Merge branch 'develop' of github.com:baidu/Paddle into feature/uniform_random_op

cmake/cpplint.cmake

@@ -42,29 +42,21 @@ macro(add_style_check_target TARGET_NAME)
     if(WITH_STYLE_CHECK)
         set(SOURCES_LIST ${ARGN})
         list(REMOVE_DUPLICATES SOURCES_LIST)
-        list(SORT SOURCES_LIST)
-
         foreach(filename ${SOURCES_LIST})
-            set(LINT ON)
             foreach(pattern ${IGNORE_PATTERN})
                 if(filename MATCHES ${pattern})
-                    message(STATUS "DROP LINT ${filename}")
-                    set(LINT OFF)
+                    list(REMOVE_ITEM SOURCES_LIST ${filename})
                 endif()
             endforeach()
-            if(LINT MATCHES ON)
-                # cpplint code style
-                get_filename_component(base_filename ${filename} NAME)
-                set(CUR_GEN ${CMAKE_CURRENT_BINARY_DIR}/${base_filename}.cpplint)
-                add_custom_command(OUTPUT ${CUR_GEN} PRE_BUILD
-                    COMMAND "${PYTHON_EXECUTABLE}" "${PROJ_ROOT}/paddle/scripts/cpplint.py"
-                            "--filter=${STYLE_FILTER}"
-                            "--write-success=${CUR_GEN}" ${filename}
-                    DEPENDS ${filename} ${PROJ_ROOT}/paddle/scripts/cpplint.py
-                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})
-                add_custom_target(${base_filename}.cpplint DEPENDS ${CUR_GEN})
-                add_dependencies(${TARGET_NAME} ${base_filename}.cpplint)
-            endif()
         endforeach()
+
+        if(SOURCES_LIST)
+            add_custom_command(TARGET ${TARGET_NAME} POST_BUILD
+                COMMAND "${PYTHON_EXECUTABLE}" "${PROJ_ROOT}/paddle/scripts/cpplint.py"
+                        "--filter=${STYLE_FILTER}"
+                        ${SOURCES_LIST}
+                COMMENT "cpplint: Checking source code style"
+                WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR})        
+        endif()
     endif()
 endmacro()

cmake/flags.cmake

@@ -115,7 +115,7 @@ set(COMMON_FLAGS
     -Wno-error=literal-suffix
     -Wno-error=sign-compare
     -Wno-error=unused-local-typedefs
-    -Wno-error=parentheses-equality # Warnings in Pybind11
+    -Wno-error=parentheses-equality # Warnings in pybind11
 )
 
 set(GPU_COMMON_FLAGS
@@ -195,6 +195,7 @@ endif()
 # Modern gpu architectures: Pascal
 if (CUDA_VERSION VERSION_GREATER "8.0" OR CUDA_VERSION VERSION_EQUAL "8.0")
       list(APPEND __arch_flags " -gencode arch=compute_60,code=sm_60")
+      list(APPEND CUDA_NVCC_FLAGS --expt-relaxed-constexpr)
 endif()
 
