Summary:
this should fix the current failing TSAN jobs:
The callstack for TSAN:
> WARNING: ThreadSanitizer: data race (pid=87440)
  Read of size 8 at 0x7d580000fce0 by thread T22 (mutexes: write M548703):
    #0 rocksdb::InternalStats::DumpCFStatsNoFileHistogram(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) db/internal_stats.cc:1204 (column_family_test+0x00000080eca7)
    #1 rocksdb::InternalStats::DumpCFStats(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) db/internal_stats.cc:1169 (column_family_test+0x0000008106d0)
    #2 rocksdb::InternalStats::HandleCFStats(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, rocksdb::Slice) db/internal_stats.cc:578 (column_family_test+0x000000810720)
    #3 rocksdb::InternalStats::GetStringProperty(rocksdb::DBPropertyInfo const&, rocksdb::Slice const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*) db/internal_stats.cc:488 (column_family_test+0x00000080670c)
    #4 rocksdb::DBImpl::DumpStats() db/db_impl.cc:625 (column_family_test+0x00000070ce9a)

>  Previous write of size 8 at 0x7d580000fce0 by main thread:
    #0 rocksdb::InternalStats::AddCFStats(rocksdb::InternalStats::InternalCFStatsType, unsigned long) db/internal_stats.h:324 (column_family_test+0x000000693bbf)
    #1 rocksdb::ColumnFamilyData::RecalculateWriteStallConditions(rocksdb::MutableCFOptions const&) db/column_family.cc:818 (column_family_test+0x000000693bbf)
    #2 rocksdb::ColumnFamilyTest_WriteStallSingleColumnFamily_Test::TestBody() db/column_family_test.cc:2563 (column_family_test+0x0000005e5a49)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4474

Differential Revision: D10262099

Pulled By: miasantreble

fbshipit-source-id: 1247973a3ca32e399b4575d3401dd5439c39efc5

Summary:
Currently statistics are supposed to be dumped to info log at intervals of `options.stats_dump_period_sec`. However the implementation choice was to bind it with compaction thread, meaning if the database has been serving very light traffic, the stats may not get dumped at all.
We decided to separate stats dumping into a new timed thread using `TimerQueue`, which is already used in blob_db. This will allow us schedule new timed tasks with more deterministic behavior.

Tested with db_bench using `--stats_dump_period_sec=20` in command line:
> LOG:2018/09/17-14:07:45.575025 7fe99fbfe700 [WARN] [db/db_impl.cc:605] ------- DUMPING STATS -------
LOG:2018/09/17-14:08:05.643286 7fe99fbfe700 [WARN] [db/db_impl.cc:605] ------- DUMPING STATS -------
LOG:2018/09/17-14:08:25.691325 7fe99fbfe700 [WARN] [db/db_impl.cc:605] ------- DUMPING STATS -------
LOG:2018/09/17-14:08:45.740989 7fe99fbfe700 [WARN] [db/db_impl.cc:605] ------- DUMPING STATS -------

LOG content:
> 2018/09/17-14:07:45.575025 7fe99fbfe700 [WARN] [db/db_impl.cc:605] ------- DUMPING STATS -------
2018/09/17-14:07:45.575080 7fe99fbfe700 [WARN] [db/db_impl.cc:606]
** DB Stats **
Uptime(secs): 20.0 total, 20.0 interval
Cumulative writes: 4447K writes, 4447K keys, 4447K commit groups, 1.0 writes per commit group, ingest: 5.57 GB, 285.01 MB/s
Cumulative WAL: 4447K writes, 0 syncs, 4447638.00 writes per sync, written: 5.57 GB, 285.01 MB/s
Cumulative stall: 00:00:0.012 H:M:S, 0.1 percent
Interval writes: 4447K writes, 4447K keys, 4447K commit groups, 1.0 writes per commit group, ingest: 5700.71 MB, 285.01 MB/s
Interval WAL: 4447K writes, 0 syncs, 4447638.00 writes per sync, written: 5.57 MB, 285.01 MB/s
Interval stall: 00:00:0.012 H:M:S, 0.1 percent
** Compaction Stats [default] **
Level    Files   Size     Score Read(GB)  Rn(GB) Rnp1(GB) Write(GB) Wnew(GB) Moved(GB) W-Amp Rd(MB/s) Wr(MB/s) Comp(sec) Comp(cnt) Avg(sec) KeyIn KeyDrop
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4382

