Summary:
To avoid deadlock mutex_ should never be acquired before log_write_mutex_. The patch documents that and also fixes one case in ::FlushWAL that acquires mutex_ through ::WriteStatusCheck when it already holds lock on log_write_mutex_.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5437

Differential Revision: D15749722

Pulled By: maysamyabandeh

fbshipit-source-id: f57b69c44b4b80cc6d7ddf3d3fdf4a9eb5a5a45a

Summary:
BlockCacheLookupContext only contains the caller for now.
We will trace block accesses at five places:
1. BlockBasedTable::GetFilter.
2. BlockBasedTable::GetUncompressedDict.
3. BlockBasedTable::MaybeReadAndLoadToCache. (To trace access on data, index, and range deletion block.)
4. BlockBasedTable::Get. (To trace the referenced key and whether the referenced key exists in a fetched data block.)
5. BlockBasedTable::MultiGet. (To trace the referenced key and whether the referenced key exists in a fetched data block.)

We create the context at:
1. BlockBasedTable::Get. (kUserGet)
2. BlockBasedTable::MultiGet. (kUserMGet)
3. BlockBasedTable::NewIterator. (either kUserIterator, kCompaction, or external SST ingestion calls this function.)
4. BlockBasedTable::Open. (kPrefetch)
5. Index/Filter::CacheDependencies. (kPrefetch)
6. BlockBasedTable::ApproximateOffsetOf. (kCompaction or kUserApproximateSize).

I loaded 1 million key-value pairs into the database and ran the readrandom benchmark with a single thread. I gave the block cache 10 GB to make sure all reads hit the block cache after warmup. The throughput is comparable.
Throughput of this PR: 231334 ops/s.
Throughput of the master branch: 238428 ops/s.

Experiment setup:
RocksDB:    version 6.2
Date:       Mon Jun 10 10:42:51 2019
CPU:        24 * Intel Core Processor (Skylake)
CPUCache:   16384 KB
Keys:       20 bytes each
Values:     100 bytes each (100 bytes after compression)
Entries:    1000000
Prefix:    20 bytes
Keys per prefix:    0
RawSize:    114.4 MB (estimated)
FileSize:   114.4 MB (estimated)
Write rate: 0 bytes/second
Read rate: 0 ops/second
Compression: NoCompression
Compression sampling rate: 0
Memtablerep: skip_list
Perf Level: 1

Load command: ./db_bench --benchmarks="fillseq" --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000

Run command: ./db_bench --benchmarks="readrandom,stats" --use_existing_db --threads=1 --duration=120 --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000 --duration=120

TODOs:
1. Create a caller for external SST file ingestion and differentiate the callers for iterator.
2. Integrate tracer to trace block cache accesses.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5421

Differential Revision: D15704258

Pulled By: HaoyuHuang

fbshipit-source-id: 4aa8a55f8cb1576ffb367bfa3186a91d8f06d93a

Summary:
When using `PRIu64` type of printf specifier, current code base does the following:
```
#ifndef __STDC_FORMAT_MACROS
#define __STDC_FORMAT_MACROS
#endif
#include <inttypes.h>
```
However, this can be simplified to
```
#include <cinttypes>
```
as long as flag `-std=c++11` is used.
This should solve issues like https://github.com/facebook/rocksdb/issues/5159
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5402

Differential Revision: D15701195

Pulled By: miasantreble

fbshipit-source-id: 6dac0a05f52aadb55e9728038599d3d2e4b59d03

Summary:
It's useful to be able to (optionally) associate key-value pairs with user-provided timestamps. This PR is an early effort towards this goal and continues the work of facebook#4942. A suite of new unit tests exist in DBBasicTestWithTimestampWithParam. Support for timestamp requires the user to provide timestamp as a slice in `ReadOptions` and `WriteOptions`. All timestamps of the same database must share the same length, format, etc. The format of the timestamp is the same throughout the same database, and the user is responsible for providing a comparator function (Comparator) to order the <key, timestamp> tuples. Once created, the format and length of the timestamp cannot change (at least for now).

Test plan (on devserver):
```
$COMPILE_WITH_ASAN=1 make -j32 all
$./db_basic_test --gtest_filter=Timestamp/DBBasicTestWithTimestampWithParam.PutAndGet/*
$make check
```
All tests must pass.

