Summary:
It's easy to cause coredump when closing ColumnFamilyHandle with unreleased iterators, especially iterators release is controlled by java GC when using JNI.

This patch fixed concurrent CF iteration and drop, we let iterators(actually SuperVersion) hold a ColumnFamilyData reference to prevent the CF from being released too early.

fixed https://github.com/facebook/rocksdb/issues/5982
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6147

Differential Revision: D18926378

fbshipit-source-id: 1dff6d068c603d012b81446812368bfee95a5e15

Summary:
**Summary:**
This PR fixes two unordered_write related issues:
- ingestion job may skip the necessary memtable flush https://github.com/facebook/rocksdb/issues/6026
- compact range may cause memtable is flushed before pending unordered write finished
    1. `CompactRange` triggers memtable flush but doesn't wait for pending-writes
    2.  there are some pending writes but memtable is already flushed
    3.  the memtable related WAL is removed( note that the pending-writes were recorded in that WAL).
    4.  pending-writes write to newer created memtable
    5. there is a restart
    6. missing the previous pending-writes because WAL is removed but they aren't included in SST.

**How to solve:**
- Wait pending memtable writes before ingestion job check memtable key range
- Wait pending memtable writes before flush memtable.
**Note that: `CompactRange` calls `RangesOverlapWithMemtables` too without waiting for pending waits, but I'm not sure whether it affects the correctness.**

**Test Plan:**
make check
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6113

Differential Revision: D18895674

Pulled By: maysamyabandeh

fbshipit-source-id: da22b4476fc7e06c176020e7cc171eb78189ecaf

Summary:
`low_pri_write_rate_limiter_` is not being used. Removing. `WriteController` has an internal low_pri rate limiter which is the real rate limiter for low-pri writes.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6068

Test Plan: make

Differential Revision: D18664120

fbshipit-source-id: dfe3e4de033cf3522b67781b383aad7d0936034c

Summary:
Use db mutex to protect the execution of Version::GetColumnFamilyMetaData()
called in DBImpl::GetColumnFamilyMetaData().
Without mutex, GetColumnFamilyMetaData() races with MarkFilesBeingCompacted()
for access to FileMetaData::being_compacted.
Other than mutex, there are several more alternatives.

- Make FileMetaData::being_compacted an atomic variable. This will make
  FileMetaData non-copy-able.

- Separate being_compacted from FileMetaData. This requires re-organizing data
  structures that are already used in many places.

