Update all "incubator-skywalking" to "skywalking" ,"incubator-servicecomb-java-chassis" to "servicecomb-java-chassis" correctly, and ".gitmodules" will update at #2531 (#2548)

* Update new protocol

* Support new protocol at agent side.

* Fix test case.

* Make backend supports new trace protocol

* Fix tests.

* Make all new services available in gRPC.

* Fix bugs.

* Finish new document for v2 trace protocol.

* Fix wrong version requirement of zk

* Fix trace query bug.

* Find a client side dictionary bug.

* Fix register bugs.

* Fix break doc links.

* Add more documents for v6.

* Make default setting consistent .

* fix based on org.apache.skywalking.apm.agent.core.context.trace.AbstractTracingSpan.logs

* Fix Code Bug

* Fix Doc

* Fix link to proto files

* Fix proto path.