numactl -C 10  ./db_bench.tmp -use_existing_db=true -benchmarks="readseq,multireadrandom" -write_buffer_size=4194304 -target_file_size_base=4194304 -max_bytes_for_level_base=16777216 -num=12000000 -reads=12000000 -duration=90 -threads=1 -compression_type=none -cache_size=4194304000 -batch_size=32 -disable_auto_compactions=true -bloom_bits=10 -cache_index_and_filter_blocks=true -pin_l0_filter_and_index_blocks_in_cache=true -multiread_batched=true -multiread_stride=4
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5011

Differential Revision: D14348703

Pulled By: anand1976

fbshipit-source-id: 774406dab3776d979c809522a67bedac6c17f84b

Summary:
Expose DB methods to lock and unlock the WAL.

These methods are intended to use by MyRocks in order to obtain WAL
coordinates in consistent way.

Usage scenario is following:

MySQL has performance_schema.log_status which provides information that
enables a backup tool to copy the required log files without locking for
the duration of copy. To populate this table MySQL does following:

1. Lock the binary log. Transactions are not allowed to commit now
2. Save the binary log coordinates
3. Walk through the storage engines and lock writes on each engine. For
   InnoDB, redo log is locked. For MyRocks, WAL should be locked.
4. Ask storage engines for their coordinates. InnoDB reports its current
   LSN and checkpoint LSN. MyRocks should report active WAL files names
   and sizes.
5. Release storage engine's locks
6. Unlock binary log

Backup tool will then use this information to copy InnoDB, RocksDB and
MySQL binary logs up to specified positions to end up with consistent DB
state after restore.

Currently, RocksDB allows to obtain the list of WAL files. Only missing
bit is the method to lock the writes to WAL files.

LockWAL method must flush the WAL in order for the reported size to be
accurate (GetSortedWALFiles is using file system stat call to return the
file size), also, since backup tool is going to copy the WAL, it is
better to be flushed.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5146

Differential Revision: D14815447

Pulled By: maysamyabandeh

fbshipit-source-id: eec9535a6025229ed471119f19fe7b3d8ae888a3

Summary:
Although user should first call StartTrace to begin the RocksDB tracing function and call EndTrace to stop the tracing process, user can accidentally call EndTrace first. It will cause segment fault and crash the DB instance. The issue is fixed by checking the pointer first.

Test case added in db_test2.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5130

Differential Revision: D14691420

Pulled By: zhichao-cao

fbshipit-source-id: 3be13d2f944bc453728ef8eef67b68d7ad0939c8

Summary:
WriteUnPrepared adds a virtual function, MaxUnpreparedSequenceNumber, to ReadCallback, which returns 0 unless WriteUnPrepared is enabled and the transaction has uncommitted data written to the DB. Together with snapshot sequence number, this determines the last sequence that is visible to reads.
The patch clarifies the guarantees of the GetIterator API in WriteUnPrepared transactions and make use of that to statically initialize the read callback and thus avoid the virtual call.
Furthermore it increases the minimum value for min_uncommitted from 0 to 1 as seq 0 is used only for last level keys that are committed in all snapshots.

The following benchmark shows +0.26% higher throughput in seekrandom benchmark.

Benchmark:
./db_bench --benchmarks=fillrandom --use_existing_db=0 --num=1000000 --db=/dev/shm/dbbench

./db_bench --benchmarks=seekrandom[X10] --use_existing_db=1 --db=/dev/shm/dbbench --num=1000000 --duration=60 --seek_nexts=100
seekrandom [AVG    10 runs] : 20355 ops/sec;  225.2 MB/sec
seekrandom [MEDIAN 10 runs] : 20425 ops/sec;  225.9 MB/sec

./db_bench_lessvirtual3 --benchmarks=seekrandom[X10] --use_existing_db=1 --db=/dev/shm/dbbench --num=1000000 --duration=60 --seek_nexts=100
seekrandom [AVG    10 runs] : 20409 ops/sec;  225.8 MB/sec
seekrandom [MEDIAN 10 runs] : 20487 ops/sec;  226.6 MB/sec
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5049

Differential Revision: D14366459

Pulled By: maysamyabandeh

fbshipit-source-id: ebaff8908332a5ae9af7defeadabcb624be660ef

Summary:
Just like ReadOptions::background_purge_on_iterator_cleanup but for ColumnFamilyHandle instead of Iterator.

In our use case we sometimes call ColumnFamilyHandle's destructor from low-latency threads, and sometimes it blocks the thread for a few seconds deleting the files. To avoid that, we can either offload ColumnFamilyHandle's destruction to a background thread on our side, or add this option on rocksdb side. This PR does the latter, to be consistent with how we solve exactly the same problem for iterators using background_purge_on_iterator_cleanup option.

(EDIT: It's avoid_unnecessary_blocking_io now, and affects both CF drops and iterator destructors.)
I'm not quite comfortable with having two separate options (background_purge_on_iterator_cleanup and background_purge_on_cf_cleanup) for such a rarely used thing. Maybe we should merge them? Rename background_purge_on_cf_cleanup to something like delete_files_on_background_threads_only or avoid_blocking_io_in_unexpected_places, and make iterators use it instead of the one in ReadOptions? I can do that here if you guys think it's better.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5043

Differential Revision: D14339233

Pulled By: al13n321

fbshipit-source-id: ccf7efa11c85c9a5b91d969bb55627d0fb01e7b8

Summary:
WAL files are currently not subject to deletion rate limiting by DeleteScheduler. If the size of the WAL files is significant, this can cause a high delete rate on SSDs that may affect other operations. To fix it, force WAL file deletions to go through the SstFileManager. Original PR for this is #2768
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5116

Differential Revision: D14669437

Pulled By: anand1976

fbshipit-source-id: c5f62d0640cebaa1574de841a1d01e4ce2faadf0

Summary:
Following files were run through automatic formatter:
db/db_impl.cc
db/db_impl.h
db/db_impl_compaction_flush.cc
db/db_impl_debug.cc
db/db_impl_files.cc
db/db_impl_readonly.h
db/db_impl_write.cc
db/dbformat.cc
db/dbformat.h
table/block.cc
table/block.h
table/block_based_filter_block.cc
table/block_based_filter_block.h
table/block_based_filter_block_test.cc
table/block_based_table_builder.cc
table/block_based_table_reader.cc
table/block_based_table_reader.h
table/block_builder.cc
table/block_builder.h
table/block_fetcher.cc
table/block_prefix_index.cc
table/block_prefix_index.h
table/block_test.cc
table/format.cc
table/format.h

I could easily run all the files, but I don't want people to feel that
I'm doing it for lines of code changes :)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5114

Differential Revision: D14633040

Pulled By: siying

fbshipit-source-id: 3f346cb53bf21e8c10704400da548dfce1e89a52