 # Custom gpu architecture

doc/design/mkldnn/README.MD

+# Intel® MKL-DNN on PaddlePaddle: Design Doc
+
+我们计划将Intel深度神经网络数学库(**MKL-DNN**\[[1](#references)\])集成到PaddlePaddle，充分展现英特尔平台的优势，有效提升PaddlePaddle在英特尔架构上的性能。
+
+我们短期内的基本目标是：
+
+- 完成常用layer的MKL-DNN实现。
+- 完成常见深度神经网络VGG，GoogLeNet 和 ResNet的MKL-DNN实现。
+
+
+## Contents
+
+- [Overview](#overview)
+- [Actions](#actions)
+ 	- [CMake](#cmake)
+	- [Layers](#layers)
+	- [Activations](#activations)
+	- [Unit Tests](#unit-tests)
+	- [Protobuf Messages](#protobuf-messages)
+	- [Python API](#python-api)
+	- [Demos](#demos)
+	- [Benchmarking](#benchmarking)
+	- [Others](#others)
+- [Design Concerns](#design-concerns)
+
+## Overview
+
+我们会把MKL-DNN作为第三方库集成进PaddlePaddle，整体框架图
+<div align="center">
+<img src="image/overview.png" width=350><br/>
+Figure 1. PaddlePaddle on IA.
+</div>
+
+## Actions
+我们把集成方案大致分为了如下几个方面。
+
+### CMake
+我们会在`CMakeLists.txt`中会添加`WITH_MKLDNN`的选项，当设置这个值为`ON`的时候会启用编译MKL-DNN功能。同时会自动开启OpenMP用于提高MKL-DNN的性能。
+
+同时，我们会引入`WITH_MKLML`选项，用于选择是否使用MKL-DNN自带的MKLML安装包。这个安装包可以独立于MKL-DNN使用，但是建议在开启MKL-DNN的同时也打开MKLML的开关，这样才能发挥最好的性能。
+
+所以，我们会在`cmake/external`目录新建`mkldnn.cmake`和`mklml.cmake`文件，它们会在编译PaddlePaddle的时候下载对应的软件包，并放到PaddlePaddle的third party目录中。
+
+**备注**：当`WITH_MKLML=ON`的时候，会优先使用这个包作为PaddlePaddle的CBLAS和LAPACK库，所以会稍微改动`cmake/cblas.cmake`中的逻辑。
+
+### Layers
+所有MKL-DNN相关的C++ layers，都会按照PaddlePaddle的目录结构存放在
+`paddle/gserver/layers`中，并且文件名都会一以*Mkldnn*开头。
+
+所有MKL-DNN的layers都会继承于一个叫做`MkldnnLayer`的父类，该父类继承于PaddlePaddle的基类`Layer`。
+
+### Activations
+由于在PaddlePaddle中，激活函数是独立于layer概念的，所以会在`paddle/gserver/activations`目录下添加一个`MkldnnActivation.h`文件定义一些用于MKL-DNN的接口，实现方法还是会在`ActivationFunction.cpp`文件。
+
+### Unit Tests
+会在`paddle/gserver/test`目录下添加`test_Mkldnn.cpp`和`MkldnnTester.*`用于MKL-DNN的测试。
+
+Activation的测试，计划在PaddlePaddle原有的测试文件上直接添加新的测试type。
+
+### Protobuf Messages
+根据具体layer的需求可能会在`proto/ModelConfig.proto`里面添加必要的选项。
+
+### Python API
+目前只考虑**v1 API**。
+
+计划在`python/paddle/trainer/config_parser.py`里面添加`use_mkldnn`这个选择，方便用户选择使用MKL-DNN的layers。
+
+具体实现方式比如：
+
+```python
+use_mkldnn = bool(int(g_command_config_args.get("use_mkldnn", 0)))
+if use_mkldnn
+    self.layer_type = mkldnn_*
+```
+
+所有MKL-DNN的layer type会以*mkldnn_*开头，以示区分。 
+
+并且可能在`python/paddle/trainer_config_helper`目录下的`activations.py `和`layers.py`里面添加必要的MKL-DNN的接口。
+
+### Demos
+
+会在`v1_api_demo`目录下添加一个`mkldnn`的文件夹，里面放入一些用于MKL-DNN测试的demo脚本。
+
+### Benchmarking
+会考虑添加部分逻辑在`benchmark/paddle/image/run.sh`，添加使用MKL-DNN的测试。
+
+### Others
+1. 如果在使用MKL-DNN的情况下，会把CPU的Buffer对齐为64。
+2. 深入PaddlePaddle，寻找有没有其他可以优化的可能，进一步优化。比如可能会用OpenMP改进SGD的更新性能。
+
+## Design Concerns
+
+为了更好的符合PaddlePaddle的代码风格\[[2](#references)\]，同时又尽可能少的牺牲MKL-DNN的性能\[[3](#references)\]。
+
+我们总结出一些特别需要注意的点：
+
+1. 使用**deviceId_**。为了尽可能少的在父类Layer中添加变量或者函数，我们决定使用已有的`deviceId_`变量来区分layer的属性，定义`-2`为`MkldnnLayer`特有的设备ID。
+2. 重写父类Layer的**init**函数，修改`deviceId_`为`-2`，代表这个layer是用于跑在MKL-DNN的环境下。
+3. 创建`MkldnnMatrix`，用于管理MKL-DNN会用到的相关memory函数、接口以及会用的到格式信息。
+4. 创建`MkldnnBase`，定义一些除了layer和memory相关的类和函数。包括MKL-DNN会用到`MkldnnStream`和`CpuEngine`，和未来可能还会用到`FPGAEngine`等。
+5. 在**Argument**里添加两个`MkldnnMatrixPtr`，取名为`mkldnnValue`和`mkldnnGrad`，用于存放`MkldnnLayer`会用到的memory buffer。 并且添加函数cvt(会修改为一个更加合适的函数名)，用于处理"CPU device"和"MKL-DNN device"之间memory的相互转化。
+6. 在父类`Layer`中的`getOutput`函数中添加一段逻辑，用于判断`deviceId`，并针对device在MKL-DNN和CPU之间不统一的情况，做一个前期转换。 也就是调用`Argument`的cvt函数把output统一到需要的device上。
+7. 在原来的`FLAGS`中添加一个`use_mkldnn`的flag，用于选择是否使用MKL-DNN的相关功能。
+
+## References
+
+1. [Intel Math Kernel Library for Deep Neural Networks (Intel MKL-DNN)](https://github.com/01org/mkl-dnn "Intel MKL-DNN")
+2. [原来的方案](https://github.com/PaddlePaddle/Paddle/pull/3096)会引入**nextLayer**的信息。但是在PaddlePaddle中，无论是重构前的layer还是重构后的op，都不会想要知道next layer/op的信息。
+3. MKL-DNN的高性能格式与PaddlePaddle原有的`NCHW`不同(PaddlePaddle中的CUDNN部分使用的也是`NCHW`，所以不存在这个问题)，所以需要引入一个转换方法，并且只需要在必要的时候转换这种格式，才能更好的发挥MKL-DNN的性能。
+

