Resovle conflict with upstream/develop

cmake/cblas.cmake

@@ -16,7 +16,8 @@
 set(CBLAS_FOUND OFF)
 
 ## Find MKL First.
-set(MKL_ROOT $ENV{MKLROOT} CACHE PATH "Folder contains MKL")
+set(INTEL_ROOT "/opt/intel" CACHE PATH "Folder contains intel libs")
+set(MKL_ROOT ${INTEL_ROOT}/mkl CACHE PATH "Folder contains MKL")
 
 find_path(MKL_INCLUDE_DIR mkl.h PATHS
   ${MKL_ROOT}/include)

demo/mnist/api_train_v2.py

+from paddle.trainer_config_helpers import *
+from paddle.trainer.PyDataProvider2 import dense_vector, integer_value
+import paddle.v2 as paddle
+import numpy
+import mnist_util
+
+
+def train_reader():
+    train_file = './data/raw_data/train'
+    generator = mnist_util.read_from_mnist(train_file)
+    for item in generator:
+        yield item
+
+
+def network_config():
+    imgs = data_layer(name='pixel', size=784)
+    hidden1 = fc_layer(input=imgs, size=200)
+    hidden2 = fc_layer(input=hidden1, size=200)
+    inference = fc_layer(input=hidden2, size=10, act=SoftmaxActivation())
+    cost = classification_cost(
+        input=inference, label=data_layer(
+            name='label', size=10))
+    outputs(cost)
+
+
+def main():
+    paddle.init(use_gpu=False, trainer_count=1)
+    topology = parse_network_config(network_config)
+    parameters = paddle.parameters.create(topology)
+    for param_name in parameters.keys():
+        array = parameters.get(param_name)
+        array[:] = numpy.random.uniform(low=-1.0, high=1.0, size=array.shape)
+        parameters.set(parameter_name=param_name, value=array)
+
+    adam_optimizer = paddle.optimizer.Optimizer(
+        learning_rate=0.01, learning_method=AdamOptimizer())
+
+    def event_handler(event):
+        if isinstance(event, paddle.event.EndIteration):
+            para = parameters.get('___fc_layer_2__.w0')
+            print "Pass %d, Batch %d, Cost %f, Weight Mean Of Fc 2 is %f" % (
+                event.pass_id, event.batch_id, event.cost, para.mean())
+
+        else:
+            pass
+
+    trainer = paddle.trainer.SGD(update_equation=adam_optimizer)
+
+    trainer.train(train_data_reader=train_reader,
+                  topology=topology,
+                  parameters=parameters,
+                  event_handler=event_handler,
+                  batch_size=32,  # batch size should be refactor in Data reader
+                  data_types={  # data_types will be removed, It should be in
+                      # network topology
+                      'pixel': dense_vector(784),
+                      'label': integer_value(10)
+                  })
+
+
+if __name__ == '__main__':
+    main()

python/paddle/v2/__init__.py

@@ -11,9 +11,21 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-
 import optimizer
 import layer
 import activation
+import parameters
+import trainer
+import event
+import py_paddle.swig_paddle as api
+
+
+__all__ = ['optimizer', 'layer', 'activation', 'parameters', 'init', 'trainer', 'event']
+
+
+def init(**kwargs):
+    args = []
+    for key in kwargs.keys():
+        args.append('--%s=%s' % (key, str(kwargs[key])))
 
-__all__ = ['optimizer', 'layer', 'activation']
+    api.initPaddle(*args)

python/paddle/v2/event.py

+"""
+All training events.
+
+There are:
+
+* BeginTraining
+* EndTraining
+* BeginIteration
+* EndIteration
+* BeginPass
+* EndPass
+
+TODO(yuyang18): Complete it!
+"""
+__all__ = ['EndIteration']
+
+
+class EndIteration(object):
+    """
+    Event On One Batch Training Complete.
+    """
+
+    def __init__(self, pass_id, batch_id, cost):
+        self.pass_id = pass_id
+        self.batch_id = batch_id
+        self.cost = cost

