1. 09 3月, 2016 2 次提交
    • S
      [SPARK-13715][MLLIB] Remove last usages of jblas in tests · 54040f8d
      Sean Owen 提交于
      ## What changes were proposed in this pull request?
      
      Remove last usage of jblas, in tests
      
      ## How was this patch tested?
      
      Jenkins tests -- the same ones that are being modified.
      
      Author: Sean Owen <sowen@cloudera.com>
      
      Closes #11560 from srowen/SPARK-13715.
      54040f8d
    • J
      [HOTFIX][YARN] Fix yarn cluster mode fire and forget regression · ca1a7b9d
      jerryshao 提交于
      ## What changes were proposed in this pull request?
      
      Fire and forget is disabled by default, with this patch #10205 it is enabled by default, so this is a regression should be fixed.
      
      ## How was this patch tested?
      
      Manually verified this change.
      
      Author: jerryshao <sshao@hortonworks.com>
      
      Closes #11577 from jerryshao/hot-fix-yarn-cluster.
      ca1a7b9d
  2. 08 3月, 2016 20 次提交
    • W
      [SPARK-13637][SQL] use more information to simplify the code in Expand builder · 7d05d02b
      Wenchen Fan 提交于
      ## What changes were proposed in this pull request?
      
      The code in `Expand.apply` can be simplified by existing information:
      
      * the `groupByExprs` parameter are all `Attribute`s
      * the `child` parameter is a `Project` that append aliased group by expressions to its child's output
      
      ## How was this patch tested?
      
      by existing tests.
      
      Author: Wenchen Fan <wenchen@databricks.com>
      
      Closes #11485 from cloud-fan/expand.
      7d05d02b
    • J
      [SPARK-13675][UI] Fix wrong historyserver url link for application running in yarn cluster mode · 9e86e6ef
      jerryshao 提交于
      ## What changes were proposed in this pull request?
      
      Current URL for each application to access history UI is like:
      http://localhost:18080/history/application_1457058760338_0016/1/jobs/ or http://localhost:18080/history/application_1457058760338_0016/2/jobs/
      
      Here **1** or **2** represents the number of attempts in `historypage.js`, but it will parse to attempt id in `HistoryServer`, while the correct attempt id should be like "appattempt_1457058760338_0016_000002", so it will fail to parse to a correct attempt id in HistoryServer.
      
      This is OK in yarn client mode, since we don't need this attempt id to fetch out the app cache, but it is failed in yarn cluster mode, where attempt id "1" or "2" is actually wrong.
      
      So here we should fix this url to parse the correct application id and attempt id. Also the suffix "jobs/" is not needed.
      
      Here is the screenshot:
      
      ![screen shot 2016-02-29 at 3 57 32 pm](https://cloud.githubusercontent.com/assets/850797/13524377/d4b44348-e235-11e5-8b3e-bc06de306e87.png)
      
      ## How was this patch tested?
      
      This patch is tested manually, with different master and deploy mode.
      
      ![image](https://cloud.githubusercontent.com/assets/850797/13524419/118be5a0-e236-11e5-8022-3ff613ccde46.png)
      
      Author: jerryshao <sshao@hortonworks.com>
      
      Closes #11518 from jerryshao/SPARK-13675.
      9e86e6ef
    • D
      [SPARK-13117][WEB UI] WebUI should use the local ip not 0.0.0.0 · 9bf76ddd
      Devaraj K 提交于
      ## What changes were proposed in this pull request?
      
      In WebUI, now Jetty Server starts with SPARK_LOCAL_IP config value if it
      is configured otherwise it starts with default value as '0.0.0.0'.
      
      It is continuation as per the closed PR https://github.com/apache/spark/pull/11133 for the JIRA SPARK-13117 and discussion in SPARK-13117.
      
      ## How was this patch tested?
      
      This has been verified using the command 'netstat -tnlp | grep <PID>' to check on which IP/hostname is binding with the below steps.
      
      In the below results, mentioned PID in the command is the corresponding process id.
      
      #### Without the patch changes,
      Web UI(Jetty Server) is not taking the value configured for SPARK_LOCAL_IP and it is listening to all the interfaces.
      ###### Master
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 3930
      tcp6       0      0 :::8080                 :::*                    LISTEN      3930/java
      ```
      
      ###### Worker
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 4090
      tcp6       0      0 :::8081                 :::*                    LISTEN      4090/java
      ```
      
      ###### History Server Process,
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 2471
      tcp6       0      0 :::18080                :::*                    LISTEN      2471/java
      ```
      ###### Driver
      ```
      [devarajstobdtserver2 spark-master]$ netstat -tnlp | grep 6556
      tcp6       0      0 :::4040                 :::*                    LISTEN      6556/java
      ```
      
      #### With the patch changes
      
      ##### i. With SPARK_LOCAL_IP configured
      If the SPARK_LOCAL_IP is configured then all the processes Web UI(Jetty Server) is getting bind to the configured value.
      ###### Master
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 1561
      tcp6       0      0 x.x.x.x:8080       :::*                    LISTEN      1561/java
      ```
      ###### Worker
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 2229
      tcp6       0      0 x.x.x.x:8081       :::*                    LISTEN      2229/java
      ```
      ###### History Server
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 3747
      tcp6       0      0 x.x.x.x:18080      :::*                    LISTEN      3747/java
      ```
      ###### Driver
      ```
      [devarajstobdtserver2 spark-master]$ netstat -tnlp | grep 6013
      tcp6       0      0 x.x.x.x:4040       :::*                    LISTEN      6013/java
      ```
      