We also run the following db_bench tests to verify whether there is regression on Get/Put while timestamp is not enabled.
```
$TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillseq,readrandom -num=1000000
$TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillrandom -num=1000000
```
Repeat for 6 times for both versions.

Results are as follows:
```
|        | readrandom | fillrandom |
| master | 16.77 MB/s | 47.05 MB/s |
| PR5079 | 16.44 MB/s | 47.03 MB/s |
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5079

Differential Revision: D15132946

Pulled By: riversand963

fbshipit-source-id: 833a0d657eac21182f0f206c910a6438154c742c

Summary:
Currently we validate options in DB::Open. However the validation step is missing when options are dynamically updated in ::SetOptions. The patch fixes that.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5368

Differential Revision: D15540101

Pulled By: maysamyabandeh

fbshipit-source-id: d27bbffd8f0252d1b50bcf59e0a70a278ed937f4

Summary:
Many logging related source files are under util/. It will be more structured if they are together.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5387

Differential Revision: D15579036

Pulled By: siying

fbshipit-source-id: 3850134ed50b8c0bb40a0c8ae1f184fa4081303f

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5390

Differential Revision: D15579388

Pulled By: vjnadimpalli

fbshipit-source-id: 5bfc95e31554b8ff05b97b76d6534113f527f366

Summary:
Move arena, allocator, and memory tools under util to a separate memory/ directory.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5382

Differential Revision: D15564655

Pulled By: siying

fbshipit-source-id: 9cd6b5d0d3d52b39606e19221fa154596e5852a5

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5373

Differential Revision: D15559425

Pulled By: vjnadimpalli

fbshipit-source-id: 5d6d6d615582bedd96a4b879bb25d429a6de8b55

Summary:
There are too many types of files under util/. Some test related files don't belong to there or just are just loosely related. Mo
ve them to a new directory test_util/, so that util/ is cleaner.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5377

Differential Revision: D15551366

Pulled By: siying

fbshipit-source-id: 0f5c8653832354ef8caa31749c0143815d719e2c

Summary:
util/ means for lower level libraries, so it's a good idea to move the files which requires knowledge to DB out. Create a file/ and move some files there.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5375

Differential Revision: D15550935

Pulled By: siying

fbshipit-source-id: 61a9715dcde5386eebfb43e93f847bba1ae0d3f2

Summary:
Sometimes, users might make mistake of not releasing snapshots before closing the DB. This is undocumented use of RocksDB and the behavior is unknown. We return DB::Close() to provide a way to check it for the users. Aborted() will be returned to users when they call DB::Close().
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5272

Differential Revision: D15159713

Pulled By: siying

fbshipit-source-id: 39369def612398d9f239d83d396b5a28e5af65cd

Summary:
Currently one thread in RocksDB keeps a WAL file open while another thread
deletes it. Although the first thread never writes to the WAL again, it still
tries to close it in the end. This is fine on POSIX, but can be problematic on
other platforms, e.g. HDFS, etc.. It will either cause a lot of warning messages or
throw exceptions. The solution is to let the second thread close the WAL before deleting it.

RocksDB keeps the writers of the logs to delete in `logs_to_free_`, which is passed to `job_context` during `FindObsoleteFiles` (holding mutex). Then in `PurgeObsoleteFiles` (without mutex), these writers should close the logs.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5233

Differential Revision: D15032670

Pulled By: riversand963

fbshipit-source-id: c55e8a612db8cc2306644001a5e6d53842a8f754

Summary: PR https://github.com/facebook/rocksdb/pull/4899 implemented the general framework for RocksDB secondary instances. This PR adds the support for WAL tailing in `OpenAsSecondary`, which means after the `OpenAsSecondary` call, the secondary is now able to see primary's writes that are yet to be flushed. The secondary can see primary's writes in the WAL up to the moment of `OpenAsSecondary` call starts.

Differential Revision: D15059905

Pulled By: miasantreble

