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Pytorch Widedeep

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提交 c973856d 编写于 作者: P Pavol Mulinka
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working_example

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Showing with 886 addition and 3 deletion
examples/15_AUC_multiclass.ipynb 0 → 100644
浏览文件 @ c973856d
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pytorch_widedeep/datasets/__init__.py
浏览文件 @ c973856d
from ._base import load_adult, load_bio_kdd04
from ._base import load_adult, load_bio_kdd04, load_ecoli
__all__ = ["load_bio_kdd04", "load_adult"]
__all__ = ["load_bio_kdd04", "load_adult", "load_ecoli"]
pytorch_widedeep/datasets/_base.py
浏览文件 @ c973856d
......@@ -5,7 +5,7 @@ import pandas as pd
def load_bio_kdd04(as_frame: bool = False):
"""Load and return the higly imbalanced Protein Homology
Dataset from [KDD cup 2004](https://www.kdd.org/kdd-cup/view/kdd-cup-2004/Data.
Dataset from [KDD cup 2004](https://www.kdd.org/kdd-cup/view/kdd-cup-2004/Data).
This datasets include only bio_train.dat part of the dataset
......@@ -46,3 +46,88 @@ def load_adult(as_frame: bool = False):
return df
else:
return df.to_numpy()
def load_ecoli(as_frame: bool = False):
"""Load and return the higly imbalanced multiclass classification e.coli dataset
Dataset from [UCI Machine learning Repository](https://archive.ics.uci.edu/ml/datasets/ecoli).
1. Title: Protein Localization Sites
2. Creator and Maintainer:
Kenta Nakai
Institue of Molecular and Cellular Biology
Osaka, University
1-3 Yamada-oka, Suita 565 Japan
nakai@imcb.osaka-u.ac.jp
http://www.imcb.osaka-u.ac.jp/nakai/psort.html
Donor: Paul Horton (paulh@cs.berkeley.edu)
Date: September, 1996
See also: yeast database
3. Past Usage.
Reference: "A Probablistic Classification System for Predicting the Cellular
Localization Sites of Proteins", Paul Horton & Kenta Nakai,
Intelligent Systems in Molecular Biology, 109-115.
St. Louis, USA 1996.
Results: 81% for E.coli with an ad hoc structured
probability model. Also similar accuracy for Binary Decision Tree and
Bayesian Classifier methods applied by the same authors in
unpublished results.
Predicted Attribute: Localization site of protein. ( non-numeric ).
4. The references below describe a predecessor to this dataset and its
development. They also give results (not cross-validated) for classification
by a rule-based expert system with that version of the dataset.
Reference: "Expert Sytem for Predicting Protein Localization Sites in
Gram-Negative Bacteria", Kenta Nakai & Minoru Kanehisa,
PROTEINS: Structure, Function, and Genetics 11:95-110, 1991.
Reference: "A Knowledge Base for Predicting Protein Localization Sites in
Eukaryotic Cells", Kenta Nakai & Minoru Kanehisa,
Genomics 14:897-911, 1992.
5. Number of Instances: 336 for the E.coli dataset and
6. Number of Attributes.
for E.coli dataset: 8 ( 7 predictive, 1 name )
7. Attribute Information.
1. Sequence Name: Accession number for the SWISS-PROT database
2. mcg: McGeoch's method for signal sequence recognition.
3. gvh: von Heijne's method for signal sequence recognition.
4. lip: von Heijne's Signal Peptidase II consensus sequence score.
Binary attribute.
5. chg: Presence of charge on N-terminus of predicted lipoproteins.
Binary attribute.
6. aac: score of discriminant analysis of the amino acid content of
outer membrane and periplasmic proteins.
7. alm1: score of the ALOM membrane spanning region prediction program.
8. alm2: score of ALOM program after excluding putative cleavable signal
regions from the sequence.
8. Missing Attribute Values: None.
9. Class Distribution. The class is the localization site. Please see Nakai & Kanehisa referenced above for more details.