Differential Revision: D9933051

Pulled By: miasantreble

fbshipit-source-id: 6d12bb1e4977674eea4bf2d2ac6d486b814bb2fa

Summary:
Forgot this in previous commit.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4472

Differential Revision: D10244227

Pulled By: gfosco

fbshipit-source-id: ba0cf7a2f5271f0d9f9443004e2620887cd5fd11

Summary:
- Fix DBImpl API race condition

The timeline of execution flow is as follow:
```
timeline              user_thread1                      user_thread2
t1   |     cfh = GetColumnFamilyHandleUnlocked(0)
t2   |     id1 = cfh->GetID()
t3   |                                                GetColumnFamilyHandleUnlocked(1)
t4   |     id2 = cfh->GetID()
     V
```
The original implementation return a pointer to a stateful variable, so that the return `ColumnFamilyHandle` will be changed when another thread calls `GetColumnFamilyHandleUnlocked` with different `column family id`

- Expose ColumnFamily ID to compaction event listener

- Fix the return status of `DBImpl::GetLatestSequenceForKey`
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4391

Differential Revision: D10221243

Pulled By: yiwu-arbug

fbshipit-source-id: dec60ee9ff0c8261a2f2413a8506ec1063991993

Summary:
The controller you requested could not be found. PTAL
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4466

Differential Revision: D10241358

Pulled By: yiwu-arbug

fbshipit-source-id: 99664eb286860a6c8844d50efeb0ef6f0e10dd1e

Summary: Pull Request resolved: https://github.com/facebook/rocksdb/pull/4467

Differential Revision: D10241418

Pulled By: yiwu-arbug

fbshipit-source-id: f6adbe7292b2c934e14971c7432b3eb115c35026

Summary:
5.16.x status wasn't tracked, and also updated for pending 5.17 release.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4471

Differential Revision: D10240925

Pulled By: gfosco

fbshipit-source-id: 95ab368a04a65b201d2518097af69edf2402f544

Summary:
JNI passthrough for utilities/memory/memory_util.cc

sagar0 adamretter
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4446

Differential Revision: D10174578

Pulled By: sagar0

fbshipit-source-id: d1d196d771dff22afb7ef7500f308233675696f8

Summary:
It also renames InstallMemtableFlushResults to MaybeInstallMemtableFlushResults to clarify its contract.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4464

Differential Revision: D10224918

Pulled By: maysamyabandeh

fbshipit-source-id: 04e3f2d8542002cb9f8010cb436f5152751b3cbe

Summary:
The contract of snprintf says that it returns "The number of characters that would have been written if n had been sufficiently large" http://www.cplusplus.com/reference/cstdio/snprintf/
The existing code however was assuming that the return value is the actual number of written bytes and uses that to reposition the starting point on the next call to snprintf. This leads to buffer overflow when the last call to snprintf has filled up the buffer.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4465

Differential Revision: D10224080

Pulled By: maysamyabandeh

fbshipit-source-id: 40f44e122d15b0db439812a0a361167cf012de3e

Summary:
Fix some typos in the comments
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4456

Differential Revision: D10209214

Pulled By: miasantreble

fbshipit-source-id: dff857ba60396bc95126e635db96d7dc8330d2cb

Summary: Work around upstream bug with modules: https://bugs.llvm.org/show_bug.cgi?id=39184.

Reviewed By: yiwu-arbug

Differential Revision: D10209569

fbshipit-source-id: 696853a02a3869e9c33d0e61168ad4b0436fa3c0

Summary:
The old error message was misleading because it led people to believe the truncation operation failed.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4454

Differential Revision: D10203575

Pulled By: riversand963

fbshipit-source-id: c76482a132566635cb55d4c73d45c461f295ec43

Summary:
this should fix currently failing contrun test: rocksdb-contrun-no_compression, rocksdb-contrun-tsan, rocksdb-contrun-tsan_crash
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4453

Differential Revision: D10202626

Pulled By: miasantreble

fbshipit-source-id: 850b07f14f671b5998c22d8239e2a55b2fc1e355

Summary:
This fix is for `level == 0` in `GetOverlappingInputs()`:
- In `GetOverlappingInputs()`, if `level == 0`, it has potential
risk of overflow if `i == 0`.
- Optmize process when `expand = true`, the expected complexity
can be reduced to O(n).
Signed-off-by: NJiYou <jiyou09@gmail.com>
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4385

Differential Revision: D10181001

Pulled By: riversand963

fbshipit-source-id: 46eef8a1d1605c9329c164e6471cd5c5b6de16b5

Summary:
This is a conceptually simple change, but it touches many files to
pass the allocator through function calls.