fbshipit-source-id: 44f71f548a30b38179a7940165e138f622de1f10

Summary:
Found this when test driving the new MultiGet. If you pass unsorted result with sorted_result = false you'll trigger the ASSERT incorrect even though we'll sort down below.

I've also added simple test cover sorted_result=true/false scenario copied from MultiGetSimple.

anand1976
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5195

Differential Revision: D14935475

Pulled By: yizhang82

fbshipit-source-id: 1d2af5e3a003847d965066a16e3b19da68acf170

Summary:
When ReadOption doesn't specify a snapshot, WritePrepared::Get used kMaxSequenceNumber to avoid the cost of creating a new snapshot object (that requires sync over db_mutex). This creates a race condition if it is reading from the writes of a transaction that had duplicate keys: each instance of duplicate key is inserted with a different sequence number and depending on the ordering the ::Get might skip the newer one and read the older one that is obsolete.
The patch fixes that by using last published seq as the snapshot sequence number. It also adds a check after the read is done to ensure that the max_evicted_seq has not advanced the aforementioned seq, which is a very unlikely event. If it did, then the read is not valid since the seq is not backed by an actually snapshot to let IsInSnapshot handle that properly when an overlapping commit is evicted from commit cache.
A unit  test is added to reproduce the race condition with duplicate keys.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5147

Differential Revision: D14758815

Pulled By: maysamyabandeh

fbshipit-source-id: a56915657132cf6ba5e3f5ea1b5d78c803407719

Summary:
This PR introduces a new MultiGet() API, with the underlying implementation grouping keys based on SST file and batching lookups in a file. The reason for the new API is twofold - the definition allows callers to allocate storage for status and values on stack instead of std::vector, as well as return values as PinnableSlices in order to avoid copying, and it keeps the original MultiGet() implementation intact while we experiment with batching.

Batching is useful when there is some spatial locality to the keys being queries, as well as larger batch sizes. The main benefits are due to -
1. Fewer function calls, especially to BlockBasedTableReader::MultiGet() and FullFilterBlockReader::KeysMayMatch()
2. Bloom filter cachelines can be prefetched, hiding the cache miss latency

The next step is to optimize the binary searches in the level_storage_info, index blocks and data blocks, since we could reduce the number of key comparisons if the keys are relatively close to each other. The batching optimizations also need to be extended to other formats, such as PlainTable and filter formats. This also needs to be added to db_stress.

Benchmark results from db_bench for various batch size/locality of reference combinations are given below. Locality was simulated by offsetting the keys in a batch by a stride length. Each SST file is about 8.6MB uncompressed and key/value size is 16/100 uncompressed. To focus on the cpu benefit of batching, the runs were single threaded and bound to the same cpu to eliminate interference from other system events. The results show a 10-25% improvement in micros/op from smaller to larger batch sizes (4 - 32).

Batch   Sizes

1        | 2        | 4         | 8      | 16  | 32

Random pattern (Stride length 0)
4.158 | 4.109 | 4.026 | 4.05 | 4.1 | 4.074        - Get
4.438 | 4.302 | 4.165 | 4.122 | 4.096 | 4.075 - MultiGet (no batching)
4.461 | 4.256 | 4.277 | 4.11 | 4.182 | 4.14        - MultiGet (w/ batching)

Good locality (Stride length 16)
4.048 | 3.659 | 3.248 | 2.99 | 2.84 | 2.753
4.429 | 3.728 | 3.406 | 3.053 | 2.911 | 2.781
4.452 | 3.45 | 2.833 | 2.451 | 2.233 | 2.135

Good locality (Stride length 256)
4.066 | 3.786 | 3.581 | 3.447 | 3.415 | 3.232
4.406 | 4.005 | 3.644 | 3.49 | 3.381 | 3.268
4.393 | 3.649 | 3.186 | 2.882 | 2.676 | 2.62

Medium locality (Stride length 4096)
4.012 | 3.922 | 3.768 | 3.61 | 3.582 | 3.555
4.364 | 4.057 | 3.791 | 3.65 | 3.57 | 3.465
4.479 | 3.758 | 3.316 | 3.077 | 2.959 | 2.891

dbbench command used (on a DB with 4 levels, 12 million keys)-