python/paddle/v2/parameters.py

+import numpy as np
+
+from paddle.proto.ModelConfig_pb2 import ModelConfig
+from paddle.proto.ParameterConfig_pb2 import ParameterConfig
+import py_paddle.swig_paddle as api
+
+__all__ = ['Parameters', 'create']
+
+
+def create(*topologies):
+    """
+    Create parameter pool by topologies.
+
+    :param topologies:
+    :return:
+    """
+    pool = Parameters()
+    for topo in topologies:
+        if not isinstance(topo, ModelConfig):
+            raise ValueError(
+                'create must pass a topologies which type is ModelConfig')
+
+        for param in topo.parameters:
+            pool.__append_config__(param)
+    return pool
+
+
+class Parameters(object):
+    """
+    Parameters is a dictionary contains Paddle's parameter. The key of
+    Parameters is the name of parameter. The value of Parameters is a plain
+    :code:`numpy.ndarry` .
+
+    Basically usage is
+
+    ..  code-block:: python
+
+        data = paddle.layers.data(...)
+        ...
+        out = paddle.layers.fc(...)
+
+        parameters = paddle.parameters.create(out)
+
+        parameter_names = parameters.names()
+        fc_mat = parameters.get('fc')
+        print fc_mat
+    """
+
+    def __init__(self):
+        self.__param_conf__ = dict()
+        self.__gradient_machines__ = []
+        self.__tmp_params__ = []
+
+    def __append_config__(self, param_conf):
+        """
+        Append a parameter configuration. It used to initialize Parameters and
+        should be invoked only in paddle.parameters.create
+
+        :param param_conf: The parameter configuration in protobuf
+        :type param_conf: ParameterConfig
+        :return: Nothing
+        """
+
+        if not isinstance(param_conf, ParameterConfig):
+            raise ValueError("param_conf must be paddle.proto.ParameterConfig")
+
+        if param_conf.name in self.__param_conf__:
+            raise ValueError("duplicated parameter %s" % param_conf.name)
+
+        self.__param_conf__[param_conf.name] = param_conf
+
+    def keys(self):
+        """
+        keys are the names of each parameter.
+        :return: list of parameter name
+        :rtype: list
+        """
+        return self.__param_conf__.keys()
+
+    def names(self):
+        """
+        names of each parameter.
+        :return: list of parameter name
+        :rtype: list
+        """
+        return self.keys()
+
+    def has_key(self, key):
+        """
+        has_key return true if there are such parameter name == key
+        :param key: Parameter name
+        :type key: basestring
+        :return: True if contains such key
+        """
+        return key in self.__param_conf__.keys()
+
+    def __iter__(self):
+        """
+        Return an iterator of parameter name. It is used by `for loop`
+        or `in` operator.
+
+        ..  code-block:: python
+
+            parameters = paddle.parameters.create(...)
+            if "fc_param" in parameters:
+                print 'OK'
+        :return: an iterator of parameter name
+        :rtype: iterator
+        """
+        return iter(self.__param_conf__)
+
+    def __getitem__(self, key):
+        """
+        Get parameter by parameter name. It uses Python dict syntax.
+
+        :note: It will always copy the parameter from C++ side.
+        :param key: Parameter name
+        :type key: basestring
+        :return: parameter value
+        :rtype: np.ndarray
+        """
+        shape = self.get_shape(key)
+
+        if len(self.__gradient_machines__) == 0:
+            # create new parameter in python numpy.
+            return np.ndarray(shape=shape, dtype=np.float32)
+        else:
+            for each_gradient_machine in self.__gradient_machines__:
+                param = __get_parameter_in_gradient_machine__(
+                    each_gradient_machine, key)
+                # for simplify implementation now, we always copy from C++
+                assert isinstance(param, api.Parameter)
+                val = param.getBuf(api.PARAMETER_VALUE)
+                assert isinstance(val, api.Vector)
+                val = val.copyToNumpyArray()
+                return val
+                # else continue
+
+            raise RuntimeError("Unexpected branch")
+
+    def get_shape(self, key):