We introduce CacheAllocator, which can be used by clients to configure
custom allocator for cache blocks. Our motivation is to hook this up
with folly's `JemallocNodumpAllocator`
(https://github.com/facebook/folly/blob/f43ce6d6866b7b994b3019df561109afae050ebc/folly/experimental/JemallocNodumpAllocator.h),
but there are many other possible use cases.

Additionally, this commit cleans up memory allocation in
`util/compression.h`, making sure that all allocations are wrapped in a
unique_ptr as soon as possible.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4437

Differential Revision: D10132814

Pulled By: yiwu-arbug

fbshipit-source-id: be1343a4b69f6048df127939fea9bbc96969f564

Summary:
Before running CompactFilesTest.SentinelCompressionType, we should check
whether zlib and snappy are supported.

CompactFilesTest.SentinelCompressionType is a newly added test. Compilation and
linking with different options, e.g. COMPILE_WITH_TSAN, COMPILE_WITH_ASAN, etc.
lead to generation of different binaries. On the one hand, it's not clear why
zlib or snappy is present under ASAN, but not under TSAN. On the other hand,
changing the compilation flags for TSAN or ASAN seems a bigger change worth much
more attention. To unblock the cont-runs, I suggest that we simply add these
two checks at the beginning of the test, as we did for
GeneralTableTest.ApproximateOffsetOfCompressed in table/table_test.cc.

Future actions include invesigating the absence of zlib and snappy when
compiling with TSAN, i.e. COMPILE_WITH_TSAN=1, if necessary.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4443

Differential Revision: D10140935

Pulled By: riversand963

fbshipit-source-id: 62f96d1e685386accd2ef0b98f6f754d3fd67b3e

Summary:
Adding IOTA Foundation to USERS.MD
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4436

Differential Revision: D10108142

Pulled By: sagar0

fbshipit-source-id: 948dc9f7169cec5c113ae347f1af765a41355aae

Summary:
Add newline for readability
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4434