TEST_TMPDIR=/dev/shm numactl -C 10  ./db_bench.tmp -use_existing_db=true -benchmarks="readseq,multireadrandom" -write_buffer_size=4194304 -target_file_size_base=4194304 -max_bytes_for_level_base=16777216 -num=12000000 -reads=12000000 -duration=90 -threads=1 -compression_type=none -cache_size=4194304000 -batch_size=32 -disable_auto_compactions=true -bloom_bits=10 -cache_index_and_filter_blocks=true -pin_l0_filter_and_index_blocks_in_cache=true -multiread_batched=true -multiread_stride=4
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5011

Differential Revision: D14348703

Pulled By: anand1976

fbshipit-source-id: 774406dab3776d979c809522a67bedac6c17f84b

Summary:
Expose DB methods to lock and unlock the WAL.

These methods are intended to use by MyRocks in order to obtain WAL
coordinates in consistent way.

Usage scenario is following:

MySQL has performance_schema.log_status which provides information that
enables a backup tool to copy the required log files without locking for
the duration of copy. To populate this table MySQL does following:

1. Lock the binary log. Transactions are not allowed to commit now
2. Save the binary log coordinates
3. Walk through the storage engines and lock writes on each engine. For
   InnoDB, redo log is locked. For MyRocks, WAL should be locked.
4. Ask storage engines for their coordinates. InnoDB reports its current
   LSN and checkpoint LSN. MyRocks should report active WAL files names
   and sizes.
5. Release storage engine's locks
6. Unlock binary log

Backup tool will then use this information to copy InnoDB, RocksDB and
MySQL binary logs up to specified positions to end up with consistent DB
state after restore.

Currently, RocksDB allows to obtain the list of WAL files. Only missing
bit is the method to lock the writes to WAL files.

LockWAL method must flush the WAL in order for the reported size to be
accurate (GetSortedWALFiles is using file system stat call to return the
file size), also, since backup tool is going to copy the WAL, it is
better to be flushed.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5146

Differential Revision: D14815447

Pulled By: maysamyabandeh

fbshipit-source-id: eec9535a6025229ed471119f19fe7b3d8ae888a3

Summary:
Although user should first call StartTrace to begin the RocksDB tracing function and call EndTrace to stop the tracing process, user can accidentally call EndTrace first. It will cause segment fault and crash the DB instance. The issue is fixed by checking the pointer first.

Test case added in db_test2.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5130

Differential Revision: D14691420

Pulled By: zhichao-cao

fbshipit-source-id: 3be13d2f944bc453728ef8eef67b68d7ad0939c8

Summary:
WriteUnPrepared adds a virtual function, MaxUnpreparedSequenceNumber, to ReadCallback, which returns 0 unless WriteUnPrepared is enabled and the transaction has uncommitted data written to the DB. Together with snapshot sequence number, this determines the last sequence that is visible to reads.
The patch clarifies the guarantees of the GetIterator API in WriteUnPrepared transactions and make use of that to statically initialize the read callback and thus avoid the virtual call.
Furthermore it increases the minimum value for min_uncommitted from 0 to 1 as seq 0 is used only for last level keys that are committed in all snapshots.

The following benchmark shows +0.26% higher throughput in seekrandom benchmark.

Benchmark:
./db_bench --benchmarks=fillrandom --use_existing_db=0 --num=1000000 --db=/dev/shm/dbbench

./db_bench --benchmarks=seekrandom[X10] --use_existing_db=1 --db=/dev/shm/dbbench --num=1000000 --duration=60 --seek_nexts=100
seekrandom [AVG    10 runs] : 20355 ops/sec;  225.2 MB/sec
seekrandom [MEDIAN 10 runs] : 20425 ops/sec;  225.9 MB/sec

./db_bench_lessvirtual3 --benchmarks=seekrandom[X10] --use_existing_db=1 --db=/dev/shm/dbbench --num=1000000 --duration=60 --seek_nexts=100
seekrandom [AVG    10 runs] : 20409 ops/sec;  225.8 MB/sec
seekrandom [MEDIAN 10 runs] : 20487 ops/sec;  226.6 MB/sec
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5049

Differential Revision: D14366459

Pulled By: maysamyabandeh

fbshipit-source-id: ebaff8908332a5ae9af7defeadabcb624be660ef

Summary:
Just like ReadOptions::background_purge_on_iterator_cleanup but for ColumnFamilyHandle instead of Iterator.

In our use case we sometimes call ColumnFamilyHandle's destructor from low-latency threads, and sometimes it blocks the thread for a few seconds deleting the files. To avoid that, we can either offload ColumnFamilyHandle's destruction to a background thread on our side, or add this option on rocksdb side. This PR does the latter, to be consistent with how we solve exactly the same problem for iterators using background_purge_on_iterator_cleanup option.