+        """
+        get shape of the parameter.
+        :param key: parameter name
+        :type key: basestring
+        :return: parameter's shape
+        :rtype: tuple
+        """
+        if not isinstance(key, basestring):
+            raise ValueError("parameter name should be string")
+        if not self.has_key(key):
+            raise ValueError("No such parameter %s" % key)
+        conf = self.__param_conf__[key]
+        return tuple(map(int, conf.dims))
+
+    def __setitem__(self, key, value):
+        """
+        Set parameter by parameter name & value. It use Python dict syntax.
+
+        :note: It will always copy the parameter to C++ side.
+        :param key: Parameter name
+        :type key: basestring
+        :param value: Parameter matrix.
+        :type value: np.ndarray
+        :return: Nothing
+        """
+
+        if not isinstance(value, np.ndarray):
+            raise ValueError("Must return ndarray")
+        value = value.astype(dtype=np.float32)
+        shape = self.get_shape(key)
+        if value.shape != shape:
+            raise ValueError("Value shape mismatch, expect %s, should %s" %
+                             (shape, value.shape))
+
+        if len(self.__gradient_machines__) == 0:
+            self.__tmp_params__.append((key, value))
+        else:
+            for each_gradient_machine in self.__gradient_machines__:
+                __copy_parameter_to_gradient_machine__(each_gradient_machine,
+                                                       key, value)
+
+    def get(self, parameter_name):
+        """
+        Get parameter by parameter name.
+
+        :note: It will always copy the parameter from C++ side.
+        :param parameter_name: parameter name
+        :type parameter_name: basestring
+        :return: The parameter matrix.
+        :rtype: np.ndarray
+        """
+        return self.__getitem__(key=parameter_name)
+
+    def set(self, parameter_name, value):
+        """
+        Set parameter by parameter name & matrix.
+        :param parameter_name: parameter name
+        :type parameter_name: basestring
+        :param value: parameter matrix
+        :type value: np.ndarray
+        :return: Nothing.
+        """
+        self.__setitem__(key=parameter_name, value=value)
+
+    def append_gradient_machine(self, gradient_machine):
+        """
+        append gradient machine to parameters. This method is used internally in
+        Trainer.train.
+
+        :param gradient_machine: Paddle C++ GradientMachine object.
+        :type gradient_machine: api.GradientMachine
+        :return:
+        """
+
+        if not isinstance(gradient_machine, api.GradientMachine):
+            raise ValueError("gradient_machine should be api.GradientMachine")
+
+        if len(self.__tmp_params__) != 0:
+            for name, val in self.__tmp_params__:
+                try:
+                    __copy_parameter_to_gradient_machine__(gradient_machine,
+                                                           name, val)
+                except ValueError:
+                    # If no such parameter in gradient machine, then don't copy
+                    pass
+            self.__gradient_machines__.append(gradient_machine)
+
+
+def __get_parameter_in_gradient_machine__(gradient_machine, name):
+    """
+
+    :param gradient_machine:
+    :type gradient_machine: api.GradientMachine
+    :param name:
+    :return:
+    :rtype: api.Parameter
+    """
+    params = filter(lambda p: p.getName() == name,
+                    gradient_machine.getParameters())
+
+    if len(params) == 0:
+        raise ValueError("No such parameter")
+    elif len(params) > 1:
+        raise ValueError("Unexpected branch")
+    else:
+        return params[0]
+
+
+def __copy_parameter_to_gradient_machine__(gradient_machine, name, arr):
+    """
+    Copy a python ndarray into the gradient machine.
+
+    :param gradient_machine:
+    :type gradient_machine: api.GradientMachine
+    :param name:
+    :param arr:
+    :type arr: np.ndarray
+    :return:
+    :rtype: api.Parameter
+    """
+    param = __get_parameter_in_gradient_machine__(gradient_machine, name)
+    vec = param.getBuf(api.PARAMETER_VALUE)
+    assert isinstance(vec, api.Vector)
+    vec.copyFromNumpyArray(arr.flatten())