Test Plan (dev server):
```
make check
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6056

Differential Revision: D18620488

Pulled By: riversand963

fbshipit-source-id: 87f89660b5d5e2ab4ef7962b7b2a7d00e346aa3b

Summary:
The new DB::MultiGet() doesn't validate input for num_keys > 1 and GCC-9 complains about it. Fix it by directly return when num_keys == 0
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6054

Test Plan: Build with GCC-9 and see it passes.

Differential Revision: D18608958

fbshipit-source-id: 1c279aff3c7fe6e9d5a6d085ed02550ecea4fdb2

Summary:
Add a new API that allows a user to call MultiGet specifying multiple keys belonging to different column families. This is mainly useful for users who want to do a consistent read of keys across column families, with the added performance benefits of batching and returning values using PinnableSlice.

As part of this change, the code in the original multi-column family MultiGet for acquiring the super versions has been refactored into a separate function that can be used by both, the batching and the non-batching versions of MultiGet.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5816

Test Plan:
make check
make asan_check
asan_crash_test

Differential Revision: D18408676

Pulled By: anand1976

fbshipit-source-id: 933e7bec91dd70e7b633be4ff623a1116cc28c8d

Summary:
Adding a new API to db.h that allows users to get file_creation_time of the oldest file in the DB.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5948

Test Plan: Added unit test.

Differential Revision: D18056151

Pulled By: vjnadimpalli

fbshipit-source-id: 448ec9d34cb6772e1e5a62db399ace00dcbfbb5d

Summary:
RocksDB has a MultiGet() API that implements batched key lookup for higher performance (https://github.com/facebook/rocksdb/blob/master/include/rocksdb/db.h#L468). Currently, batching is implemented in BlockBasedTableReader::MultiGet() for SST file lookups. One of the ways it improves performance is by pipelining bloom filter lookups (by prefetching required cachelines for all the keys in the batch, and then doing the probe) and thus hiding the cache miss latency. The same concept can be extended to the memtable as well. This PR involves implementing a pipelined bloom filter lookup in DynamicBloom, and implementing MemTable::MultiGet() that can leverage it.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5818

Test Plan:
Existing tests

Performance Test:
Ran the below command which fills up the memtable and makes sure there are no flushes and then call multiget. Ran it on master and on the new change and see atleast 1% performance improvement across all the test runs I did. Sometimes the improvement was upto 5%.

TEST_TMPDIR=/data/users/$USER/benchmarks/feature/ numactl -C 10 ./db_bench -benchmarks="fillseq,multireadrandom" -num=600000 -compression_type="none" -level_compaction_dynamic_level_bytes -write_buffer_size=200000000 -target_file_size_base=200000000 -max_bytes_for_level_base=16777216 -reads=90000 -threads=1 -compression_type=none -cache_size=4194304000 -batch_size=32 -disable_auto_compactions=true -bloom_bits=10 -cache_index_and_filter_blocks=true -pin_l0_filter_and_index_blocks_in_cache=true -multiread_batched=true -multiread_stride=4 -statistics -memtable_whole_key_filtering=true -memtable_bloom_size_ratio=10

Differential Revision: D17578869

Pulled By: vjnadimpalli

fbshipit-source-id: 23dc651d9bf49db11d22375bf435708875a1f192

Summary:
Fixing crash. Full story in issue: https://github.com/facebook/rocksdb/issues/5878
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5879

Differential Revision: D17812299

Pulled By: anand1976

fbshipit-source-id: 14e5a4fc502ade974583da9692d0ed6e5014613a

Summary:
Further apply formatter to more recent commits.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5830

Test Plan: Run all existing tests.

Differential Revision: D17488031

fbshipit-source-id: 137458fd94d56dd271b8b40c522b03036943a2ab

Summary:
purge_queue_ maybe contains thousands sst files, for example manual compact a range. If full scan is triggered at the same time and the total sst files number is large, RocksDB will be blocked at https://github.com/facebook/rocksdb/blob/master/db/db_impl_files.cc#L150 for several seconds. In our environment we have 140,000 sst files and the manual compaction delete about 1000 sst files, it blocked about 2 minutes.

Commandeering https://github.com/facebook/rocksdb/issues/5290.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5796

Differential Revision: D17357775

Pulled By: riversand963

fbshipit-source-id: 20eacca917355b8de975ccc7b1c9a3e7bd5b201a

Summary:
Manual compaction may bring in very high load because sometime the amount of data involved in a compaction could be large, which may affect online service. So it would be good if the running compaction making the server busy can be stopped immediately. In this implementation, stopping manual compaction condition is only checked in slow process. We let deletion compaction and trivial move go through.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/3971

Test Plan: add tests at more spots.

Differential Revision: D17369043

fbshipit-source-id: 575a624fb992ce0bb07d9443eb209e547740043c

Summary:
For our default block cache, each additional entry has extra memory overhead. It include LRUHandle (72 bytes currently) and the cache key (two varint64, file id and offset). The usage is not negligible. For example for block_size=4k, the overhead accounts for an extra 2% memory usage for the cache. The patch charging the cache for the extra usage, reducing untracked memory usage outside block cache. The feature is enabled by default and can be disabled by passing kDontChargeCacheMetadata to the cache constructor.
This PR builds up on https://github.com/facebook/rocksdb/issues/4258
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5797

Test Plan:
- Existing tests are updated to either disable the feature when the test has too much dependency on the old way of accounting the usage or increasing the cache capacity to account for the additional charge of metadata.
- The Usage tests in cache_test.cc are augmented to test the cache usage under kFullChargeCacheMetadata.

Differential Revision: D17396833

Pulled By: maysamyabandeh

fbshipit-source-id: 7684ccb9f8a40ca595e4f5efcdb03623afea0c6f

Summary:
file_reader_writer.h and .cc contain several files and helper function, and it's hard to navigate. Separate it to multiple files and put them under file/
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5803

Test Plan: Build whole project using make and cmake.

Differential Revision: D17374550

fbshipit-source-id: 10efca907721e7a78ed25bbf74dc5410dea05987

Summary:
Currently IngestExternalFile() fails when its input files' ranges overlap. This condition doesn't need to hold for files that are to be ingested in L0, though.

This commit allows overlapping files and forces their target level to L0.

Additionally, ingest job's completion is logged to EventLogger, analogous to flush and compaction jobs.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5539

Differential Revision: D17370660

Pulled By: riversand963

fbshipit-source-id: 749a3899b17d1be267a5afd5b0a99d96b38ab2f3

Summary:
Move definition and implementation for ArenaWrappedDBIter into its own .h/.cc files. Also, change inlining of functions to better comply with the Google C++ style guide.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5801

Test Plan: make check

Differential Revision: D17371012

Pulled By: anand1976

fbshipit-source-id: c1361abc2851575111e357a63d88be3b3d6cb341

Summary:
Each DB has a globally unique ID. A DB can be physically copied around, or backed-up and restored, and the users should be identify the same DB. This unique ID right now is stored as plain text in file IDENTITY under the DB directory. This approach introduces at least two problems: (1) the file is not checksumed; (2) the source of truth of a DB is the manifest file, which can be copied separately from IDENTITY file, causing the DB ID to be wrong.
The goal of this PR is solve this problem by moving the  DB ID to manifest. To begin with we will write to both identity file and manifest. Write to Manifest is controlled via the flag write_dbid_to_manifest in Options and default is false.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5725

Test Plan: Added unit tests.

Differential Revision: D16963840

Pulled By: vjnadimpalli

fbshipit-source-id: 8a86a4c8c82c716003c40fd6b9d2d758030d92e9

Summary:
Before this PR, when the number of column families involved in a file ingestion exceeds 2, a bug in the looping logic prevents correct file number being assigned to each ingestion job.
Also skip deleting non-existing hard links during cleanup-after-failure.

Test plan (devserver)
```
$COMPILE_WITH_ASAN=1 make all
$./external_sst_file_test --gtest_filter=ExternalSSTFileTest/ExternalSSTFileTest.IngestFilesIntoMultipleColumnFamilies_*/*
$makke check
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5760