(EDIT: It's avoid_unnecessary_blocking_io now, and affects both CF drops and iterator destructors.)
I'm not quite comfortable with having two separate options (background_purge_on_iterator_cleanup and background_purge_on_cf_cleanup) for such a rarely used thing. Maybe we should merge them? Rename background_purge_on_cf_cleanup to something like delete_files_on_background_threads_only or avoid_blocking_io_in_unexpected_places, and make iterators use it instead of the one in ReadOptions? I can do that here if you guys think it's better.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5043

Differential Revision: D14339233

Pulled By: al13n321

fbshipit-source-id: ccf7efa11c85c9a5b91d969bb55627d0fb01e7b8

Summary:
WAL files are currently not subject to deletion rate limiting by DeleteScheduler. If the size of the WAL files is significant, this can cause a high delete rate on SSDs that may affect other operations. To fix it, force WAL file deletions to go through the SstFileManager. Original PR for this is #2768
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5116

Differential Revision: D14669437

Pulled By: anand1976

fbshipit-source-id: c5f62d0640cebaa1574de841a1d01e4ce2faadf0

Summary:
Following files were run through automatic formatter:
db/db_impl.cc
db/db_impl.h
db/db_impl_compaction_flush.cc
db/db_impl_debug.cc
db/db_impl_files.cc
db/db_impl_readonly.h
db/db_impl_write.cc
db/dbformat.cc
db/dbformat.h
table/block.cc
table/block.h
table/block_based_filter_block.cc
table/block_based_filter_block.h
table/block_based_filter_block_test.cc
table/block_based_table_builder.cc
table/block_based_table_reader.cc
table/block_based_table_reader.h
table/block_builder.cc
table/block_builder.h
table/block_fetcher.cc
table/block_prefix_index.cc
table/block_prefix_index.h
table/block_test.cc
table/format.cc
table/format.h

I could easily run all the files, but I don't want people to feel that
I'm doing it for lines of code changes :)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5114

Differential Revision: D14633040

Pulled By: siying

fbshipit-source-id: 3f346cb53bf21e8c10704400da548dfce1e89a52

Summary:
This PR allows RocksDB to run in single-primary, multi-secondary process mode.
The writer is a regular RocksDB (e.g. an `DBImpl`) instance playing the role of a primary.
Multiple `DBImplSecondary` processes (secondaries) share the same set of SST files, MANIFEST, WAL files with the primary. Secondaries tail the MANIFEST of the primary and apply updates to their own in-memory state of the file system, e.g. `VersionStorageInfo`.

This PR has several components:
1. (Originally in #4745). Add a `PathNotFound` subcode to `IOError` to denote the failure when a secondary tries to open a file which has been deleted by the primary.

2. (Similar to #4602). Add `FragmentBufferedReader` to handle partially-read, trailing record at the end of a log from where future read can continue.

3. (Originally in #4710 and #4820). Add implementation of the secondary, i.e. `DBImplSecondary`.
3.1 Tail the primary's MANIFEST during recovery.
3.2 Tail the primary's MANIFEST during normal processing by calling `ReadAndApply`.
3.3 Tailing WAL will be in a future PR.

4. Add an example in 'examples/multi_processes_example.cc' to demonstrate the usage of secondary RocksDB instance in a multi-process setting. Instructions to run the example can be found at the beginning of the source code.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4899

Differential Revision: D14510945

Pulled By: riversand963

fbshipit-source-id: 4ac1c5693e6012ad23f7b4b42d3c374fecbe8886

Summary:
With https://github.com/facebook/rocksdb/pull/3009 we go through every CF
to check whether a bottommost compaction is needed to be triggered. This is done
within DB mutex. What we do within DB mutex may heavily influece the write throughput
we can achieve, so we always want to minimize work there.

Here we try to avoid this for-loop by first check a global threshold. In most of
the time, the CF loop can be avoided.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5090

Differential Revision: D14582684

Pulled By: siying

fbshipit-source-id: 968f6d9bb6affe1a5ebc4910b418300b076f166f

Summary:
