From the documentation at http://docs.vagrantup.com/v2/getting-started/project_setup.html

"The Vagrantfile is meant to be committed to version control with your project, if you use version control. This way, every person working with that project can benefit from Vagrant without any upfront work."

Documented at http://docs.vagrantup.com/v2/getting-started/project_setup.html

These files are created automatically the first time a vagrant box is started.

Vim creates buffer swapfiles starting at .swp for buffers that are
active but untitled and unsaved.

Changed line matching vim swapfiles to use all names it will create as described in http://vimdoc.sourceforge.net/htmldoc/recover.html#E326

See http://en.wikipedia.org/wiki/Windows_thumbnail_cache#Thumbs.db

It contains project specific configuration, and should therefore by
checked into version control (as documented on
http://www.sublimetext.com/docs/2/projects.html)

Include .netrwhist, the user's history and potential privacy concern. See: http://stackoverflow.com/questions/9850360/

Including mexglx, mexa64, mexmaci64, mexw32 & mex64 (see
http://sfwn.in/FxbE for official list from Mathworks).

Org-mode stores archived TODOs from todo.org into todo.org_archive. It also
creates .org-id-locations in some cases.

*** .externalToolBuilders/
This directory stores project-specific launch configurations for external tool builders, such as ant tasks that have to be executed to fulfill the build lifecycle

*** *.launch
It is possible to store "eclipse launch configurations" in external files. These (XML-)files may be stored anywhere within your projects and will be discovered by Eclipse automagically.

The .gitignore rule "Icon?" will also match directories such as
"icons/", at least on a case-insensitive file-system (this happened to
me on OS X 10.7). I only noticed this several days later because a
developer was complaining about missing icons in his repository. I don't
really know what type of files this rule is supposed to match, but I
guess the described behavior is not expected.