cp (cytoplasm) 143
im (inner membrane without signal sequence) 77
pp (perisplasm) 52
imU (inner membrane, uncleavable signal sequence) 35
om (outer membrane) 20
omL (outer membrane lipoprotein) 5
imL (inner membrane lipoprotein) 2
imS (inner membrane, cleavable signal sequence) 2
"""
with resources.path("pytorch_widedeep.datasets.data", "ecoli.csv") as fpath:
df = pd.read_csv(fpath, sep=",")
if as_frame:
return df
else:
return df.to_numpy()
\ No newline at end of file
pytorch_widedeep/datasets/data/ecoli.csv 0 → 100644
浏览文件 @ c973856d
SequenceName,mcg,gvh,lip,chg,aac,alm1,alm2,class
AAT_ECOLI,0.49,0.29,0.48,0.50,0.56,0.24,0.35,cp
ACEA_ECOLI,0.07,0.40,0.48,0.50,0.54,0.35,0.44,cp
ACEK_ECOLI,0.56,0.40,0.48,0.50,0.49,0.37,0.46,cp
ACKA_ECOLI,0.59,0.49,0.48,0.50,0.52,0.45,0.36,cp
ADI_ECOLI,0.23,0.32,0.48,0.50,0.55,0.25,0.35,cp
ALKH_ECOLI,0.67,0.39,0.48,0.50,0.36,0.38,0.46,cp
AMPD_ECOLI,0.29,0.28,0.48,0.50,0.44,0.23,0.34,cp
AMY2_ECOLI,0.21,0.34,0.48,0.50,0.51,0.28,0.39,cp
APT_ECOLI,0.20,0.44,0.48,0.50,0.46,0.51,0.57,cp
ARAC_ECOLI,0.42,0.40,0.48,0.50,0.56,0.18,0.30,cp
ASG1_ECOLI,0.42,0.24,0.48,0.50,0.57,0.27,0.37,cp
BTUR_ECOLI,0.25,0.48,0.48,0.50,0.44,0.17,0.29,cp
CAFA_ECOLI,0.39,0.32,0.48,0.50,0.46,0.24,0.35,cp
CAIB_ECOLI,0.51,0.50,0.48,0.50,0.46,0.32,0.35,cp
CFA_ECOLI,0.22,0.43,0.48,0.50,0.48,0.16,0.28,cp
CHEA_ECOLI,0.25,0.40,0.48,0.50,0.46,0.44,0.52,cp
CHEB_ECOLI,0.34,0.45,0.48,0.50,0.38,0.24,0.35,cp
CHEW_ECOLI,0.44,0.27,0.48,0.50,0.55,0.52,0.58,cp
CHEY_ECOLI,0.23,0.40,0.48,0.50,0.39,0.28,0.38,cp
CHEZ_ECOLI,0.41,0.57,0.48,0.50,0.39,0.21,0.32,cp
CRL_ECOLI,0.40,0.45,0.48,0.50,0.38,0.22,0.00,cp
CSPA_ECOLI,0.31,0.23,0.48,0.50,0.73,0.05,0.14,cp
CYNR_ECOLI,0.51,0.54,0.48,0.50,0.41,0.34,0.43,cp
CYPB_ECOLI,0.30,0.16,0.48,0.50,0.56,0.11,0.23,cp
CYPC_ECOLI,0.36,0.39,0.48,0.50,0.48,0.22,0.23,cp
CYSB_ECOLI,0.29,0.37,0.48,0.50,0.48,0.44,0.52,cp
CYSE_ECOLI,0.25,0.40,0.48,0.50,0.47,0.33,0.42,cp
DAPD_ECOLI,0.21,0.51,0.48,0.50,0.50,0.32,0.41,cp
DCP_ECOLI,0.43,0.37,0.48,0.50,0.53,0.35,0.44,cp
DDLA_ECOLI,0.43,0.39,0.48,0.50,0.47,0.31,0.41,cp
DDLB_ECOLI,0.53,0.38,0.48,0.50,0.44,0.26,0.36,cp
DEOC_ECOLI,0.34,0.33,0.48,0.50,0.38,0.35,0.44,cp
DLDH_ECOLI,0.56,0.51,0.48,0.50,0.34,0.37,0.46,cp
EFG_ECOLI,0.40,0.29,0.48,0.50,0.42,0.35,0.44,cp
EFTS_ECOLI,0.24,0.35,0.48,0.50,0.31,0.19,0.31,cp
EFTU_ECOLI,0.36,0.54,0.48,0.50,0.41,0.38,0.46,cp
ENO_ECOLI,0.29,0.52,0.48,0.50,0.42,0.29,0.39,cp
FABB_ECOLI,0.65,0.47,0.48,0.50,0.59,0.30,0.40,cp