Differential Revision: D17142982

Pulled By: riversand963

fbshipit-source-id: 06c1847a4e7a402647bcf28d124e70f2a0f9daf6

Summary:
MyRocks currently sets `max_write_buffer_number_to_maintain` in order to maintain enough history for transaction conflict checking. The effectiveness of this approach depends on the size of memtables. When memtables are small, it may not keep enough history; when memtables are large, this may consume too much memory.
We are proposing a new way to configure memtable list history: by limiting the memory usage of immutable memtables. The new option is `max_write_buffer_size_to_maintain` and it will take precedence over the old `max_write_buffer_number_to_maintain` if they are both set to non-zero values. The new option accounts for the total memory usage of flushed immutable memtables and mutable memtable. When the total usage exceeds the limit, RocksDB may start dropping immutable memtables (which is also called trimming history), starting from the oldest one.
The semantics of the old option actually works both as an upper bound and lower bound. History trimming will start if number of immutable memtables exceeds the limit, but it will never go below (limit-1) due to history trimming.
In order the mimic the behavior with the new option, history trimming will stop if dropping the next immutable memtable causes the total memory usage go below the size limit. For example, assuming the size limit is set to 64MB, and there are 3 immutable memtables with sizes of 20, 30, 30. Although the total memory usage is 80MB > 64MB, dropping the oldest memtable will reduce the memory usage to 60MB < 64MB, so in this case no memtable will be dropped.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5022

Differential Revision: D14394062

Pulled By: miasantreble

fbshipit-source-id: 60457a509c6af89d0993f988c9b5c2aa9e45f5c5

Summary:
Right now VerifyChecksum() doesn't do read-ahead. In some use cases, users won't be able to achieve good performance. With this change, by default, RocksDB will do a default readahead, and users will be able to overwrite the readahead size by passing in a ReadOptions.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5713

Test Plan: Add a new unit test.