Differential Revision: D10127684

Pulled By: riversand963

fbshipit-source-id: 39f3ed7eaea655b6ff83474bc9f7616c6ad59107

Summary:
In DBCompactionTestWithParam::ManualLevelCompactionOutputPathId, there is
a race condition between `DBTestBase::GetSstFileCount` and
`DBImpl::PurgeObsoleteFiles`. The following graph explains why.

```
Timeline  db_compact_test_t              bg_flush_t         bg_compact_t
    |  [initiate bg flush and
    |      start waiting]
    |                                     flush
    |                                     DeleteObsoleteFiles
    |  [waken up by bg_flush_t which
    |   signaled in DeleteObsoleteFiles]
    |
    |  [initiate compaction and
    |   start waiting]
    |
    |                                                         [compact,
    |                                                          set manual.done to true]
    |                                   [signal at the end of
    |                                    BackgroundCallFlush]
    |
    |  [waken up by bg_flush_t
    |   which signaled before
    |   returning from
    |   BackgroundCallFlush]
    |
    |  Check manual.done is true
    |
    |  GetSstFileCount    <-- race condition -->           PurgeObsoleteFiles
    V
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4440

Differential Revision: D10122628

Pulled By: riversand963

fbshipit-source-id: 3ede73c39fee6ad804dc6ac1ed84759c7e63977f

Summary:
Previously `CompactFiles` with `CompressionType::kDisableCompressionOption` caused program to crash on assertion failure. This PR fixes the crash by adding support for that setting. Now, that setting will cause RocksDB to choose compression according to the column family's options.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4438

Differential Revision: D10115761

Pulled By: ajkr

fbshipit-source-id: a553c6fa76fa5b6f73b0d165d95640da6f454122

Summary:
Introduce `RepeatableThread` utility to run task periodically in a separate thread. It is basically the same as the the same class in fbcode, and in addition provide a helper method to let tests mock time and trigger execution one at a time.

We can use this class to replace `TimerQueue` in #4382 and `BlobDB`.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4423

Differential Revision: D10020932

Pulled By: yiwu-arbug

fbshipit-source-id: 3616bef108c39a33c92eedb1256de424b7c04087

Summary:
`FindFile()` and  `FindFileInRange()` actually works as the same
of `std::lower_bound()`. Use `std::lower_bound()` to reduce the
repeated code.

- change `FindFile()` and `FindFileInRange()` to use `std::lower_bound()`
Signed-off-by: NJiYou <jiyou09@gmail.com>
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4372

Differential Revision: D9919677

Pulled By: ajkr

fbshipit-source-id: f74aaa30e2f80e410e299c5a5bca4eaf2a7a26de

Summary:
The assert in PosixEnv::FileExists is currently based on the return value of `access` syscall. Instead it should be based on errno.

Initially I wanted to remove this assert as [`access`](https://linux.die.net/man/2/access) can error out in a few other cases (like EROFS). But on thinking more it feels like the assert is doing the right thing ...  its good to crash on EROFS, EFAULT, EINVAL, and other major filesystem related problems so that the user is immediately aware of the problems while testing.
(I think it might be ok to crash on EIO as well, but there might be a specific reason why it was decided not to crash for EIO, and I don't have that context. So letting the letting the assert checks remain as is for now).
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4427

Differential Revision: D10037200

Pulled By: sagar0

fbshipit-source-id: 5cc96116a2e53cef701f444a8b5290576f311e51

Summary:
I guess we didn't update this script when `--allow_concurrent_memtable_write` became true by default.

Fixes #4413.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4428

Differential Revision: D10036452

Pulled By: ajkr

fbshipit-source-id: f464be0642bd096d9040f82cdc3eae614a902183

Summary:
Improve log handling when avoid_flush_during_recovery=true.
1. restore total_log_size_ after recovery, by summing up existing log sizes. Fixes #4253.
2. truncate the last existing log, since this log can contain preallocated space and it will be a waste to keep the space. It avoids a crash loop of user application cause a lot of log with non-trivial size being created and ultimately take up all disk space.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4405

Differential Revision: D9953933

Pulled By: yiwu-arbug

fbshipit-source-id: 967780fee8acec7f358b6eb65190fb4684f82e56

Summary:
The CollapsedRangeDelMap was entirely mishandling tombstones at the same
sequence number when the tombstones did not have identical start and end
keys. Such tombstones are common since 90fc4069, which causes
tombstones to be split during compactions.

For example, if the tombstone [a, c) @ 1 lies across a compaction
boundary at b, it will be split into [a, b) @ 1 and [b, c) @ 1. Without
this patch, the collapsed range deletion map would look like this:

  a -> 1
  b -> 1
  c -> 0

Notice how the b -> 1 entry is redundant. When the tombstones overlap,
the problem is even worse. Consider tombstones [a, c) @ 1 and [b, d) @
1, which produces this map without this patch:

  a -> 1
  b -> 1
  c -> 0
  d -> 0

This map is corrupt, as a map can never contain adjacent sentinel (zero)
entries. When the iterator advances from b to c, it will notice that c
is a sentinel enty and skip to d--but d is also a sentinel entry! Asking
what tombstone this iterator points to will trigger an assertion, as it
is not pointing to a valid tombstone.

/cc ajkr
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4424

Differential Revision: D10039248

Pulled By: abhimadan

fbshipit-source-id: 6d737c1e88d60e80cf27286726627ba44463e7f4

Summary:
