[Java] Enable filluniquerandom, readseq, BloomFilter, and 70+ command-line options to DbBenchmark.java

Summary:
* Add filluniquerandom
* Add readseq, implemented using iterator.
* Realize most command-line-arguments from db_bench.cc (70+).
* Some code are commented out as some of the options in Options
  not yet have Java bindings.
* Add default option to DbBenchmark.
* RocksDB will now take the ownership of all c++ raw-pointers from Options, which includes a c++ raw-pointer for Filter.

Test Plan: ./jdb_bench.sh --db=/tmp/rocksjava-bench/db --num_levels=6 --key_size=20 --prefix_size=20 --keys_per_prefix=0 --value_size=100 --block_size=4096 --cache_size=17179869184 --cache_numshardbits=6 --compression_ratio=1 --min_level_to_compress=-1 --disable_seek_compaction=1 --hard_rate_limit=2 --write_buffer_size=134217728 --max_write_buffer_number=2 --level0_file_num_compaction_trigger=8 --target_file_size_base=134217728 --max_bytes_for_level_base=1073741824 --disable_wal=0 --wal_dir=/tmp/rocksjava-bench/wal --sync=0 --disable_data_sync=1 --verify_checksum=1 --delete_obsolete_files_period_micros=314572800 --max_grandparent_overlap_factor=10 --max_background_compactions=4 --max_background_flushes=0 --level0_slowdown_writes_trigger=16 --level0_stop_writes_trigger=24 --statistics=0 --stats_per_interval=0 --stats_interval=1048576 --histogram=0 --use_plain_table=1 --open_files=-1 --mmap_read=1 --mmap_write=0 --memtablerep=prefix_hash --bloom_bits=10 --bloom_locality=1 --perf_level=0 --benchmarks=filluniquerandom,readseq,readrandom --use_existing_db=0 --threads=4

Reviewers: haobo, dhruba, sdong, ankgup87, rsumbaly, swapnilghike, zzbennett

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18267

Summary:
I'm getting lots of e-mails with CompactionInputErrorParanoid failing. Most recent example early morning today was: http://ci-builds.fb.com/job/rocksdb_valgrind/562/consoleFull

I'm putting a stop to these e-mails. I investigated why the test is flakey and it turns out it's because of non-determinsim of compaction scheduling. If there is a compaction after the last flush, CorruptFile will corrupt the compacted file instead of file at level 0 (as it assumes). That makes `Check(9, 9)` fail big time.

I also saw some errors with table file getting outputed to >= 1 levels instead of 0. Also fixed that.

Test Plan: Ran corruption_test 100 times without a failure. Previously it usually failed at 10th occurrence.

Reviewers: dhruba, haobo, ljin

Reviewed By: ljin

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18285

Summary: Sometimes, our tests fail because of normal `assert` call. It would be helpful to see stack trace in that case, too.

Test Plan: Added `assert(false)` and verified it prints out stack trace

Reviewers: haobo, dhruba, sdong, ljin, yhchiang

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18291

Summary:
Currently, whenever DB Verification fails we bail out by calling `exit(1)`. This is kind of bad since it causes unclean shutdown and spew of error log messages like:

    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument
    05:03:27 pthread lock: Invalid argument

This diff adds a new parameter that is set to true when verification fails. It can then use the parameter to bail out safely.

Test Plan: Casued artificail failure. Verified that exit was clean.

Reviewers: dhruba, haobo, ljin

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18243

Summary:
Add Java bindings and Java tests for 30+ rocksdb::Options.  Codes are
machine-genearted based on include/rocksdb/options.h with manual-polishment.

Test Plan:
make rocksdbjava
make jtest

Reviewers: haobo, dhruba, sdong, ankgup87, rsumbaly, swapnilghike, zzbennett

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18273

Summary: IterKey set buffer_size_ to a wrong initial value, causing it to always allocate values from heap instead of stack if the key size is smaller. Fix it.

Test Plan: make all check

Reviewers: haobo, ljin

Reviewed By: haobo

CC: igor, dhruba, yhchiang, leveldb

Differential Revision: https://reviews.facebook.net/D18279

Summary: While debugging Mac-only issue with ThreadLocalPtr, this was very useful. Let's print out stack trace in MAC OS, too.

Test Plan: Verified that somewhat useful stack trace was generated on mac. Will run PrintStack() on linux, too.