Differential Revision: D16860874

fbshipit-source-id: 0cff0fe79ac855d3d068e6ccd770770854a68413

Summary:
Add a command in ldb so that users can print out tombstones in SST files.
In order to test the code, change the interface of LDBCommandRunner::RunCommand() so that it doesn't return from the program, but return the status code.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5615

Test Plan: Add a new unit test

Differential Revision: D16550326

fbshipit-source-id: 88ddfe6984bdcbb3a528abdd115089df09eba52e

Summary:
This is a new API added to db.h to allow for fetching all merge operands associated with a Key. The main motivation for this API is to support use cases where doing a full online merge is not necessary as it is performance sensitive. Example use-cases:
1. Update subset of columns and read subset of columns -
Imagine a SQL Table, a row is encoded as a K/V pair (as it is done in MyRocks). If there are many columns and users only updated one of them, we can use merge operator to reduce write amplification. While users only read one or two columns in the read query, this feature can avoid a full merging of the whole row, and save some CPU.
2. Updating very few attributes in a value which is a JSON-like document -
Updating one attribute can be done efficiently using merge operator, while reading back one attribute can be done more efficiently if we don't need to do a full merge.
----------------------------------------------------------------------------------------------------
API :
Status GetMergeOperands(
      const ReadOptions& options, ColumnFamilyHandle* column_family,
      const Slice& key, PinnableSlice* merge_operands,
      GetMergeOperandsOptions* get_merge_operands_options,
      int* number_of_operands)

Example usage :
int size = 100;
int number_of_operands = 0;
std::vector<PinnableSlice> values(size);
GetMergeOperandsOptions merge_operands_info;
db_->GetMergeOperands(ReadOptions(), db_->DefaultColumnFamily(), "k1", values.data(), merge_operands_info, &number_of_operands);

Description :
Returns all the merge operands corresponding to the key. If the number of merge operands in DB is greater than merge_operands_options.expected_max_number_of_operands no merge operands are returned and status is Incomplete. Merge operands returned are in the order of insertion.
merge_operands-> Points to an array of at-least merge_operands_options.expected_max_number_of_operands and the caller is responsible for allocating it. If the status returned is Incomplete then number_of_operands will contain the total number of merge operands found in DB for key.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5604

Test Plan:
Added unit test and perf test in db_bench that can be run using the command:
./db_bench -benchmarks=getmergeoperands --merge_operator=sortlist

Differential Revision: D16657366

Pulled By: vjnadimpalli

fbshipit-source-id: 0faadd752351745224ee12d4ae9ef3cb529951bf

Summary:
In some cases, we don't have to get really accurate number. Something like 10% off is fine, we can create a new option for that use case. In this case, we can calculate size for full files first, and avoid estimation inside SST files if full files got us a huge number. For example, if we already covered 100GB of data, we should be able to skip partial dives into 10 SST files of 30MB.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5609

Differential Revision: D16433481

Pulled By: elipoz

fbshipit-source-id: 5830b31e1c656d0fd3a00d7fd2678ddc8f6e601b

Summary:
The `TransactionTest.MultiGetBatchedTest` were failing with unprepared batches because we were not using the correct callbacks. Override MultiGet to pass down the correct ReadCallback. A similar problem is also fixed in WritePrepared.

This PR also fixes an issue similar to (https://github.com/facebook/rocksdb/pull/5147), but for MultiGet instead of Get.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5634

Differential Revision: D16552674

Pulled By: lth

fbshipit-source-id: 736eaf8e919c6b13d5f5655b1c0d36b57ad04804

Summary:
The new DB::GetApproximateSizes with SizeApproximationOptions argument, which allows to add more options/knobs to the DB::GetApproximateSizes call (beyond only the include_flags)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5626

