By shell command

```bash
sed -i 's#ifdef PADDLE_ONLY_CPU#ifndef PADDLE_WITH_GPU#g' `find ./paddle/ -name '*.h' -o -name '*.cc' -o -name '*.cpp' -o -name '*.c' -o -name '*.cu'`
sed -i 's#ifndef PADDLE_ONLY_CPU#ifdef PADDLE_WITH_GPU#g' `find ./paddle/ -name '*.h' -o -name '*.cc' -o -name '*.cpp' -o -name '*.c' -o -name '*.cu'`
```

Change the CpuMatrix::copyFrom and CpuVector::copyFrom with the stream parameter to the synchronous interface.

This only fixes the issue for ATLAS
MKL is still another fix.