FES_ECOLI,0.32,0.42,0.48,0.50,0.35,0.28,0.38,cp
G3P1_ECOLI,0.38,0.46,0.48,0.50,0.48,0.22,0.29,cp
G3P2_ECOLI,0.33,0.45,0.48,0.50,0.52,0.32,0.41,cp
G6PI_ECOLI,0.30,0.37,0.48,0.50,0.59,0.41,0.49,cp
GCVA_ECOLI,0.40,0.50,0.48,0.50,0.45,0.39,0.47,cp
GLNA_ECOLI,0.28,0.38,0.48,0.50,0.50,0.33,0.42,cp
GLPD_ECOLI,0.61,0.45,0.48,0.50,0.48,0.35,0.41,cp
GLYA_ECOLI,0.17,0.38,0.48,0.50,0.45,0.42,0.50,cp
GSHR_ECOLI,0.44,0.35,0.48,0.50,0.55,0.55,0.61,cp
GT_ECOLI,0.43,0.40,0.48,0.50,0.39,0.28,0.39,cp
HEM6_ECOLI,0.42,0.35,0.48,0.50,0.58,0.15,0.27,cp
HEMN_ECOLI,0.23,0.33,0.48,0.50,0.43,0.33,0.43,cp
HPRT_ECOLI,0.37,0.52,0.48,0.50,0.42,0.42,0.36,cp
IF1_ECOLI,0.29,0.30,0.48,0.50,0.45,0.03,0.17,cp
IF2_ECOLI,0.22,0.36,0.48,0.50,0.35,0.39,0.47,cp
ILVY_ECOLI,0.23,0.58,0.48,0.50,0.37,0.53,0.59,cp
IPYR_ECOLI,0.47,0.47,0.48,0.50,0.22,0.16,0.26,cp
KAD_ECOLI,0.54,0.47,0.48,0.50,0.28,0.33,0.42,cp
KDSA_ECOLI,0.51,0.37,0.48,0.50,0.35,0.36,0.45,cp
LEU3_ECOLI,0.40,0.35,0.48,0.50,0.45,0.33,0.42,cp
LON_ECOLI,0.44,0.34,0.48,0.50,0.30,0.33,0.43,cp
LPLA_ECOLI,0.42,0.38,0.48,0.50,0.54,0.34,0.43,cp
LYSR_ECOLI,0.44,0.56,0.48,0.50,0.50,0.46,0.54,cp
MALQ_ECOLI,0.52,0.36,0.48,0.50,0.41,0.28,0.38,cp
MALZ_ECOLI,0.36,0.41,0.48,0.50,0.48,0.47,0.54,cp
MASY_ECOLI,0.18,0.30,0.48,0.50,0.46,0.24,0.35,cp
METB_ECOLI,0.47,0.29,0.48,0.50,0.51,0.33,0.43,cp
METC_ECOLI,0.24,0.43,0.48,0.50,0.54,0.52,0.59,cp
METK_ECOLI,0.25,0.37,0.48,0.50,0.41,0.33,0.42,cp
METR_ECOLI,0.52,0.57,0.48,0.50,0.42,0.47,0.54,cp
METX_ECOLI,0.25,0.37,0.48,0.50,0.43,0.26,0.36,cp
MURF_ECOLI,0.35,0.48,0.48,0.50,0.56,0.40,0.48,cp
NADA_ECOLI,0.26,0.26,0.48,0.50,0.34,0.25,0.35,cp
NFRC_ECOLI,0.44,0.51,0.48,0.50,0.47,0.26,0.36,cp
NHAR_ECOLI,0.37,0.50,0.48,0.50,0.42,0.36,0.45,cp
NIRD_ECOLI,0.44,0.42,0.48,0.50,0.42,0.25,0.20,cp
OMPR_ECOLI,0.24,0.43,0.48,0.50,0.37,0.28,0.38,cp
OTC1_ECOLI,0.42,0.30,0.48,0.50,0.48,0.26,0.36,cp
OTC2_ECOLI,0.48,0.42,0.48,0.50,0.45,0.25,0.35,cp
PEPE_ECOLI,0.41,0.48,0.48,0.50,0.51,0.44,0.51,cp
PFLA_ECOLI,0.44,0.28,0.48,0.50,0.43,0.27,0.37,cp
PFLB_ECOLI,0.29,0.41,0.48,0.50,0.48,0.38,0.46,cp
PGK_ECOLI,0.34,0.28,0.48,0.50,0.41,0.35,0.44,cp
PHOB_ECOLI,0.41,0.43,0.48,0.50,0.45,0.31,0.41,cp
PHOH_ECOLI,0.29,0.47,0.48,0.50,0.41,0.23,0.34,cp
PMBA_ECOLI,0.34,0.55,0.48,0.50,0.58,0.31,0.41,cp
PNP_ECOLI,0.36,0.56,0.48,0.50,0.43,0.45,0.53,cp
PROB_ECOLI,0.40,0.46,0.48,0.50,0.52,0.49,0.56,cp
PT1A_ECOLI,0.50,0.49,0.48,0.50,0.49,0.46,0.53,cp
PT1_ECOLI,0.52,0.44,0.48,0.50,0.37,0.36,0.42,cp