Differential Revision: D16496913

Pulled By: elipoz

fbshipit-source-id: ee8c6c182330a285fa056ecfc3905a592b451720

Summary:
In previous https://github.com/facebook/rocksdb/issues/5079, we added user-specified timestamp to `DB::Get()` and `DB::Put()`. Limitation is that these two functions may cause extra memory allocation and key copy. The reason is that `WriteBatch` does not allocate extra memory for timestamps because it is not aware of timestamp size, and we did not provide an API to assign/update timestamp of each key within a `WriteBatch`.
We address these issues in this PR by doing the following.
1. Add a `timestamp_size_` to `WriteBatch` so that `WriteBatch` can take timestamps into account when calling `WriteBatch::Put`, `WriteBatch::Delete`, etc.
2. Add APIs `WriteBatch::AssignTimestamp` and `WriteBatch::AssignTimestamps` so that application can assign/update timestamps for each key in a `WriteBatch`.
3. Avoid key copy in `GetImpl` by adding new constructor to `LookupKey`.

Test plan (on devserver):
```
$make clean && COMPILE_WITH_ASAN=1 make -j32 all
$./db_basic_test --gtest_filter=Timestamp/DBBasicTestWithTimestampWithParam.PutAndGet/*
$make check
```
If the API extension looks good, I will add more unit tests.