      ##### ii. Without SPARK_LOCAL_IP configured
      If the SPARK_LOCAL_IP is not configured then all the processes Web UI(Jetty Server) will start with the '0.0.0.0' as default value.
      ###### Master
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 4573
      tcp6       0      0 :::8080                 :::*                    LISTEN      4573/java
      ```
      
      ###### Worker
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 4703
      tcp6       0      0 :::8081                 :::*                    LISTEN      4703/java
      ```
      
      ###### History Server
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 4846
      tcp6       0      0 :::18080                :::*                    LISTEN      4846/java
      ```
      
      ###### Driver
      ```
      [devarajstobdtserver2 sbin]$ netstat -tnlp | grep 5437
      tcp6       0      0 :::4040                 :::*                    LISTEN      5437/java
      ```
      
      Author: Devaraj K <devaraj@apache.org>
      
      Closes #11490 from devaraj-kavali/SPARK-13117-v1.
      9bf76ddd
    • D
      [HOT-FIX][BUILD] Use the new location of `checkstyle-suppressions.xml` · 7771c731
      Dongjoon Hyun 提交于
      ## What changes were proposed in this pull request?
      
      This PR fixes `dev/lint-java` and `mvn checkstyle:check` failures due the recent file location change.
      The following is the error message of current master.
      ```
      Checkstyle checks failed at following occurrences:
      [ERROR] Failed to execute goal org.apache.maven.plugins:maven-checkstyle-plugin:2.17:check (default-cli) on project spark-parent_2.11: Failed during checkstyle configuration: cannot initialize module SuppressionFilter - Cannot set property 'file' to 'checkstyle-suppressions.xml' in module SuppressionFilter: InvocationTargetException: Unable to find: checkstyle-suppressions.xml -> [Help 1]
      ```
      
      ## How was this patch tested?
      
      Manual. The following command should run correctly.
      ```
      ./dev/lint-java
      mvn checkstyle:check
      ```
      
      Author: Dongjoon Hyun <dongjoon@apache.org>
      
      Closes #11567 from dongjoon-hyun/hotfix_checkstyle_suppression.
      7771c731
    • J
      [SPARK-13659] Refactor BlockStore put*() APIs to remove returnValues · e52e597d
      Josh Rosen 提交于
      In preparation for larger refactoring, this patch removes the confusing `returnValues` option from the BlockStore put() APIs: returning the value is only useful in one place (caching) and in other situations, such as block replication, it's simpler to put() and then get().
      
      As part of this change, I needed to refactor `BlockManager.doPut()`'s block replication code. I also changed `doPut()` to access the memory and disk stores directly rather than calling them through the BlockStore interface; this is in anticipation of a followup patch to remove the BlockStore interface so that the disk store can expose a binary-data-oriented API which is not concerned with Java objects or serialization.
      
      These changes should be covered by the existing storage unit tests. The best way to review this patch is probably to look at the individual commits, all of which are small and have useful descriptions to guide the review.
      
      /cc davies for review.
      
      Author: Josh Rosen <joshrosen@databricks.com>
      
      Closes #11502 from JoshRosen/remove-returnvalues.
      e52e597d
    • S
      [SPARK-13711][CORE] Don't call SparkUncaughtExceptionHandler in AppClient as it's in driver · 017cdf2b
      Shixiong Zhu 提交于
      ## What changes were proposed in this pull request?
      
      AppClient runs in the driver side. It should not call `Utils.tryOrExit` as it will send exception to SparkUncaughtExceptionHandler and call `System.exit`. This PR just removed `Utils.tryOrExit`.
      
      ## How was this patch tested?
      
      manual tests.
      
      Author: Shixiong Zhu <shixiong@databricks.com>
      
      Closes #11566 from zsxwing/SPARK-13711.
      017cdf2b
    • D
      [SPARK-13404] [SQL] Create variables for input row when it's actually used · 25bba58d
      Davies Liu 提交于
      ## What changes were proposed in this pull request?
      
      This PR change the way how we generate the code for the output variables passing from a plan to it's parent.
      
      Right now, they are generated before call consume() of it's parent. It's not efficient, if the parent is a Filter or Join, which could filter out most the rows, the time to access some of the columns that are not used by the Filter or Join are wasted.
      
      This PR try to improve this by defering the access of columns until they are actually used by a plan. After this PR, a plan does not need to generate code to evaluate the variables for output, just passing the ExprCode to its parent by `consume()`. In `parent.consumeChild()`, it will check the output from child and `usedInputs`, generate the code for those columns that is part of `usedInputs` before calling `doConsume()`.
      
      This PR also change the `if` from
      ```
      if (cond) {
        xxx
      }
      ```
      to
      ```
      if (!cond) continue;
      xxx
      ```
      The new one could help to reduce the nested indents for multiple levels of Filter and BroadcastHashJoin.
      
      It also added some comments for operators.
      