PTCA_ECOLI,0.50,0.51,0.48,0.50,0.27,0.23,0.34,cp
PTCB_ECOLI,0.53,0.42,0.48,0.50,0.16,0.29,0.39,cp
PTFA_ECOLI,0.34,0.46,0.48,0.50,0.52,0.35,0.44,cp
PTGA_ECOLI,0.40,0.42,0.48,0.50,0.37,0.27,0.27,cp
PTHA_ECOLI,0.41,0.43,0.48,0.50,0.50,0.24,0.25,cp
PTHP_ECOLI,0.30,0.45,0.48,0.50,0.36,0.21,0.32,cp
PTKA_ECOLI,0.31,0.47,0.48,0.50,0.29,0.28,0.39,cp
PTKB_ECOLI,0.64,0.76,0.48,0.50,0.45,0.35,0.38,cp
PTNA_ECOLI,0.35,0.37,0.48,0.50,0.30,0.34,0.43,cp
PTWB_ECOLI,0.57,0.54,0.48,0.50,0.37,0.28,0.33,cp
PTWX_ECOLI,0.65,0.55,0.48,0.50,0.34,0.37,0.28,cp
RHAR_ECOLI,0.51,0.46,0.48,0.50,0.58,0.31,0.41,cp
RHAS_ECOLI,0.38,0.40,0.48,0.50,0.63,0.25,0.35,cp
RIMI_ECOLI,0.24,0.57,0.48,0.50,0.63,0.34,0.43,cp
RIMJ_ECOLI,0.38,0.26,0.48,0.50,0.54,0.16,0.28,cp
RIML_ECOLI,0.33,0.47,0.48,0.50,0.53,0.18,0.29,cp
RNB_ECOLI,0.24,0.34,0.48,0.50,0.38,0.30,0.40,cp
RNC_ECOLI,0.26,0.50,0.48,0.50,0.44,0.32,0.41,cp
RND_ECOLI,0.44,0.49,0.48,0.50,0.39,0.38,0.40,cp
RNE_ECOLI,0.43,0.32,0.48,0.50,0.33,0.45,0.52,cp
SERC_ECOLI,0.49,0.43,0.48,0.50,0.49,0.30,0.40,cp
SLYD_ECOLI,0.47,0.28,0.48,0.50,0.56,0.20,0.25,cp
SOXS_ECOLI,0.32,0.33,0.48,0.50,0.60,0.06,0.20,cp
SYA_ECOLI,0.34,0.35,0.48,0.50,0.51,0.49,0.56,cp
SYC_ECOLI,0.35,0.34,0.48,0.50,0.46,0.30,0.27,cp
SYD_ECOLI,0.38,0.30,0.48,0.50,0.43,0.29,0.39,cp
SYE_ECOLI,0.38,0.44,0.48,0.50,0.43,0.20,0.31,cp
SYFA_ECOLI,0.41,0.51,0.48,0.50,0.58,0.20,0.31,cp
SYFB_ECOLI,0.34,0.42,0.48,0.50,0.41,0.34,0.43,cp
SYGA_ECOLI,0.51,0.49,0.48,0.50,0.53,0.14,0.26,cp
SYGB_ECOLI,0.25,0.51,0.48,0.50,0.37,0.42,0.50,cp
SYH_ECOLI,0.29,0.28,0.48,0.50,0.50,0.42,0.50,cp
SYI_ECOLI,0.25,0.26,0.48,0.50,0.39,0.32,0.42,cp
SYK1_ECOLI,0.24,0.41,0.48,0.50,0.49,0.23,0.34,cp
SYK2_ECOLI,0.17,0.39,0.48,0.50,0.53,0.30,0.39,cp
SYL_ECOLI,0.04,0.31,0.48,0.50,0.41,0.29,0.39,cp
SYM_ECOLI,0.61,0.36,0.48,0.50,0.49,0.35,0.44,cp
SYP_ECOLI,0.34,0.51,0.48,0.50,0.44,0.37,0.46,cp
SYQ_ECOLI,0.28,0.33,0.48,0.50,0.45,0.22,0.33,cp
SYR_ECOLI,0.40,0.46,0.48,0.50,0.42,0.35,0.44,cp
SYS_ECOLI,0.23,0.34,0.48,0.50,0.43,0.26,0.37,cp
SYT_ECOLI,0.37,0.44,0.48,0.50,0.42,0.39,0.47,cp
SYV_ECOLI,0.00,0.38,0.48,0.50,0.42,0.48,0.55,cp
SYW_ECOLI,0.39,0.31,0.48,0.50,0.38,0.34,0.43,cp
SYY_ECOLI,0.30,0.44,0.48,0.50,0.49,0.22,0.33,cp
THGA_ECOLI,0.27,0.30,0.48,0.50,0.71,0.28,0.39,cp
THIK_ECOLI,0.17,0.52,0.48,0.50,0.49,0.37,0.46,cp
TYRB_ECOLI,0.36,0.42,0.48,0.50,0.53,0.32,0.41,cp
UBIC_ECOLI,0.30,0.37,0.48,0.50,0.43,0.18,0.30,cp
UGPQ_ECOLI,0.26,0.40,0.48,0.50,0.36,0.26,0.37,cp