Some simple benchmark using db_bench.
```
$rm -rf /dev/shm/dbbench/* && TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillseq,readrandom -num=1000000
$rm -rf /dev/shm/dbbench/* && TEST_TMPDIR=/dev/shm ./db_bench -benchmarks=fillrandom -num=1000000 -disable_wal=true
```
Master is at a78503bd.
```
|        | readrandom | fillrandom |
| master | 15.53 MB/s | 25.97 MB/s |
| PR5502 | 16.70 MB/s | 25.80 MB/s |
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5502

Differential Revision: D16340894

Pulled By: riversand963

fbshipit-source-id: 51132cf792be07d1efc3ac33f5768c4ee2608bb8

Summary:
There are a number of fixes in this PR (with most bugs found via the added stress tests):
1. Re-enable reseek optimization. This was initially disabled to avoid infinite loops in https://github.com/facebook/rocksdb/pull/3955 but this can be resolved by remembering not to reseek after a reseek has already been done. This problem only affects forward iteration in `DBIter::FindNextUserEntryInternal`, as we already disable reseeking in `DBIter::FindValueForCurrentKeyUsingSeek`.
2. Verify that ReadOption.snapshot can be safely used for iterator creation. Some snapshots would not give correct results because snaphsot validation would not be enforced, breaking some assumptions in Prev() iteration.
3. In the non-snapshot Get() case, reads done at `LastPublishedSequence` may not be enough, because unprepared sequence numbers are not published. Use `std::max(published_seq, max_visible_seq)` to do lookups instead.
4. Add stress test to test reading own writes.
5. Minor bug in the allow_concurrent_memtable_write case where we forgot to pass in batch_per_txn_.
6. Minor performance optimization in `CalcMaxUnpreparedSequenceNumber` by assigning by reference instead of value.
7. Add some more comments everywhere.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5573

Differential Revision: D16276089

Pulled By: lth

fbshipit-source-id: 18029c944eb427a90a87dee76ac1b23f37ec1ccb

Summary:
Refresh of the earlier change here - https://github.com/facebook/rocksdb/issues/5135

This is a review request for code change needed for - https://github.com/facebook/rocksdb/issues/3469
"Add support for taking snapshot of a column family and creating column family from a given CF snapshot"

We have an implementation for this that we have been testing internally. We have two new APIs that together provide this functionality.

(1) ExportColumnFamily() - This API is modelled after CreateCheckpoint() as below.
// Exports all live SST files of a specified Column Family onto export_dir,
// returning SST files information in metadata.
// - SST files will be created as hard links when the directory specified
//   is in the same partition as the db directory, copied otherwise.
// - export_dir should not already exist and will be created by this API.
// - Always triggers a flush.
virtual Status ExportColumnFamily(ColumnFamilyHandle* handle,
                                  const std::string& export_dir,
                                  ExportImportFilesMetaData** metadata);

Internally, the API will DisableFileDeletions(), GetColumnFamilyMetaData(), Parse through
metadata, creating links/copies of all the sst files, EnableFileDeletions() and complete the call by
returning the list of file metadata.

(2) CreateColumnFamilyWithImport() - This API is modeled after IngestExternalFile(), but invoked only during a CF creation as below.
// CreateColumnFamilyWithImport() will create a new column family with
// column_family_name and import external SST files specified in metadata into
// this column family.
// (1) External SST files can be created using SstFileWriter.
// (2) External SST files can be exported from a particular column family in
//     an existing DB.
// Option in import_options specifies whether the external files are copied or
// moved (default is copy). When option specifies copy, managing files at
// external_file_path is caller's responsibility. When option specifies a
// move, the call ensures that the specified files at external_file_path are
// deleted on successful return and files are not modified on any error
// return.
// On error return, column family handle returned will be nullptr.
// ColumnFamily will be present on successful return and will not be present
// on error return. ColumnFamily may be present on any crash during this call.
virtual Status CreateColumnFamilyWithImport(
    const ColumnFamilyOptions& options, const std::string& column_family_name,
    const ImportColumnFamilyOptions& import_options,
    const ExportImportFilesMetaData& metadata,
    ColumnFamilyHandle** handle);

Internally, this API creates a new CF, parses all the sst files and adds it to the specified column family, at the same level and with same sequence number as in the metadata. Also performs safety checks with respect to overlaps between the sst files being imported.

If incoming sequence number is higher than current local sequence number, local sequence
number is updated to reflect this.

Note, as the sst files is are being moved across Column Families, Column Family name in sst file
will no longer match the actual column family on destination DB. The API does not modify Column
Family name or id in the sst files being imported.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5495

Differential Revision: D16018881

fbshipit-source-id: 9ae2251025d5916d35a9fc4ea4d6707f6be16ff9

Summary:
Sample info log output from db_bench:
In-memory:
```
2019/07/12-21:39:19.478490 7fa01b3f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:39:19.478633 7fa01b3f5700 [_impl/db_impl.cc:753] Storing 145 stats with timestamp 1562992759 to in-memory stats history
2019/07/12-21:39:19.478670 7fa01b3f5700 [_impl/db_impl.cc:766] [Pre-GC] In-memory stats history size: 1051218 bytes, slice count: 103
2019/07/12-21:39:19.478704 7fa01b3f5700 [_impl/db_impl.cc:775] [Post-GC] In-memory stats history size: 1051218 bytes, slice count: 102
```
On-disk:
```
2019/07/12-21:48:53.862548 7f24943f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:48:53.862553 7f24943f5700 [_impl/db_impl.cc:709] Reading 145 stats from statistics
2019/07/12-21:48:53.862852 7f24943f5700 [_impl/db_impl.cc:737] Writing 145 stats with timestamp 1562993333 to persistent stats CF succeeded
```
```
2019/07/12-21:48:51.861711 7f24943f5700 [_impl/db_impl.cc:702] ------- PERSISTING STATS -------
2019/07/12-21:48:51.861729 7f24943f5700 [_impl/db_impl.cc:709] Reading 145 stats from statistics
2019/07/12-21:48:51.861921 7f24943f5700 [_impl/db_impl.cc:732] Writing to persistent stats CF failed -- Result incomplete: Write stall
...
2019/07/12-21:48:51.873032 7f2494bf6700 [WARN] [lumn_family.cc:749] [default] Stopping writes because we have 2 immutable memtables (waiting for flush), max_write_buffer_number is set to 2
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5566

Differential Revision: D16258187

Pulled By: miasantreble

fbshipit-source-id: 292497099b941418590ed4312411bee36e244dc5

Summary:
1. Cleanup WAL trash files on open
2. Don't apply deletion rate limit if WAL dir is different from db dir
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5520

Test Plan: Add new unit tests and make check

Differential Revision: D16096750

Pulled By: anand1976

fbshipit-source-id: 6f07858ad864b754b711db416f0389c45ede599b

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/5526

Test Plan:
OPT=-g V=1 make J=1 unity_test -j32
make clean && make -j32

Differential Revision: D16079315

Pulled By: HaoyuHuang

fbshipit-source-id: 294ab439cf0db8dd5da44e30eabf0cbb2bb8c4f6

Summary:
It it not safe to assume application had sync the SST file before ingest it into DB. Also the directory to put the ingested file needs to be fsync, otherwise the file can be lost. For integrity of RocksDB we need to sync the ingested file and directory before apply the change to manifest.