      ## How was the this patch tested?
      
      Unit tests. Manually ran TPCDS Q55, this PR improve the performance about 30% (scale=10, from 2.56s to 1.96s)
      
      Author: Davies Liu <davies@databricks.com>
      
      Closes #11274 from davies/gen_defer.
      25bba58d
    • A
      [SPARK-13689][SQL] Move helper things in CatalystQl to new utils object · da7bfac4
      Andrew Or 提交于
      ## What changes were proposed in this pull request?
      
      When we add more DDL parsing logic in the future, SparkQl will become very big. To keep it smaller, we'll introduce helper "parser objects", e.g. one to parse alter table commands. However, these parser objects will need to access some helper methods that exist in CatalystQl. The proposal is to move those methods to an isolated ParserUtils object.
      
      This is based on viirya's changes in #11048. It prefaces the bigger fix for SPARK-13139 to make the diff of that patch smaller.
      
      ## How was this patch tested?
      
      No change in functionality, so just Jenkins.
      
      Author: Andrew Or <andrew@databricks.com>
      
      Closes #11529 from andrewor14/parser-utils.
      da7bfac4
    • T
      [SPARK-13648] Add Hive Cli to classes for isolated classloader · 46f25c24
      Tim Preece 提交于
      ## What changes were proposed in this pull request?
      
      Adding the hive-cli classes to the classloader
      
      ## How was this patch tested?
      
      The hive Versionssuite tests were run
      
      This is my original work and I license the work to the project under the project's open source license.
      
      Author: Tim Preece <tim.preece.in.oz@gmail.com>
      
      Closes #11495 from preecet/master.
      46f25c24
    • M
      [SPARK-13665][SQL] Separate the concerns of HadoopFsRelation · e720dda4
      Michael Armbrust 提交于
      `HadoopFsRelation` is used for reading most files into Spark SQL.  However today this class mixes the concerns of file management, schema reconciliation, scan building, bucketing, partitioning, and writing data.  As a result, many data sources are forced to reimplement the same functionality and the various layers have accumulated a fair bit of inefficiency.  This PR is a first cut at separating this into several components / interfaces that are each described below.  Additionally, all implementations inside of Spark (parquet, csv, json, text, orc, svmlib) have been ported to the new API `FileFormat`.  External libraries, such as spark-avro will also need to be ported to work with Spark 2.0.
      
      ### HadoopFsRelation
      A simple `case class` that acts as a container for all of the metadata required to read from a datasource.  All discovery, resolution and merging logic for schemas and partitions has been removed.  This an internal representation that no longer needs to be exposed to developers.
      
      ```scala
      case class HadoopFsRelation(
          sqlContext: SQLContext,
          location: FileCatalog,
          partitionSchema: StructType,
          dataSchema: StructType,
          bucketSpec: Option[BucketSpec],
          fileFormat: FileFormat,
          options: Map[String, String]) extends BaseRelation
      ```
      
      ### FileFormat
      The primary interface that will be implemented by each different format including external libraries.  Implementors are responsible for reading a given format and converting it into `InternalRow` as well as writing out an `InternalRow`.  A format can optionally return a schema that is inferred from a set of files.
      
      ```scala
      trait FileFormat {
        def inferSchema(
            sqlContext: SQLContext,
            options: Map[String, String],
            files: Seq[FileStatus]): Option[StructType]
      
        def prepareWrite(
            sqlContext: SQLContext,
            job: Job,
            options: Map[String, String],
            dataSchema: StructType): OutputWriterFactory
      
        def buildInternalScan(
            sqlContext: SQLContext,
            dataSchema: StructType,
            requiredColumns: Array[String],
            filters: Array[Filter],
            bucketSet: Option[BitSet],
            inputFiles: Array[FileStatus],
            broadcastedConf: Broadcast[SerializableConfiguration],
            options: Map[String, String]): RDD[InternalRow]
      }
      ```
      
      The current interface is based on what was required to get all the tests passing again, but still mixes a couple of concerns (i.e. `bucketSet` is passed down to the scan instead of being resolved by the planner).  Additionally, scans are still returning `RDD`s instead of iterators for single files.  In a future PR, bucketing should be removed from this interface and the scan should be isolated to a single file.
      
      ### FileCatalog
      This interface is used to list the files that make up a given relation, as well as handle directory based partitioning.
      
      ```scala
      trait FileCatalog {
        def paths: Seq[Path]
        def partitionSpec(schema: Option[StructType]): PartitionSpec
        def allFiles(): Seq[FileStatus]
        def getStatus(path: Path): Array[FileStatus]
        def refresh(): Unit
      }
      ```
      
      Currently there are two implementations:
       - `HDFSFileCatalog` - based on code from the old `HadoopFsRelation`.  Infers partitioning by recursive listing and caches this data for performance
       - `HiveFileCatalog` - based on the above, but it uses the partition spec from the Hive Metastore.
      
      ### ResolvedDataSource
      Produces a logical plan given the following description of a Data Source (which can come from DataFrameReader or a metastore):
       - `paths: Seq[String] = Nil`
       - `userSpecifiedSchema: Option[StructType] = None`
       - `partitionColumns: Array[String] = Array.empty`
       - `bucketSpec: Option[BucketSpec] = None`
       - `provider: String`
       - `options: Map[String, String]`
      
      This class is responsible for deciding which of the Data Source APIs a given provider is using (including the non-file based ones).  All reconciliation of partitions, buckets, schema from metastores or inference is done here.
      
