[CustomDevice] fix exit order (#42088)

python/paddle/fluid/__init__.py

@@ -227,7 +227,9 @@ if core.is_compiled_with_npu():
     atexit.register(core.npu_finalize)
 # NOTE(Aurelius84): clean up ExecutorCacheInfo in advance manually.
 atexit.register(core.clear_executor_cache)
+
 # NOTE(Aganlengzi): clean up KernelFactory in advance manually.
-atexit.register(core.clear_kernel_factory)
 # NOTE(wangran16): clean up DeviceManger in advance manually.
+# Keep clear_kernel_factory running before clear_device_manager
 atexit.register(core.clear_device_manager)
+atexit.register(core.clear_kernel_factory)