python/paddle/v2/trainer.py

+import collections
+
+import py_paddle.swig_paddle as api
+from py_paddle import DataProviderConverter
+
+from paddle.proto.ModelConfig_pb2 import ModelConfig
+from . import optimizer as v2_optimizer
+from . import parameters as v2_parameters
+from . import event as v2_event
+
+__all__ = ['ITrainer', 'SGD']
+
+
+def default_event_handler(event):
+    """
+    Default event handler. It will print some log and save mode.
+
+    TODO(yuyang18): Complete it!
+    :param event:
+    :return:
+    """
+    pass
+
+
+class ITrainer(object):
+    """
+    The interface of Trainer. The only exposed method is `train`.
+    """
+
+    def train(self,
+              train_data_reader,
+              topology,
+              parameters,
+              test_data_reader=None,
+              event_handler=None):
+        """
+        train method.
+
+        :param train_data_reader:
+        :param topology:
+        :param parameters:
+        :param test_data_reader:
+        :param event_handler:
+        :return:
+        """
+
+        raise NotImplementedError()
+
+
+class SGD(ITrainer):
+    def __init__(self, update_equation):
+        """
+        Simple SGD Trainer.
+
+        :param update_equation: The optimizer object.
+        :type update_equation: v2_optimizer.Optimizer
+        """
+        if not isinstance(update_equation, v2_optimizer.Optimizer):
+            raise ValueError("update equation parameter must be "
+                             "paddle.v2.optimizer.Optimizer")
+        self.__optimizer__ = update_equation
+
+    def train(self,
+              train_data_reader,
+              topology,
+              parameters,
+              num_passes=1,
+              test_data_reader=None,
+              event_handler=None,
+              batch_size=32,
+              data_types=None):
+        """
+        Training method. Will train num_passes of input data.
+
+        :param train_data_reader:
+        :param topology: Network Topology, a protobuf ModelConfig message.
+        :param parameters: The parameter pools.
+        :param num_passes: The total train passes.
+        :param test_data_reader:
+        :param event_handler: Event handler. A method will be invoked when event
+                              occurred.
+        :type event_handler: (BaseEvent) => None
+        :param batch_size: Not important, will be removed after data refactor.
+        :param data_types: Not important, will be removed after data refactor.
+        :return:
+        """
+        if event_handler is None:
+            event_handler = default_event_handler
+
+        __check_train_args__(**locals())
+
+        gm = api.GradientMachine.createFromConfigProto(
+            topology, api.CREATE_MODE_NORMAL, self.__optimizer__.enable_types())
+        assert isinstance(gm, api.GradientMachine)
+        parameters.append_gradient_machine(gm)
+
+        updater = self.__optimizer__.create_local_updater()
+        updater.init(gm)
+
+        gm.start()
+        out_args = api.Arguments.createArguments(0)
+
+        data_types_lists = []
+        for each in topology.input_layer_names:
+            if each not in data_types:
+                raise ValueError()
+            data_types_lists.append(data_types[each])
+
+        converter = DataProviderConverter(input_types=data_types_lists)
+
+        for pass_id in xrange(num_passes):
+            updater.startPass()
+            for batch_id, data_batch in enumerate(
+                    __data_reader_to_batch__(train_data_reader, batch_size,
+                                             topology)):
+                pass_type = updater.startBatch(len(data_batch))
+                gm.forwardBackward(converter(data_batch), out_args, pass_type)
+                for each_param in gm.getParameters():
+                    updater.update(each_param)
+                # Get cost. We use numpy to calculate total cost for this batch.
+                cost_vec = out_args.getSlotValue(0)
+                cost_vec = cost_vec.copyToNumpyMat()
+                cost = cost_vec.sum() / len(data_batch)
+                updater.finishBatch(cost)
+                event_handler(
+                    v2_event.EndIteration(
+                        pass_id=pass_id, batch_id=batch_id, cost=cost))
+
+            updater.finishPass()
+        gm.finish()
+
+
+def __data_reader_to_batch__(reader, batch_size, topology):
+    """
+    This function is not important, and will be removed when data refactored.
+    """
+
+    def input_reorder(func):
+        for item in func():
+            retv = []
+            for __layer_name__ in topology.input_layer_names:
+                retv.append(item[__layer_name__])
+            yield retv
+
+    return __generator_to_batch__(input_reorder(reader), batch_size=batch_size)
+
+
+def __generator_to_batch__(generator, batch_size):
+    """
+    This function is not important, and will be removed when data refactored.
+    """
+    ret_val = list()
+    for each_item in generator:
+        ret_val.append(each_item)
+        if len(ret_val) == batch_size:
+            yield ret_val
+            ret_val = list()
+    if len(ret_val) != 0:
+        yield ret_val
+
+
+def __check_train_args__(train_data_reader, topology, parameters,
+                         test_data_reader, event_handler, **kwargs):
+    """
+    Check train function's argument types
+    """
+    if not callable(train_data_reader) or not isinstance(train_data_reader(),
+                                                         collections.Iterator):
+        raise ValueError('train_data_reader should be a function, '
+                         'which can return a iterator')
+
+    if test_data_reader is not None:
+        if not callable(test_data_reader) or not isinstance(
+                test_data_reader(), collections.Iterator):
+            raise ValueError('test_data_reader should be a function, which can '
+                             'return a iterator')
+
+    if not isinstance(topology, ModelConfig):
+        raise ValueError('topology should be a model config')
+
+    if not isinstance(parameters, v2_parameters.Parameters):
+        raise ValueError('parameters should be a parameter pool')
+
+    if not callable(event_handler):
+        raise ValueError('event handler should be a function')