      ### DataSourceAnalysis / DataSourceStrategy
      Responsible for analyzing and planning reading/writing of data using any of the Data Source APIs, including:
       - pruning the files from partitions that will be read based on filters.
       - appending partition columns*
       - applying additional filters when a data source can not evaluate them internally.
       - constructing an RDD that is bucketed correctly when required*
       - sanity checking schema match-up and other analysis when writing.
      
      *In the future we should do that following:
       - Break out file handling into its own Strategy as its sufficiently complex / isolated.
       - Push the appending of partition columns down in to `FileFormat` to avoid an extra copy / unvectorization.
       - Use a custom RDD for scans instead of `SQLNewNewHadoopRDD2`
      
      Author: Michael Armbrust <michael@databricks.com>
      Author: Wenchen Fan <wenchen@databricks.com>
      
      Closes #11509 from marmbrus/fileDataSource.
      e720dda4
    • S
      [SPARK-13596][BUILD] Move misc top-level build files into appropriate subdirs · 0eea12a3
      Sean Owen 提交于
      ## What changes were proposed in this pull request?
      
      Move many top-level files in dev/ or other appropriate directory. In particular, put `make-distribution.sh` in `dev` and update docs accordingly. Remove deprecated `sbt/sbt`.
      
      I was (so far) unable to figure out how to move `tox.ini`. `scalastyle-config.xml` should be movable but edits to the project `.sbt` files didn't work; config file location is updatable for compile but not test scope.
      
      ## How was this patch tested?
      
      `./dev/run-tests` to verify RAT and checkstyle work. Jenkins tests for the rest.
      
      Author: Sean Owen <sowen@cloudera.com>
      
      Closes #11522 from srowen/SPARK-13596.
      0eea12a3
    • H
      [SPARK-13442][SQL] Make type inference recognize boolean types · 8577260a
      hyukjinkwon 提交于
      ## What changes were proposed in this pull request?
      
      https://issues.apache.org/jira/browse/SPARK-13442
      
      This PR adds the support for inferring `BooleanType` for schema.
      It supports to infer case-insensitive `true` / `false` as `BooleanType`.
      
      Unittests were added for `CSVInferSchemaSuite` and `CSVSuite` for end-to-end test.
      
      ## How was the this patch tested?
      
      This was tested with unittests and with `dev/run_tests` for coding style
      
      Author: hyukjinkwon <gurwls223@gmail.com>
      
      Closes #11315 from HyukjinKwon/SPARK-13442.
      8577260a
    • M
      [SPARK-529][CORE][YARN] Add type-safe config keys to SparkConf. · e1fb8579
      Marcelo Vanzin 提交于
      This is, in a way, the basics to enable SPARK-529 (which was closed as
      won't fix but I think is still valuable). In fact, Spark SQL created
      something for that, and this change basically factors out that code
      and inserts it into SparkConf, with some extra bells and whistles.
      
      To showcase the usage of this pattern, I modified the YARN backend
      to use the new config keys (defined in the new `config` package object
      under `o.a.s.deploy.yarn`). Most of the changes are mechanic, although
      logic had to be slightly modified in a handful of places.
      
      Author: Marcelo Vanzin <vanzin@cloudera.com>
      
      Closes #10205 from vanzin/conf-opts.
      e1fb8579
    • J
      [SPARK-13655] Improve isolation between tests in KinesisBackedBlockRDDSuite · e9e67b39
      Josh Rosen 提交于
      This patch modifies `KinesisBackedBlockRDDTests` to increase the isolation between tests in order to fix a bug which causes the tests to hang.
      
      See #11558 for more details.
      
      /cc zsxwing srowen
      
      Author: Josh Rosen <joshrosen@databricks.com>
      
      Closes #11564 from JoshRosen/SPARK-13655.
      e9e67b39
    • G
      [SPARK-13722][SQL] No Push Down for Non-deterministics Predicates through Generate · b6071a70
      gatorsmile 提交于
      #### What changes were proposed in this pull request?
      
      Non-deterministic predicates should not be pushed through Generate.
      
      #### How was this patch tested?
      
      Added a test case in `FilterPushdownSuite.scala`
      
      Author: gatorsmile <gatorsmile@gmail.com>
      
      Closes #11562 from gatorsmile/pushPredicateDownWindow.
      b6071a70
    • C
      [MINOR][DOC] improve the doc for "spark.memory.offHeap.size" · a3ec50a4
      CodingCat 提交于
      The description of "spark.memory.offHeap.size" in the current document does not clearly state that memory is counted with bytes....
      
      This PR contains a small fix for this tiny issue
      
      document fix
      
      Author: CodingCat <zhunansjtu@gmail.com>
      
      Closes #11561 from CodingCat/master.
      a3ec50a4
    • D
      [SPARK-12243][BUILD][PYTHON] PySpark tests are slow in Jenkins. · e72914f3
      Dongjoon Hyun 提交于
      ## What changes were proposed in this pull request?
      