USPA_ECOLI,0.40,0.41,0.48,0.50,0.55,0.22,0.33,cp
UVRB_ECOLI,0.22,0.34,0.48,0.50,0.42,0.29,0.39,cp
UVRC_ECOLI,0.44,0.35,0.48,0.50,0.44,0.52,0.59,cp
XGPT_ECOLI,0.27,0.42,0.48,0.50,0.37,0.38,0.43,cp
XYLA_ECOLI,0.16,0.43,0.48,0.50,0.54,0.27,0.37,cp
EMRA_ECOLI,0.06,0.61,0.48,0.50,0.49,0.92,0.37,im
AAS_ECOLI,0.44,0.52,0.48,0.50,0.43,0.47,0.54,im
AMPE_ECOLI,0.63,0.47,0.48,0.50,0.51,0.82,0.84,im
ARAE_ECOLI,0.23,0.48,0.48,0.50,0.59,0.88,0.89,im
ARAH_ECOLI,0.34,0.49,0.48,0.50,0.58,0.85,0.80,im
AROP_ECOLI,0.43,0.40,0.48,0.50,0.58,0.75,0.78,im
ATKB_ECOLI,0.46,0.61,0.48,0.50,0.48,0.86,0.87,im
ATP6_ECOLI,0.27,0.35,0.48,0.50,0.51,0.77,0.79,im
BETT_ECOLI,0.52,0.39,0.48,0.50,0.65,0.71,0.73,im
CODB_ECOLI,0.29,0.47,0.48,0.50,0.71,0.65,0.69,im
CYDA_ECOLI,0.55,0.47,0.48,0.50,0.57,0.78,0.80,im
CYOC_ECOLI,0.12,0.67,0.48,0.50,0.74,0.58,0.63,im
CYOD_ECOLI,0.40,0.50,0.48,0.50,0.65,0.82,0.84,im
DCTA_ECOLI,0.73,0.36,0.48,0.50,0.53,0.91,0.92,im
DHG_ECOLI,0.84,0.44,0.48,0.50,0.48,0.71,0.74,im
DHSC_ECOLI,0.48,0.45,0.48,0.50,0.60,0.78,0.80,im
DHSD_ECOLI,0.54,0.49,0.48,0.50,0.40,0.87,0.88,im
DPPC_ECOLI,0.48,0.41,0.48,0.50,0.51,0.90,0.88,im
DSBB_ECOLI,0.50,0.66,0.48,0.50,0.31,0.92,0.92,im
ENVZ_ECOLI,0.72,0.46,0.48,0.50,0.51,0.66,0.70,im
EXBB_ECOLI,0.47,0.55,0.48,0.50,0.58,0.71,0.75,im
FRDC_ECOLI,0.33,0.56,0.48,0.50,0.33,0.78,0.80,im
FRDD_ECOLI,0.64,0.58,0.48,0.50,0.48,0.78,0.73,im
FTSW_ECOLI,0.54,0.57,0.48,0.50,0.56,0.81,0.83,im
GABP_ECOLI,0.47,0.59,0.48,0.50,0.52,0.76,0.79,im
GALP_ECOLI,0.63,0.50,0.48,0.50,0.59,0.85,0.86,im
GLNP_ECOLI,0.49,0.42,0.48,0.50,0.53,0.79,0.81,im
GLPT_ECOLI,0.31,0.50,0.48,0.50,0.57,0.84,0.85,im
GLTP_ECOLI,0.74,0.44,0.48,0.50,0.55,0.88,0.89,im
KDGL_ECOLI,0.33,0.45,0.48,0.50,0.45,0.88,0.89,im
KGTP_ECOLI,0.45,0.40,0.48,0.50,0.61,0.74,0.77,im
LACY_ECOLI,0.71,0.40,0.48,0.50,0.71,0.70,0.74,im
LGT_ECOLI,0.50,0.37,0.48,0.50,0.66,0.64,0.69,im
LLDP_ECOLI,0.66,0.53,0.48,0.50,0.59,0.66,0.66,im
LNT_ECOLI,0.60,0.61,0.48,0.50,0.54,0.67,0.71,im
LSPA_ECOLI,0.83,0.37,0.48,0.50,0.61,0.71,0.74,im
LYSP_ECOLI,0.34,0.51,0.48,0.50,0.67,0.90,0.90,im
MALF_ECOLI,0.63,0.54,0.48,0.50,0.65,0.79,0.81,im
MALG_ECOLI,0.70,0.40,0.48,0.50,0.56,0.86,0.83,im
MCP3_ECOLI,0.60,0.50,1.00,0.50,0.54,0.77,0.80,im
MSBB_ECOLI,0.16,0.51,0.48,0.50,0.33,0.39,0.48,im
MTR_ECOLI,0.74,0.70,0.48,0.50,0.66,0.65,0.69,im
NANT_ECOLI,0.20,0.46,0.48,0.50,0.57,0.78,0.81,im
NHAA_ECOLI,0.89,0.55,0.48,0.50,0.51,0.72,0.76,im
NHAB_ECOLI,0.70,0.46,0.48,0.50,0.56,0.78,0.73,im
