1. v2.layer.parse_network does not correctly handle the generation output.
2. GatherAgentLayer does not correctly handle generation output when batch_size > 1
3. Fix CustomStackTrace for rnn group

No longer need to specify target_inlinks or is_seq.

print_layer is used to print the values of a layer when evaluating the model for debugging purpose. No layer depends on print_layer. It should be added to the topology if it is used to print some layer already in the topology.

* Change build process to generate v2 documentation
* Add directory for v2 api
* Correct sphinx index soft-link