Statistics cost too much CPU for some use cases. Add two stats levels
so that people can choose to skip two types of expensive stats, timers and
histograms.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5027

Differential Revision: D14252765

Pulled By: siying

fbshipit-source-id: 75ecec9eaa44c06118229df4f80c366115346592

Summary:
This PR adds public `GetStatsHistory` API to retrieve stats history in the form of an std map. The key of the map is the timestamp in microseconds when the stats snapshot is taken, the value is another std map from stats name to stats value (stored in std string). Two DBOptions are introduced: `stats_persist_period_sec` (default 10 minutes) controls the intervals between two snapshots are taken; `max_stats_history_count` (default 10) controls the max number of history snapshots to keep in memory. RocksDB will stop collecting stats snapshots if `stats_persist_period_sec` is set to 0.

(This PR is the in-memory part of https://github.com/facebook/rocksdb/pull/4535)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4748

Differential Revision: D13961471

Pulled By: miasantreble

fbshipit-source-id: ac836d401ecb84ea92216bf9966f969dedf4ad04

Summary:
if an operation just involves a single column family, then we do
not have to set the kInAtomicGroup tag when writing to MANIFEST. This change
can fix a compatibility test failure, i.e. 5.15 and earlier cannot recognize
kInAtomicGroup tag.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4981

Differential Revision: D14072687

Pulled By: riversand963

fbshipit-source-id: 46b0c61e399f16c6b7169de0b33430d0ed90d6d4

Summary:
Make file ingestion atomic.

 as title.
Ingesting external SST files into multiple column families should be atomic. If
a crash occurs and db reopens, either all column families have successfully
ingested the files before the crash, or non of the ingestions have any effect
on the state of the db.

Also add unit tests for atomic ingestion.

Note that the unit test here does not cover the case of incomplete atomic group
in the MANIFEST, which is covered in VersionSetTest already.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4895

Differential Revision: D13718245

Pulled By: riversand963

fbshipit-source-id: 7df97cc483af73ad44dd6993008f99b083852198

Summary:
Previously, stats were logged in warning level. This was done in that way because
people reported that it wasn't logged in MyRocks. However, later we learned that it turns
out to be due to a bug in MyRocks, which is fixed in
https://github.com/facebook/mysql-5.6/commit/79bb705e74b239d7030b724ea6bbd635eceec531

Now we revert the stats logging to INFO level, so that it doesn't pollute the warning
level logging.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4977

Differential Revision: D14058485

Pulled By: siying

fbshipit-source-id: 19fab323c19d9bc88184287f209551f9a77ca0e6

Summary:
In NotFound cases, stats BYTES_READ and perf_context.get_read_bytes is still be increased. The amount increased will be
whatever size of the string or PinnableSlice that users passed in as the output data structure. This is wrong. Fix this by not
increasing these two counters.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4938

Differential Revision: D13908963

Pulled By: siying

fbshipit-source-id: 60bce42e4fbb9862bba3da36dbc27b2963ea6162

Summary:
With WritePrepared transaction, flush/compaction can contain uncommitted keys, and those keys can get committed during compaction. If a snapshot is taken before the key is committed, it should not see the key. On the other hand, compaction grab the list of snapshots at its beginning, and only consider those snapshots to dedup keys. Consider the case:
```
seq = 1: put "foo" = "bar"
seq = 2: transaction T: delete "foo", prepare
seq = 3: compaction start
seq = 4: take snapshot S
seq = 5: transaction T: commit.
...
seq = N: compaction iterator reached key "foo".
```
When compaction start, the list of snapshot is empty. Compaction doesn't take snapshot S into account. When it reached "foo", transaction T is committed. Compaction may think the value "foo=bar" is not visible by any snapshot (which is wrong), and compact the value out.

The fix is to explicitly take a snapshot before compaction grabbing the list of snapshots. Compaction will then has to keep keys visible to this snapshot.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4883

Differential Revision: D13668775