Also syncing after writing global sequence when write_global_seqno=true was removed in https://github.com/facebook/rocksdb/issues/4172. Adding it back.

Fixes https://github.com/facebook/rocksdb/issues/5287.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5435

Test Plan:
Test ingest file with ldb command and observe fsync/fdatasync in strace output. Tried both move_files=true and move_files=false.
https://gist.github.com/yiwu-arbug/650a4023f57979056d83485fa863bef9

More test suggestions are welcome.

Differential Revision: D15941675

Pulled By: riversand963

fbshipit-source-id: 389533f3923065a96df2cdde23ff4724a1810d78

Summary:
This PR adds more callers for table readers. These information are only used for block cache analysis so that we can know which caller accesses a block.
1. It renames the BlockCacheLookupCaller to TableReaderCaller as passing the caller from upstream requires changes to table_reader.h and TableReaderCaller is a more appropriate name.
2. It adds more table reader callers in table/table_reader_caller.h, e.g., kCompactionRefill, kExternalSSTIngestion, and kBuildTable.

This PR is long as it requires modification of interfaces in table_reader.h, e.g., NewIterator.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5454

Test Plan: make clean && COMPILE_WITH_ASAN=1 make check -j32.

Differential Revision: D15819451

Pulled By: HaoyuHuang

fbshipit-source-id: b6caa704c8fb96ddd15b9a934b7e7ea87f88092d

Summary:
`DBImplSecondary` calls `CheckConsistency()` during open. In the past, `DBImplSecondary` did not override this function thus `DBImpl::CheckConsistency()` is called.
The following can happen. The secondary instance is performing consistency check which calls `GetFileSize(file_path)` but the file at `file_path` is deleted by the primary instance. `DBImpl::CheckConsistency` does not account for this and fails the consistency check. This is undesirable. The solution is that, we call `DBImpl::CheckConsistency()` first. If it passes, then we are good. If not, we give it a second chance and handles the case of file(s) being deleted.

Test plan (on dev server):
```
$make clean && make -j20 all
$./db_secondary_test
```
All other existing unit tests must pass as well.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5469

Differential Revision: D15861845

Pulled By: riversand963

fbshipit-source-id: 507d72392508caed3cd003bb2e2aa43f993dd597

Summary:
This PR continues the work in https://github.com/facebook/rocksdb/pull/4748 and https://github.com/facebook/rocksdb/pull/4535 by adding a new DBOption `persist_stats_to_disk` which instructs RocksDB to persist stats history to RocksDB itself. When statistics is enabled, and  both options `stats_persist_period_sec` and `persist_stats_to_disk` are set, RocksDB will periodically write stats to a built-in column family in the following form: key -> (timestamp in microseconds)#(stats name), value -> stats value. The existing API `GetStatsHistory` will detect the current value of `persist_stats_to_disk` and either read from in-memory data structure or from the hidden column family on disk.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5046

Differential Revision: D15863138

Pulled By: miasantreble

fbshipit-source-id: bb82abdb3f2ca581aa42531734ac799f113e931b

Summary:
It seems like CF Options are not properly validated  when creating a new column family with `CreateColumnFamily` API; only a selected few checks are done. Calling `ColumnFamilyData::ValidateOptions`, which is the single source for all CFOptions validations,  will help fix this. (`ColumnFamilyData::ValidateOptions` is already called at the time of `DB::Open`).