PHEP_ECOLI,0.12,0.43,0.48,0.50,0.63,0.70,0.74,im
PHOR_ECOLI,0.61,0.52,0.48,0.50,0.54,0.67,0.52,im
PNTA_ECOLI,0.33,0.37,0.48,0.50,0.46,0.65,0.69,im
POTE_ECOLI,0.63,0.65,0.48,0.50,0.66,0.67,0.71,im
PROP_ECOLI,0.41,0.51,0.48,0.50,0.53,0.75,0.78,im
PSTA_ECOLI,0.34,0.67,0.48,0.50,0.52,0.76,0.79,im
PSTC_ECOLI,0.58,0.34,0.48,0.50,0.56,0.87,0.81,im
PTAA_ECOLI,0.59,0.56,0.48,0.50,0.55,0.80,0.82,im
PTBA_ECOLI,0.51,0.40,0.48,0.50,0.57,0.62,0.67,im
PTCC_ECOLI,0.50,0.57,0.48,0.50,0.71,0.61,0.66,im
PTDA_ECOLI,0.60,0.46,0.48,0.50,0.45,0.81,0.83,im
PTFB_ECOLI,0.37,0.47,0.48,0.50,0.39,0.76,0.79,im
PTGB_ECOLI,0.58,0.55,0.48,0.50,0.57,0.70,0.74,im
PTHB_ECOLI,0.36,0.47,0.48,0.50,0.51,0.69,0.72,im
PTMA_ECOLI,0.39,0.41,0.48,0.50,0.52,0.72,0.75,im
PTOA_ECOLI,0.35,0.51,0.48,0.50,0.61,0.71,0.74,im
PTTB_ECOLI,0.31,0.44,0.48,0.50,0.50,0.79,0.82,im
RODA_ECOLI,0.61,0.66,0.48,0.50,0.46,0.87,0.88,im
SECE_ECOLI,0.48,0.49,0.48,0.50,0.52,0.77,0.71,im
SECF_ECOLI,0.11,0.50,0.48,0.50,0.58,0.72,0.68,im
SECY_ECOLI,0.31,0.36,0.48,0.50,0.58,0.94,0.94,im
TNAB_ECOLI,0.68,0.51,0.48,0.50,0.71,0.75,0.78,im
XYLE_ECOLI,0.69,0.39,0.48,0.50,0.57,0.76,0.79,im
YCEE_ECOLI,0.52,0.54,0.48,0.50,0.62,0.76,0.79,im
EXBD_ECOLI,0.46,0.59,0.48,0.50,0.36,0.76,0.23,im
FTSL_ECOLI,0.36,0.45,0.48,0.50,0.38,0.79,0.17,im
FTSN_ECOLI,0.00,0.51,0.48,0.50,0.35,0.67,0.44,im
FTSQ_ECOLI,0.10,0.49,0.48,0.50,0.41,0.67,0.21,im
MOTB_ECOLI,0.30,0.51,0.48,0.50,0.42,0.61,0.34,im
TOLA_ECOLI,0.61,0.47,0.48,0.50,0.00,0.80,0.32,im
TOLQ_ECOLI,0.63,0.75,0.48,0.50,0.64,0.73,0.66,im
EMRB_ECOLI,0.71,0.52,0.48,0.50,0.64,1.00,0.99,im
ATKC_ECOLI,0.85,0.53,0.48,0.50,0.53,0.52,0.35,imS
NFRB_ECOLI,0.63,0.49,0.48,0.50,0.54,0.76,0.79,imS
NLPA_ECOLI,0.75,0.55,1.00,1.00,0.40,0.47,0.30,imL
CYOA_ECOLI,0.70,0.39,1.00,0.50,0.51,0.82,0.84,imL
ATKA_ECOLI,0.72,0.42,0.48,0.50,0.65,0.77,0.79,imU
BCR_ECOLI,0.79,0.41,0.48,0.50,0.66,0.81,0.83,imU
CADB_ECOLI,0.83,0.48,0.48,0.50,0.65,0.76,0.79,imU
CAIT_ECOLI,0.69,0.43,0.48,0.50,0.59,0.74,0.77,imU
CPXA_ECOLI,0.79,0.36,0.48,0.50,0.46,0.82,0.70,imU
CRED_ECOLI,0.78,0.33,0.48,0.50,0.57,0.77,0.79,imU
CYDB_ECOLI,0.75,0.37,0.48,0.50,0.64,0.70,0.74,imU
CYOB_ECOLI,0.59,0.29,0.48,0.50,0.64,0.75,0.77,imU
CYOE_ECOLI,0.67,0.37,0.48,0.50,0.54,0.64,0.68,imU
DMSC_ECOLI,0.66,0.48,0.48,0.50,0.54,0.70,0.74,imU
DPPB_ECOLI,0.64,0.46,0.48,0.50,0.48,0.73,0.76,imU
DSBD_ECOLI,0.76,0.71,0.48,0.50,0.50,0.71,0.75,imU
FEPD_ECOLI,0.84,0.49,0.48,0.50,0.55,0.78,0.74,imU
FEPG_ECOLI,0.77,0.55,0.48,0.50,0.51,0.78,0.74,imU