Reviewers: ljin, haobo

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18189

Summary: In this patch, two new DB properties are defined: rocksdb.num-immutable-mem-table and rocksdb.num-entries-imm-mem-tables, from where number of entries in mem tables can be exposed to users

Test Plan:
Cover the codes in db_test
make all check

Reviewers: haobo, ljin, igor

Reviewed By: igor

CC: nkg-, igor, yhchiang, dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D18207

Summary: Get rid of the devil. Probably won't impact anything on the perf side.

Test Plan: make all check

Reviewers: igor, haobo, sdong, yhchiang

Reviewed By: haobo

CC: leveldb, dhruba

Differential Revision: https://reviews.facebook.net/D18153

Summary:
make singleton a static member instead of dynamic object. This should
also avoid the race on unique_ptr

Test Plan: make all check

Reviewers: igor, haobo, sdong

Reviewed By: igor

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18177

Summary:
This is a temp solution to expose index sizes to users from PlainTableReader before we persistent them to files.
In this patch, the memory consumption of indexes used by PlainTableReader will be reported as two user defined properties, so that users can monitor them.

Test Plan:
Add a unit test.
make all check`

Reviewers: haobo, ljin

Reviewed By: haobo

CC: nkg-, yhchiang, igor, ljin, dhruba, leveldb

Differential Revision: https://reviews.facebook.net/D18195

This reverts commit ddafceb6.

Summary:
Using ThreadLocalPtr as a flag to determine if a mutex is locked or not enables us to implement AssertNotHeld(). It also makes AssertHeld() actually correct.

I had to remove port::Mutex as a dependency for util/thread_local.h, but that's fine since we can just use std::mutex :)

Test Plan: make check

Reviewers: ljin, dhruba, haobo, sdong, yhchiang

Reviewed By: ljin

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18171

[Java] Add bloom filter JNI bindings

Summary:
This will enable people using TTL DB to do so with multiple column families. They can also specify different TTLs for each one.

TODO: Implement CreateColumnFamily() in TTL world.

Test Plan: Added a very simple sanity test.

Reviewers: dhruba, haobo, ljin, sdong, yhchiang

Reviewed By: haobo

CC: leveldb, alberts

Differential Revision: https://reviews.facebook.net/D17859

Summary: Fix the sigfault when running sst_dump on v2.6 db.

Test Plan:
    git checkout bba6595b
    make clean
    make db_bench
    ./db_bench --db=/tmp/some/db --benchmarks=fillseq
    arc patch D18039
    make clean
    make sst_dump
    ./sst_dump --file=/tmp/some/db --command=check

Reviewers: igor, haobo, sdong

Reviewed By: sdong

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18039

Summary: Calling Fsync()/Sync() on a file should give the guarantee that whatever you written to the file is now persisted. This is currently not the case, since we might have some data left in application cache as we do Fsync()/Sync(). For example, BuildTable() calls Fsync() without the flush, assuming all sst data is now persisted, but it's actually not. This may result in big inconsistencies.

Test Plan: no test

Reviewers: sdong, dhruba, haobo, ljin, yhchiang

Reviewed By: sdong

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18159

Summary: Add Java binding and test for rocksdb::ReadOptions.

Test Plan:
make rocksdbjava
make jtest

Reviewers: haobo, dhruba, sdong, ankgup87, rsumbaly, swapnilghike, zzbennett

Reviewed By: haobo

CC: leveldb

Differential Revision: https://reviews.facebook.net/D18129

Summary:
Add Java bindings for memtables and sst format.  Specifically,
add two abstract Java classses --- MemTableConfig and SstFormatConfig.
Each MemTable / SST implementation should has its own config class
extends MemTableConfig / SstFormatConfig respectively and pass it
to Options via setMemTableConfig / setSstConfig.

Test Plan:
make rocksdbjava
make jdb_test
make jdb_bench
java/jdb_bench.sh \
  --benchmarks=fillseq,readrandom,readwhilewriting \
  --memtablerep=hash_skiplist \
  --use_plain_table=1 \
  --key_size=20 \
  --prefix_size=12 \
  --value_size=100 \
  --cache_size=17179869184 \
  --disable_wal=0 \
  --sync=0 \

Reviewers: haobo, ankgup87, sdong

Reviewed By: haobo

CC: leveldb, dhruba

Differential Revision: https://reviews.facebook.net/D17997

Also, make `benchharness.cc` not compiled into rocksdb library.

Summary: Added benchmark functionality on the lines of folly/Benchmark.h

Test Plan: Added unit tests

Reviewers: igor, haobo, sdong, ljin, yhchiang, dhruba

Reviewed By: igor

CC: leveldb

Differential Revision: https://reviews.facebook.net/D17973