**Test Plan:**
Added a new test: `DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions`
```
TEST_TMPDIR=/dev/shm ./db_test --gtest_filter=DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions
```
Also ran gtest-parallel to make sure the new test is not flaky.
```
TEST_TMPDIR=/dev/shm ~/gtest-parallel/gtest-parallel ./db_test --gtest_filter=DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions --repeat=10000
[10000/10000] DBTest.CreateColumnFamilyShouldFailOnIncompatibleOptions (15 ms)
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5453

Differential Revision: D15816851

Pulled By: sagar0

fbshipit-source-id: 9e702b9850f5c4a7e0ef8d39e1e6f9b81e7fe1e5

Summary:
This PR integrates the block cache tracer class into db_impl.cc.
db_impl.cc contains a member variable of AtomicBlockCacheTraceWriter class and passes its reference to the block_based_table_reader.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5433

Differential Revision: D15728016

Pulled By: HaoyuHuang

fbshipit-source-id: 23d5659e8c82d556833dcc1a5558aac8c1f7db71

Summary:
If a memtable definitely covers a key, there isn't a need to check older memtables.
We can skip them by checking the earliest sequence number.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4941

Differential Revision: D13932666

fbshipit-source-id: b9d52f234b8ad9dd3bf6547645cd457175a3ca9b

Summary:
To avoid deadlock mutex_ should never be acquired before log_write_mutex_. The patch documents that and also fixes one case in ::FlushWAL that acquires mutex_ through ::WriteStatusCheck when it already holds lock on log_write_mutex_.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5437

Differential Revision: D15749722

Pulled By: maysamyabandeh

fbshipit-source-id: f57b69c44b4b80cc6d7ddf3d3fdf4a9eb5a5a45a

Summary:
BlockCacheLookupContext only contains the caller for now.
We will trace block accesses at five places:
1. BlockBasedTable::GetFilter.
2. BlockBasedTable::GetUncompressedDict.
3. BlockBasedTable::MaybeReadAndLoadToCache. (To trace access on data, index, and range deletion block.)
4. BlockBasedTable::Get. (To trace the referenced key and whether the referenced key exists in a fetched data block.)
5. BlockBasedTable::MultiGet. (To trace the referenced key and whether the referenced key exists in a fetched data block.)

We create the context at:
1. BlockBasedTable::Get. (kUserGet)
2. BlockBasedTable::MultiGet. (kUserMGet)
3. BlockBasedTable::NewIterator. (either kUserIterator, kCompaction, or external SST ingestion calls this function.)
4. BlockBasedTable::Open. (kPrefetch)
5. Index/Filter::CacheDependencies. (kPrefetch)
6. BlockBasedTable::ApproximateOffsetOf. (kCompaction or kUserApproximateSize).

I loaded 1 million key-value pairs into the database and ran the readrandom benchmark with a single thread. I gave the block cache 10 GB to make sure all reads hit the block cache after warmup. The throughput is comparable.
Throughput of this PR: 231334 ops/s.
Throughput of the master branch: 238428 ops/s.

Experiment setup:
RocksDB:    version 6.2
Date:       Mon Jun 10 10:42:51 2019
CPU:        24 * Intel Core Processor (Skylake)
CPUCache:   16384 KB
Keys:       20 bytes each
Values:     100 bytes each (100 bytes after compression)
Entries:    1000000
Prefix:    20 bytes
Keys per prefix:    0
RawSize:    114.4 MB (estimated)
FileSize:   114.4 MB (estimated)
Write rate: 0 bytes/second
Read rate: 0 ops/second
Compression: NoCompression
Compression sampling rate: 0
Memtablerep: skip_list
Perf Level: 1

Load command: ./db_bench --benchmarks="fillseq" --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000

Run command: ./db_bench --benchmarks="readrandom,stats" --use_existing_db --threads=1 --duration=120 --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --statistics --cache_index_and_filter_blocks --cache_size=10737418240 --disable_auto_compactions=1 --disable_wal=1 --compression_type=none --min_level_to_compress=-1 --compression_ratio=1 --num=1000000 --duration=120

TODOs:
1. Create a caller for external SST file ingestion and differentiate the callers for iterator.
2. Integrate tracer to trace block cache accesses.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5421

Differential Revision: D15704258

Pulled By: HaoyuHuang

fbshipit-source-id: 4aa8a55f8cb1576ffb367bfa3186a91d8f06d93a