FTSH_ECOLI,0.81,0.44,0.48,0.50,0.42,0.67,0.68,imU
GLTS_ECOLI,0.58,0.60,0.48,0.50,0.59,0.73,0.76,imU
KEFC_ECOLI,0.63,0.42,0.48,0.50,0.48,0.77,0.80,imU
KUP_ECOLI,0.62,0.42,0.48,0.50,0.58,0.79,0.81,imU
MCP1_ECOLI,0.86,0.39,0.48,0.50,0.59,0.89,0.90,imU
MCP2_ECOLI,0.81,0.53,0.48,0.50,0.57,0.87,0.88,imU
MCP4_ECOLI,0.87,0.49,0.48,0.50,0.61,0.76,0.79,imU
MELB_ECOLI,0.47,0.46,0.48,0.50,0.62,0.74,0.77,imU
MOTA_ECOLI,0.76,0.41,0.48,0.50,0.50,0.59,0.62,imU
NUPC_ECOLI,0.70,0.53,0.48,0.50,0.70,0.86,0.87,imU
NUPG_ECOLI,0.64,0.45,0.48,0.50,0.67,0.61,0.66,imU
PNTB_ECOLI,0.81,0.52,0.48,0.50,0.57,0.78,0.80,imU
PTKC_ECOLI,0.73,0.26,0.48,0.50,0.57,0.75,0.78,imU
RHAT_ECOLI,0.49,0.61,1.00,0.50,0.56,0.71,0.74,imU
SECD_ECOLI,0.88,0.42,0.48,0.50,0.52,0.73,0.75,imU
SECG_ECOLI,0.84,0.54,0.48,0.50,0.75,0.92,0.70,imU
TEHA_ECOLI,0.63,0.51,0.48,0.50,0.64,0.72,0.76,imU
TYRP_ECOLI,0.86,0.55,0.48,0.50,0.63,0.81,0.83,imU
UHPB_ECOLI,0.79,0.54,0.48,0.50,0.50,0.66,0.68,imU
TONB_ECOLI,0.57,0.38,0.48,0.50,0.06,0.49,0.33,imU
LEP_ECOLI,0.78,0.44,0.48,0.50,0.45,0.73,0.68,imU
FADL_ECOLI,0.78,0.68,0.48,0.50,0.83,0.40,0.29,om
FHUA_ECOLI,0.63,0.69,0.48,0.50,0.65,0.41,0.28,om
LAMB_ECOLI,0.67,0.88,0.48,0.50,0.73,0.50,0.25,om
NFRA_ECOLI,0.61,0.75,0.48,0.50,0.51,0.33,0.33,om
NMPC_ECOLI,0.67,0.84,0.48,0.50,0.74,0.54,0.37,om
OMPA_ECOLI,0.74,0.90,0.48,0.50,0.57,0.53,0.29,om
OMPC_ECOLI,0.73,0.84,0.48,0.50,0.86,0.58,0.29,om
OMPF_ECOLI,0.75,0.76,0.48,0.50,0.83,0.57,0.30,om
OMPX_ECOLI,0.77,0.57,0.48,0.50,0.88,0.53,0.20,om
PHOE_ECOLI,0.74,0.78,0.48,0.50,0.75,0.54,0.15,om
TSX_ECOLI,0.68,0.76,0.48,0.50,0.84,0.45,0.27,om
BTUB_ECOLI,0.56,0.68,0.48,0.50,0.77,0.36,0.45,om
CIRA_ECOLI,0.65,0.51,0.48,0.50,0.66,0.54,0.33,om
FECA_ECOLI,0.52,0.81,0.48,0.50,0.72,0.38,0.38,om
FEPA_ECOLI,0.64,0.57,0.48,0.50,0.70,0.33,0.26,om
FHUE_ECOLI,0.60,0.76,1.00,0.50,0.77,0.59,0.52,om
OMPP_ECOLI,0.69,0.59,0.48,0.50,0.77,0.39,0.21,om
OMPT_ECOLI,0.63,0.49,0.48,0.50,0.79,0.45,0.28,om
TOLC_ECOLI,0.71,0.71,0.48,0.50,0.68,0.43,0.36,om
PA1_ECOLI,0.68,0.63,0.48,0.50,0.73,0.40,0.30,om
MULI_ECOLI,0.77,0.57,1.00,0.50,0.37,0.54,0.01,omL
NLPB_ECOLI,0.66,0.49,1.00,0.50,0.54,0.56,0.36,omL
NLPE_ECOLI,0.71,0.46,1.00,0.50,0.52,0.59,0.30,omL
PAL_ECOLI,0.67,0.55,1.00,0.50,0.66,0.58,0.16,omL
SLP_ECOLI,0.68,0.49,1.00,0.50,0.62,0.55,0.28,omL
AGP_ECOLI,0.74,0.49,0.48,0.50,0.42,0.54,0.36,pp
AMY1_ECOLI,0.70,0.61,0.48,0.50,0.56,0.52,0.43,pp
ARAF_ECOLI,0.66,0.86,0.48,0.50,0.34,0.41,0.36,pp