      In the Jenkins pull request builder, PySpark tests take around [962 seconds ](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/52530/console) of end-to-end time to run, despite the fact that we run four Python test suites in parallel. According to the log, the basic reason is that the long running test starts at the end due to FIFO queue. We first try to reduce the test time by just starting some long running tests first with simple priority queue.
      
      ```
      ========================================================================
      Running PySpark tests
      ========================================================================
      ...
      Finished test(python3.4): pyspark.streaming.tests (213s)
      Finished test(pypy): pyspark.sql.tests (92s)
      Finished test(pypy): pyspark.streaming.tests (280s)
      Tests passed in 962 seconds
      ```
      
      ## How was this patch tested?
      
      Manual check.
      Check 'Running PySpark tests' part of the Jenkins log.
      
      Author: Dongjoon Hyun <dongjoon@apache.org>
      
      Closes #11551 from dongjoon-hyun/SPARK-12243.
      e72914f3
    • S
      [SPARK-13495][SQL] Add Null Filters in the query plan for Filters/Joins based... · ef770031
      Sameer Agarwal 提交于
      [SPARK-13495][SQL] Add Null Filters in the query plan for Filters/Joins based on their data constraints
      
      ## What changes were proposed in this pull request?
      
      This PR adds an optimizer rule to eliminate reading (unnecessary) NULL values if they are not required for correctness by inserting `isNotNull` filters is the query plan. These filters are currently inserted beneath existing `Filter` and `Join` operators and are inferred based on their data constraints.
      
      Note: While this optimization is applicable to all types of join, it primarily benefits `Inner` and `LeftSemi` joins.
      
      ## How was this patch tested?
      
      1. Added a new `NullFilteringSuite` that tests for `IsNotNull` filters in the query plan for joins and filters. Also, tests interaction with the `CombineFilters` optimizer rules.
      2. Test generated ExpressionTrees via `OrcFilterSuite`
      3. Test filter source pushdown logic via `SimpleTextHadoopFsRelationSuite`
      
      cc yhuai nongli
      
      Author: Sameer Agarwal <sameer@databricks.com>
      
      Closes #11372 from sameeragarwal/gen-isnotnull.
      ef770031
    • W
      [SPARK-13694][SQL] QueryPlan.expressions should always include all expressions · 48964111
      Wenchen Fan 提交于
      ## What changes were proposed in this pull request?
      
      It's weird that expressions don't always have all the expressions in it. This PR marks `QueryPlan.expressions` final to forbid sub classes overriding it to exclude some expressions. Currently only `Generate` override it, we can use `producedAttributes` to fix the unresolved attribute problem for it.
      
      Note that this PR doesn't fix the problem in #11497
      
      ## How was this patch tested?
      
      existing tests.
      
      Author: Wenchen Fan <wenchen@databricks.com>
      
      Closes #11532 from cloud-fan/generate.
      48964111
    • D
      [SPARK-13651] Generator outputs are not resolved correctly resulting in run time error · d7eac9d7
      Dilip Biswal 提交于
      ## What changes were proposed in this pull request?
      
      ```
      Seq(("id1", "value1")).toDF("key", "value").registerTempTable("src")
      sqlContext.sql("SELECT t1.* FROM src LATERAL VIEW explode(map('key1', 100, 'key2', 200)) t1 AS key, value")
      ```
      Results in following logical plan
      
      ```
      Project [key#2,value#3]
      +- Generate explode(HiveGenericUDF#org.apache.hadoop.hive.ql.udf.generic.GenericUDFMap(key1,100,key2,200)), true, false, Some(genoutput), [key#2,value#3]
         +- SubqueryAlias src
            +- Project [_1#0 AS key#2,_2#1 AS value#3]
               +- LocalRelation [_1#0,_2#1], [[id1,value1]]
      ```
      
      The above query fails with following runtime error.
      ```
      java.lang.ClassCastException: java.lang.Integer cannot be cast to org.apache.spark.unsafe.types.UTF8String
      	at org.apache.spark.sql.catalyst.expressions.BaseGenericInternalRow$class.getUTF8String(rows.scala:46)
      	at org.apache.spark.sql.catalyst.expressions.GenericInternalRow.getUTF8String(rows.scala:221)
      	at org.apache.spark.sql.catalyst.expressions.GeneratedClass$SpecificUnsafeProjection.apply(generated.java:42)
      	at org.apache.spark.sql.execution.Generate$$anonfun$doExecute$1$$anonfun$apply$9.apply(Generate.scala:98)
      	at org.apache.spark.sql.execution.Generate$$anonfun$doExecute$1$$anonfun$apply$9.apply(Generate.scala:96)
      	at scala.collection.Iterator$$anon$11.next(Iterator.scala:370)
      	at scala.collection.Iterator$$anon$11.next(Iterator.scala:370)
      	at scala.collection.Iterator$class.foreach(Iterator.scala:742)
      	at scala.collection.AbstractIterator.foreach(Iterator.scala:1194)
              <stack-trace omitted.....>
      ```
      In this case the generated outputs are wrongly resolved from its child (LocalRelation) due to
      https://github.com/apache/spark/blob/master/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/analysis/Analyzer.scala#L537-L548
      ## How was this patch tested?
      