Update template of TARGETS file according to recent changes in #4371 , #4363 and https://github.com/facebook/rocksdb/commit/dbf44c314b4adf3276afc1ca797b88944ca3162c.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4426

Differential Revision: D10025053

Pulled By: yiwu-arbug

fbshipit-source-id: e6a0a702bfd401fc1af240ee446f5690f0bcd85d

Summary:
Improve time measurements for AddTombstones to only include the
call and not the VectorIterator setup. Also add a new
add_tombstones_per_run flag to call AddTombstones multiple times per
aggregator, which will help simulate more realistic workloads.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4395

Differential Revision: D9996811

Pulled By: abhimadan

fbshipit-source-id: 5865a95c323fbd9b3606493013664b4890fe5a02

Summary:
Fix IO error on read not being handle and crashing the DB. With the fix we properly return the error.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4410

Differential Revision: D9979246

Pulled By: yiwu-arbug

fbshipit-source-id: 111a85675067a29c03cb60e9a34103f4ff636694

Summary:
Make the CompactOnDeletionCollectorFactory class public, and provide
methods to update the window size and deletion trigger params. These
will take effect on subsequent created SST files.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4403

Differential Revision: D9976857

Pulled By: anand1976

fbshipit-source-id: 31dbf0511c12fa2bb9b2a7ba620079e0ee09cf48

Summary:
Add Java API `getAggregatedLongProperty(final String property)`
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4379

Differential Revision: D9921463

Pulled By: sagar0

fbshipit-source-id: a02512e1b2aff4765a10b77de9a7bf7b1909d954

Summary:
If range tombstones are generated every few writes, the
KeyGenerator's limit is now extended to account for the additional
Next() calls. This is primarily important for `filluniquerandom`
benchmarks that enforce the call limit.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4404

Differential Revision: D9949326

Pulled By: abhimadan

fbshipit-source-id: 0bdfeb2cad2098dc0b8b029236dab5e4bef25e38

Summary:
This will fix the broken asan crash test:
> Traceback (most recent call last):
  File "tools/db_crashtest.py", line 384, in <module>
    main()
  File "tools/db_crashtest.py", line 368, in main
    parser.add_argument("--" + k, type=type(v() if callable(v) else v))
  File "tools/db_crashtest.py", line 59, in <lambda>
    "index_block_restart_interval": lambda: random.choice(1, 16),
TypeError: choice() takes exactly 2 arguments (3 given)
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4397

Differential Revision: D9933041

Pulled By: miasantreble

fbshipit-source-id: 10998e5bc6b6a5cea3e4088b18465affc246e639

Summary:
The default for index_block_restart_interval is 1 but some use 16 in production. The patch extends crash test to test both values.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4383

Differential Revision: D9887304

Pulled By: maysamyabandeh

fbshipit-source-id: a8d00fea974a79ad563f9f4d9d7b069e9f746a8f

Summary:
Per #4387 this should address the validation error with the link tag.  This is a quick fix, a future iteration could significantly upgrade the jekyll integration.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4392

Differential Revision: D9923643

Pulled By: gfosco

fbshipit-source-id: e7ed478e55c907add8319290326540e6e44fc0d6

Summary:
Add a unit test for range collapsing when non-default comparator is used. This exposes the bug fixed in #4386.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4388

Differential Revision: D9918252

Pulled By: ajkr

fbshipit-source-id: 99501b96b251eab41791a7e33b27055ee36c5c39

Summary:
The Comparator passed to CollapsedRangeDelMap was not used for
operator less of the std::map `rep_` object contained in
CollapsedRangeDelMap. So the map was always sorted using the
default ByteWiseComparator, which seems wrong.

Passing the specified Comparator through for usage in that map
object fixes actual problems we were seeing with RangeDelete operations
that do not delete keys as expected when using a custom Comparator.

I found that the tests in current master crash when I run them locally,
both with and without my patch, at the very same location. I therefore
don't know if the patch breaks something else, but it seems to fix
RangeDeletion issues in our product that uses RocksDB.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4386

Differential Revision: D9916506

Pulled By: ajkr

fbshipit-source-id: 27bff8c775831f089dde8c5289df7343d88b2d66

Summary:
Value delta encoding in format_version 4 requires the differences between the size of two consecutive handles to be sent to BlockBuilder::Add. This applies not only to indexes on blocks but also the indexes on indexes and filters in partitioned indexes and filters respectively. The patch fixes a bug where the partitioned filters would encode the entire size of the handle rather than the difference of the size with the last size.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4381

Differential Revision: D9879505

Pulled By: maysamyabandeh

fbshipit-source-id: 27a22e49b482b927fbd5629dc310c46d63d4b6d1

Summary:
To measure the results of upcoming DeleteRange v2 work, this commit adds
simple benchmarks for RangeDelAggregator. It measures the average time
for AddTombstones and ShouldDelete calls.

Using this to compare the results before #4014 and on the latest master (using the default arguments) produces the following results:

Before #4014:
```
=======================
Results:
=======================
AddTombstones:          1356.28 us
ShouldDelete:           0.401732 us
```

Latest master:
```
=======================
Results:
=======================
AddTombstones:          740.82 us
ShouldDelete:           0.383271 us
```
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4363

Differential Revision: D9881676

Pulled By: abhimadan

fbshipit-source-id: 793e7d61aa4b9d47eb917bbcc03f08695b5e5442