ASG2_ECOLI,0.73,0.78,0.48,0.50,0.58,0.51,0.31,pp
BGLX_ECOLI,0.65,0.57,0.48,0.50,0.47,0.47,0.51,pp
C562_ECOLI,0.72,0.86,0.48,0.50,0.17,0.55,0.21,pp
CN16_ECOLI,0.67,0.70,0.48,0.50,0.46,0.45,0.33,pp
CYPH_ECOLI,0.67,0.81,0.48,0.50,0.54,0.49,0.23,pp
CYSP_ECOLI,0.67,0.61,0.48,0.50,0.51,0.37,0.38,pp
DGAL_ECOLI,0.63,1.00,0.48,0.50,0.35,0.51,0.49,pp
DPPA_ECOLI,0.57,0.59,0.48,0.50,0.39,0.47,0.33,pp
DSBA_ECOLI,0.71,0.71,0.48,0.50,0.40,0.54,0.39,pp
DSBC_ECOLI,0.66,0.74,0.48,0.50,0.31,0.38,0.43,pp
ECOT_ECOLI,0.67,0.81,0.48,0.50,0.25,0.42,0.25,pp
ECPD_ECOLI,0.64,0.72,0.48,0.50,0.49,0.42,0.19,pp
FECB_ECOLI,0.68,0.82,0.48,0.50,0.38,0.65,0.56,pp
FECR_ECOLI,0.32,0.39,0.48,0.50,0.53,0.28,0.38,pp
FEPB_ECOLI,0.70,0.64,0.48,0.50,0.47,0.51,0.47,pp
FIMC_ECOLI,0.63,0.57,0.48,0.50,0.49,0.70,0.20,pp
GGT_ECOLI,0.74,0.82,0.48,0.50,0.49,0.49,0.41,pp
GLNH_ECOLI,0.63,0.86,0.48,0.50,0.39,0.47,0.34,pp
GLPQ_ECOLI,0.63,0.83,0.48,0.50,0.40,0.39,0.19,pp
HTRA_ECOLI,0.63,0.71,0.48,0.50,0.60,0.40,0.39,pp
LIVJ_ECOLI,0.71,0.86,0.48,0.50,0.40,0.54,0.32,pp
LIVK_ECOLI,0.68,0.78,0.48,0.50,0.43,0.44,0.42,pp
MALE_ECOLI,0.64,0.84,0.48,0.50,0.37,0.45,0.40,pp
MALM_ECOLI,0.74,0.47,0.48,0.50,0.50,0.57,0.42,pp
MEPA_ECOLI,0.75,0.84,0.48,0.50,0.35,0.52,0.33,pp
MODA_ECOLI,0.63,0.65,0.48,0.50,0.39,0.44,0.35,pp
NRFA_ECOLI,0.69,0.67,0.48,0.50,0.30,0.39,0.24,pp
NRFF_ECOLI,0.70,0.71,0.48,0.50,0.42,0.84,0.85,pp
OPPA_ECOLI,0.69,0.80,0.48,0.50,0.46,0.57,0.26,pp
OSMY_ECOLI,0.64,0.66,0.48,0.50,0.41,0.39,0.20,pp
POTD_ECOLI,0.63,0.80,0.48,0.50,0.46,0.31,0.29,pp
POTF_ECOLI,0.66,0.71,0.48,0.50,0.41,0.50,0.35,pp
PPA_ECOLI,0.69,0.59,0.48,0.50,0.46,0.44,0.52,pp
PPB_ECOLI,0.68,0.67,0.48,0.50,0.49,0.40,0.34,pp
PROX_ECOLI,0.64,0.78,0.48,0.50,0.50,0.36,0.38,pp
PSTS_ECOLI,0.62,0.78,0.48,0.50,0.47,0.49,0.54,pp
PTR_ECOLI,0.76,0.73,0.48,0.50,0.44,0.39,0.39,pp
RBSB_ECOLI,0.64,0.81,0.48,0.50,0.37,0.39,0.44,pp
SPEA_ECOLI,0.29,0.39,0.48,0.50,0.52,0.40,0.48,pp
SUBI_ECOLI,0.62,0.83,0.48,0.50,0.46,0.36,0.40,pp
TBPA_ECOLI,0.56,0.54,0.48,0.50,0.43,0.37,0.30,pp
TESA_ECOLI,0.69,0.66,0.48,0.50,0.41,0.50,0.25,pp
TOLB_ECOLI,0.69,0.65,0.48,0.50,0.63,0.48,0.41,pp
TORA_ECOLI,0.43,0.59,0.48,0.50,0.52,0.49,0.56,pp
TREA_ECOLI,0.74,0.56,0.48,0.50,0.47,0.68,0.30,pp
UGPB_ECOLI,0.71,0.57,0.48,0.50,0.48,0.35,0.32,pp
USHA_ECOLI,0.61,0.60,0.48,0.50,0.44,0.39,0.38,pp
XYLF_ECOLI,0.59,0.61,0.48,0.50,0.42,0.42,0.37,pp
YTFQ_ECOLI,0.74,0.74,0.48,0.50,0.31,0.53,0.52,pp
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