      (Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
      
      Added unit tests in hive/SQLQuerySuite and AnalysisSuite
      
      Author: Dilip Biswal <dbiswal@us.ibm.com>
      
      Closes #11497 from dilipbiswal/spark-13651.
      d7eac9d7
  3. 07 3月, 2016 4 次提交
    • Y
      Fixing the type of the sentiment happiness value · 03f57a6c
      Yury Liavitski 提交于
      ## What changes were proposed in this pull request?
      
      Added the conversion to int for the 'happiness value' read from the file. Otherwise, later on line 75 the multiplication will multiply a string by a number, yielding values like "-2-2" instead of -4.
      
      ## How was this patch tested?
      
      Tested manually.
      
      Author: Yury Liavitski <seconds.before@gmail.com>
      Author: Yury Liavitski <yury.liavitski@il111.ice.local>
      
      Closes #11540 from heliocentrist/fix-sentiment-value-type.
      03f57a6c
    • R
      [SPARK-13705][DOCS] UpdateStateByKey Operation documentation incorrectly... · 4b13896e
      rmishra 提交于
      [SPARK-13705][DOCS] UpdateStateByKey Operation documentation incorrectly refers to StatefulNetworkWordCount
      
      ## What changes were proposed in this pull request?
      The reference to StatefulNetworkWordCount.scala from updateStatesByKey documentation should be removed, till there is a example for updateStatesByKey.
      
      ## How was this patch tested?
      Have tested the new documentation with jekyll build.
      
      Author: rmishra <rmishra@pivotal.io>
      
      Closes #11545 from rishitesh/SPARK-13705.
      4b13896e
    • A
      [SPARK-13685][SQL] Rename catalog.Catalog to ExternalCatalog · bc7a3ec2
      Andrew Or 提交于
      ## What changes were proposed in this pull request?
      
      Today we have `analysis.Catalog` and `catalog.Catalog`. In the future the former will call the latter. When that happens, if both of them are still called `Catalog` it will be very confusing. This patch renames the latter `ExternalCatalog` because it is expected to talk to external systems.
      
      ## How was this patch tested?
      
      Jenkins.
      
      Author: Andrew Or <andrew@databricks.com>
      
      Closes #11526 from andrewor14/rename-catalog.
      bc7a3ec2
    • S
      [SPARK-13697] [PYSPARK] Fix the missing module name of TransformFunctionSerializer.loads · ee913e6e
      Shixiong Zhu 提交于
      ## What changes were proposed in this pull request?
      
      Set the function's module name to `__main__` if it's missing in `TransformFunctionSerializer.loads`.
      
      ## How was this patch tested?
      
      Manually test in the shell.
      
      Before this patch:
      ```
      >>> from pyspark.streaming import StreamingContext
      >>> from pyspark.streaming.util import TransformFunction
      >>> ssc = StreamingContext(sc, 1)
      >>> func = TransformFunction(sc, lambda x: x, sc.serializer)
      >>> func.rdd_wrapper(lambda x: x)
      TransformFunction(<function <lambda> at 0x106ac8b18>)
      >>> bytes = bytearray(ssc._transformerSerializer.serializer.dumps((func.func, func.rdd_wrap_func, func.deserializers)))
      >>> func2 = ssc._transformerSerializer.loads(bytes)
      >>> print(func2.func.__module__)
      None
      >>> print(func2.rdd_wrap_func.__module__)
      None
      >>>
      ```
      After this patch:
      ```
      >>> from pyspark.streaming import StreamingContext
      >>> from pyspark.streaming.util import TransformFunction
      >>> ssc = StreamingContext(sc, 1)
      >>> func = TransformFunction(sc, lambda x: x, sc.serializer)
      >>> func.rdd_wrapper(lambda x: x)
      TransformFunction(<function <lambda> at 0x108bf1b90>)
      >>> bytes = bytearray(ssc._transformerSerializer.serializer.dumps((func.func, func.rdd_wrap_func, func.deserializers)))
      >>> func2 = ssc._transformerSerializer.loads(bytes)
      >>> print(func2.func.__module__)
      __main__
      >>> print(func2.rdd_wrap_func.__module__)
      __main__
      >>>
      ```
      
      Author: Shixiong Zhu <shixiong@databricks.com>
      
      Closes #11535 from zsxwing/loads-module.
      ee913e6e
  4. 06 3月, 2016 2 次提交
  5. 05 3月, 2016 7 次提交
    • G
      [SPARK-12720][SQL] SQL Generation Support for Cube, Rollup, and Grouping Sets · adce5ee7
      gatorsmile 提交于
      #### What changes were proposed in this pull request?
      
      This PR is for supporting SQL generation for cube, rollup and grouping sets.
      