Pulled By: maysamyabandeh

fbshipit-source-id: 1cab9615f94b7d3e8522cc3d44c3a14c7d4720e4

Summary:
as titled.
Since different bg flush threads can flush different sets of column families
(due to column family creation and drop), we decide not to let one thread
perform atomic flush result installation for other threads. Bg flush threads
will install their atomic flush results sequentially to MANIFEST, using
a conditional variable, i.e. atomic_flush_install_cv_ to coordinate.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4791

Differential Revision: D13498930

Pulled By: riversand963

fbshipit-source-id: dd7482fc41f4bd22dad1e1ef7d4764ef424688d7

Summary:
Avoid locking the DB mutex in order to reference SuperVersions. Instead, we get the thread local cached SuperVersion for each column family in the list. It depends on finding a sequence number that overlaps with all the open memtables. We start with the latest published sequence number, and if any of the memtables is sealed before we can get all the SuperVersions, the process is repeated. After a few times, give up and lock the DB mutex.

Tests:
1. Unit tests
2. make check
3. db_bench -

TEST_TMPDIR=/dev/shm ./db_bench -use_existing_db=true -benchmarks=readrandom -write_buffer_size=4194304 -target_file_size_base=4194304 -max_bytes_for_level_base=16777216 -num=5000000 -reads=1000000 -threads=32 -compression_type=none -cache_size=1048576000 -batch_size=1 -bloom_bits=1
readrandom   :       0.167 micros/op 5983920 ops/sec;  426.2 MB/s (1000000 of 1000000 found)

Multireadrandom with batch size 1:
multireadrandom :       0.176 micros/op 5684033 ops/sec; (1000000 of 1000000 found)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4754

Differential Revision: D13363550

Pulled By: anand1976

fbshipit-source-id: 6243e8de7dbd9c8bb490a8eca385da0c855b1dd4

Summary:
Hi, Lintian, the Debian package checker complains about spelling error (spelling-error-in-binary).

See https://salsa.debian.org/mariadb-team/mariadb-10.3/-/jobs/98380
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4827

Differential Revision: D13566362

Pulled By: riversand963

fbshipit-source-id: cd4e9212133c73b0591030de6cdedaa47575968d

Summary:
The `flush_reason` parameter in `DBImpl::InstallSuperVersionAndScheduleWork` is
not used. Remove it.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4816

Differential Revision: D13543218

Pulled By: riversand963

fbshipit-source-id: 8fc75d49462ce092e85aef0fe0c50936140db153

Summary:
Introduce the first CPU timing counter, perf_context.get_cpu_nanos. This opens a door to more CPU counters in the future.
Only Posix Env has it implemented using clock_gettime() with CLOCK_THREAD_CPUTIME_ID. How accurate the counter is depends on the platform.
Make PerfStepTimer to take an Env as an argument, and sometimes pass it in. The direct reason is to make the unit tests to use SpecialEnv where we can ingest logic there. But in long term, this is a good change.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4741

Differential Revision: D13287798

Pulled By: siying

fbshipit-source-id: 090361049d9d5095d1d1a369fe1338d2e2e1c73f

Summary:
This PR contains the following fixes:

1. Fixing Makefile to support non-default locations of developer tools

2. Fixing compile error using a patch from https://github.com/facebook/rocksdb/pull/4007
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4687

Differential Revision: D13287263

Pulled By: riversand963

fbshipit-source-id: 4525eb42ba7b6f82af5f9bfb8e52fa4024e27ccc

Summary:
Now that v2 is fully functional, the v1 aggregator is removed.
The v2 aggregator has been renamed.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4778

Differential Revision: D13495930

Pulled By: abhimadan

fbshipit-source-id: 9d69500a60a283e79b6c4fa938fc68a8aa4d40d6

Summary:
options_file_number_ must be written under db::mutex_ sine its read is protected by mutex_ in ::GetLiveFiles(). However currently it is written in ::RenameTempFileToOptionsFile() which according to its contract must be called without holding db::mutex_. The patch fixes the race condition by also acquitting the mutex_ before writing options_file_number_. Also it does that only if the rename of option file is successful.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4780

Differential Revision: D13461411

Pulled By: maysamyabandeh

fbshipit-source-id: 2d5bae96a1f3e969ef2505b737cf2d7ae749787b