      For example, a query using rollup:
      ```SQL
      SELECT count(*) as cnt, key % 5, grouping_id() FROM t1 GROUP BY key % 5 WITH ROLLUP
      ```
      Original logical plan:
      ```
        Aggregate [(key#17L % cast(5 as bigint))#47L,grouping__id#46],
                  [(count(1),mode=Complete,isDistinct=false) AS cnt#43L,
                   (key#17L % cast(5 as bigint))#47L AS _c1#45L,
                   grouping__id#46 AS _c2#44]
        +- Expand [List(key#17L, value#18, (key#17L % cast(5 as bigint))#47L, 0),
                   List(key#17L, value#18, null, 1)],
                  [key#17L,value#18,(key#17L % cast(5 as bigint))#47L,grouping__id#46]
           +- Project [key#17L,
                       value#18,
                       (key#17L % cast(5 as bigint)) AS (key#17L % cast(5 as bigint))#47L]
              +- Subquery t1
                 +- Relation[key#17L,value#18] ParquetRelation
      ```
      Converted SQL:
      ```SQL
        SELECT count( 1) AS `cnt`,
               (`t1`.`key` % CAST(5 AS BIGINT)),
               grouping_id() AS `_c2`
        FROM `default`.`t1`
        GROUP BY (`t1`.`key` % CAST(5 AS BIGINT))
        GROUPING SETS (((`t1`.`key` % CAST(5 AS BIGINT))), ())
      ```
      
      #### How was the this patch tested?
      
      Added eight test cases in `LogicalPlanToSQLSuite`.
      
      Author: gatorsmile <gatorsmile@gmail.com>
      Author: xiaoli <lixiao1983@gmail.com>
      Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>
      
      Closes #11283 from gatorsmile/groupingSetsToSQL.
      adce5ee7
    • J
      [SPARK-12073][STREAMING] backpressure rate controller consumes events preferentially from lagg… · f19228ee
      Jason White 提交于
      …ing partitions
      
      I'm pretty sure this is the reason we couldn't easily recover from an unbalanced Kafka partition under heavy load when using backpressure.
      
      `maxMessagesPerPartition` calculates an appropriate limit for the message rate from all partitions, and then divides by the number of partitions to determine how many messages to retrieve per partition. The problem with this approach is that when one partition is behind by millions of records (due to random Kafka issues), but the rate estimator calculates only 100k total messages can be retrieved, each partition (out of say 32) only retrieves max 100k/32=3125 messages.
      
      This PR (still needing a test) determines a per-partition desired message count by using the current lag for each partition to preferentially weight the total message limit among the partitions. In this situation, if each partition gets 1k messages, but 1 partition starts 1M behind, then the total number of messages to retrieve is (32 * 1k + 1M) = 1032000 messages, of which the one partition needs 1001000. So, it gets (1001000 / 1032000) = 97% of the 100k messages, and the other 31 partitions share the remaining 3%.
      
      Assuming all of 100k the messages are retrieved and processed within the batch window, the rate calculator will increase the number of messages to retrieve in the next batch, until it reaches a new stable point or the backlog is finished processed.
      
      We're going to try deploying this internally at Shopify to see if this resolves our issue.
      
      tdas koeninger holdenk
      
      Author: Jason White <jason.white@shopify.com>
      
      Closes #10089 from JasonMWhite/rate_controller_offsets.
      f19228ee
    • N
      [SPARK-13255] [SQL] Update vectorized reader to directly return ColumnarBatch... · a6e2bd31
      Nong Li 提交于
      [SPARK-13255] [SQL] Update vectorized reader to directly return ColumnarBatch instead of InternalRows.
      
      ## What changes were proposed in this pull request?
      
      (Please fill in changes proposed in this fix)
      
      Currently, the parquet reader returns rows one by one which is bad for performance. This patch
      updates the reader to directly return ColumnarBatches. This is only enabled with whole stage
      codegen, which is the only operator currently that is able to consume ColumnarBatches (instead
      of rows). The current implementation is a bit of a hack to get this to work and we should do
      more refactoring of these low level interfaces to make this work better.
      
      ## How was this patch tested?
      
      ```
      Results:
      TPCDS:                             Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)
      ---------------------------------------------------------------------------------
      q55 (before)                             8897 / 9265         12.9          77.2
      q55                                      5486 / 5753         21.0          47.6
      ```
      
      Author: Nong Li <nong@databricks.com>
      
      Closes #11435 from nongli/spark-13255.
      a6e2bd31
    • A
      [SPARK-13459][WEB UI] Separate Alive and Dead Executors in Executor Totals Table · 5f42c28b
      Alex Bozarth 提交于
      ## What changes were proposed in this pull request?
      
      Now that dead executors are shown in the executors table (#10058) the totals table is updated to include the separate totals for alive and dead executors as well as the current total, as originally discussed in #10668
      
      ## How was this patch tested?
      
      Manually verified by running the Standalone Web UI in the latest Safari and Firefox ESR
      
      Author: Alex Bozarth <ajbozart@us.ibm.com>
      
      Closes #11381 from ajbozarth/spark13459.
      5f42c28b
    • A
      [SPARK-13633][SQL] Move things into catalyst.parser package · b7d41474
      Andrew Or 提交于
      ## What changes were proposed in this pull request?
      
      This patch simply moves things to existing package `o.a.s.sql.catalyst.parser` in an effort to reduce the size of the diff in #11048. This is conceptually the same as a recently merged patch #11482.
      
      ## How was this patch tested?
      
      Jenkins.
      
      Author: Andrew Or <andrew@databricks.com>
      
      Closes #11506 from andrewor14/parser-package.
      b7d41474
    • X
      [SPARK-13036][SPARK-13318][SPARK-13319] Add save/load for feature.py · 83302c3b
      Xusen Yin 提交于
      Add save/load for feature.py. Meanwhile, add save/load for `ElementwiseProduct` in Scala side and fix a bug of missing `setDefault` in `VectorSlicer` and `StopWordsRemover`.
      
      In this PR I ignore the `RFormula` and `RFormulaModel` because its Scala implementation is pending in https://github.com/apache/spark/pull/9884. I'll add them in this PR if https://github.com/apache/spark/pull/9884 gets merged first. Or add a follow-up JIRA for `RFormula`.
      
      Author: Xusen Yin <yinxusen@gmail.com>
      
      Closes #11203 from yinxusen/SPARK-13036.
      83302c3b
    • D
      [SPARK-13676] Fix mismatched default values for regParam in LogisticRegression · c8f25459
      Dongjoon Hyun 提交于
      ## What changes were proposed in this pull request?
      
      The default value of regularization parameter for `LogisticRegression` algorithm is different in Scala and Python. We should provide the same value.
      
      **Scala**
      ```
      scala> new org.apache.spark.ml.classification.LogisticRegression().getRegParam
      res0: Double = 0.0
      ```
      
      **Python**
      ```
      >>> from pyspark.ml.classification import LogisticRegression
      >>> LogisticRegression().getRegParam()
      0.1
      ```
      
      ## How was this patch tested?
      manual. Check the following in `pyspark`.
      ```
      >>> from pyspark.ml.classification import LogisticRegression
      >>> LogisticRegression().getRegParam()
      0.0
      ```
      
      Author: Dongjoon Hyun <dongjoon@apache.org>
      
      Closes #11519 from dongjoon-hyun/SPARK-13676.
      c8f25459
  6. 04 3月, 2016 5 次提交
    • M
      [SPARK-13673][WINDOWS] Fixed not to pollute environment variables. · e6175082
      Masayoshi TSUZUKI 提交于
      ## What changes were proposed in this pull request?
      
      This patch fixes the problem that `bin\beeline.cmd` pollutes environment variables.
      The similar problem is reported and fixed in https://issues.apache.org/jira/browse/SPARK-3943, but `bin\beeline.cmd` seems to be added later.
      
      ## How was this patch tested?
      
      manual tests:
        I executed the new `bin\beeline.cmd` and confirmed that %SPARK_HOME% doesn't remain in the command prompt.
      
      Author: Masayoshi TSUZUKI <tsudukim@oss.nttdata.co.jp>
      
      Closes #11516 from tsudukim/feature/SPARK-13673.
      e6175082
    • R
      [SPARK-12925] Improve HiveInspectors.unwrap for StringObjectInspector.… · 204b02b5
      Rajesh Balamohan 提交于
      Earlier fix did not copy the bytes and it is possible for higher level to reuse Text object. This was causing issues. Proposed fix now copies the bytes from Text. This still avoids the expensive encoding/decoding
      
      Author: Rajesh Balamohan <rbalamohan@apache.org>
      
      Closes #11477 from rajeshbalamohan/SPARK-12925.2.
      204b02b5
    • H
      [SPARK-13398][STREAMING] Move away from thread pool task support to forkjoin · c04dc27c
      Holden Karau 提交于
      ## What changes were proposed in this pull request?
      
      Remove old deprecated ThreadPoolExecutor and replace with ExecutionContext using a ForkJoinPool. The downside of this is that scala's ForkJoinPool doesn't give us a way to specify the thread pool name (and is a wrapper of Java's in 2.12) except by providing a custom factory. Note that we can't use Java's ForkJoinPool directly in Scala 2.11 since it uses a ExecutionContext which reports system parallelism. One other implicit change that happens is the old ExecutionContext would have reported a different default parallelism since it used system parallelism rather than threadpool parallelism (this was likely not intended but also likely not a huge difference).
      
      The previous version of this PR attempted to use an execution context constructed on the ThreadPool (but not the deprecated ThreadPoolExecutor class) so as to keep the ability to have human readable named threads but this reported system parallelism.
      
      ## How was this patch tested?
      
      unit tests: streaming/testOnly org.apache.spark.streaming.util.*
      
      Author: Holden Karau <holden@us.ibm.com>
      
      Closes #11423 from holdenk/SPARK-13398-move-away-from-ThreadPoolTaskSupport-java-forkjoin.
      c04dc27c
    • A
      [SPARK-13646][MLLIB] QuantileDiscretizer counts dataset twice in get… · 27e88faa
      Abou Haydar Elias 提交于
      ## What changes were proposed in this pull request?
      
      It avoids counting the dataframe twice.
      
      Author: Abou Haydar Elias <abouhaydar.elias@gmail.com>
      Author: Elie A <abouhaydar.elias@gmail.com>
      
      Closes #11491 from eliasah/quantile-discretizer-patch.
      27e88faa
    • D
      [SPARK-13603][SQL] support SQL generation for subquery · dd83c209
      Davies Liu 提交于
      ## What changes were proposed in this pull request?
      
      This is support SQL generation for subquery expressions, which will be replaced to a SubqueryHolder inside SQLBuilder recursively.
      
      ## How was this patch tested?
      
      Added unit tests.
      
      Author: Davies Liu <davies@databricks.com>
      
      Closes #11453 from davies/sql_subquery.
      dd83c209