paddle/CMakeLists.txt

@@ -22,7 +22,5 @@ if(WITH_C_API)
 endif()
 
 if(WITH_SWIG_PY)
-  configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup.py.in
-          ${CMAKE_CURRENT_SOURCE_DIR}/setup.py)
   add_subdirectory(api)
 endif()

paddle/api/CMakeLists.txt

@@ -82,9 +82,7 @@ SWIG_LINK_LIBRARIES(swig_paddle
 add_custom_command(OUTPUT ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so
     COMMAND cp ${CMAKE_CURRENT_BINARY_DIR}/swig_paddle.py ${PROJ_ROOT}/paddle/py_paddle
     COMMAND cp ${CMAKE_CURRENT_BINARY_DIR}/_swig_paddle.so ${PROJ_ROOT}/paddle/py_paddle
-    COMMAND env ${py_env} ${PYTHON_EXECUTABLE} setup.py bdist_wheel
-    COMMAND ${CMAKE_COMMAND} -E touch dist/.timestamp
-    COMMAND rm -rf py_paddle.egg-info build
+    COMMAND ${CMAKE_COMMAND} -E touch .timestamp
     WORKING_DIRECTORY ${PROJ_ROOT}/paddle
     DEPENDS _swig_paddle
 )
@@ -92,10 +90,6 @@ add_custom_command(OUTPUT ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so
 # TODO(yuyang18) : make wheel name calculated by cmake
 add_custom_target(python_api_wheel ALL DEPENDS ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so)
 
-install(DIRECTORY ${CMAKE_SOURCE_DIR}/paddle/dist/
-    DESTINATION opt/paddle/share/wheels
-)
-
 if(WITH_TESTING)
     IF(NOT PY_PIP_FOUND)
         SET(PIP_SOURCES_DIR ${PYTHON_SOURCES_DIR}/pip)
@@ -108,7 +102,7 @@ if(WITH_TESTING)
             BUILD_COMMAND       ""
             INSTALL_COMMAND     env ${py_env} ${PYTHON_EXECUTABLE} setup.py install
             BUILD_IN_SOURCE     1
-            DEPENDS python setuptools python_api_wheel
+            #DEPENDS python setuptools python_api_wheel
         )
     ENDIF()
     add_subdirectory(test)

paddle/framework/op_registry.h

@@ -260,6 +260,12 @@ class OpRegistry {
     return CreateOp(op_desc.type(), inputs, outputs, attrs);
   }
 
+  static bool SupportGPU(const std::string& op_type) {
+    OperatorWithKernel::OpKernelKey key;
+    key.place_ = platform::GPUPlace();
+    return OperatorWithKernel::AllOpKernels().at(op_type).count(key) != 0;
+  }
+
   static std::shared_ptr<OperatorBase> CreateGradOp(const OperatorBase& op) {
     PADDLE_ENFORCE(!op.IsNetOp(),
                    "Use framework::Backward to get backward ops");

paddle/framework/operator.h

@@ -174,7 +174,11 @@ class OperatorContext {
   template <typename T>
   T* Output(const size_t index) const {
     auto var = OutputVar(index);
-    PADDLE_ENFORCE(var != nullptr, "Output(%d) should not be nullptr", index);
+    PADDLE_ENFORCE(
+        var != nullptr,
+        "Output(%d) not be nullptr, which means variable [%s] does not "
+        "exist in scope",
+        index, op_.outputs_[index]);
     return var->GetMutable<T>();
   }
 

paddle/framework/pybind.cc

@@ -32,7 +32,7 @@ limitations under the License. */
 namespace py = pybind11;
 
 USE_OP(add_two);
-USE_OP(onehot_cross_entropy);
+USE_OP_CPU(onehot_cross_entropy);
 USE_OP_WITHOUT_KERNEL(fc);
 USE_OP(sgd);
 USE_OP(mul);
@@ -201,6 +201,8 @@ All parameter, weight, gradient are variables in Paddle.
     return OpRegistry::CreateOp(desc);
   });
 
+  operator_base.def_static("support_gpu", &OpRegistry::SupportGPU);
+
   operator_base.def("backward",
                     [](const OperatorBase &forwardOp,
                        const std::unordered_set<std::string> &no_grad_vars) {

paddle/gserver/tests/CMakeLists.txt

 # gserver pacakge unittests
 
-file(GLOB_RECURSE GSERVER_HEADER RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "*.h")
-file(GLOB_RECURSE GSERVER_SOURCES RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "*.cpp")
-add_style_check_target(paddle_gserver ${GSERVER_SOURCES})
-add_style_check_target(paddle_gserver ${GSERVER_HEADER})
-
 ################### test_ProtoDataProvider ############
 add_unittest_without_exec(test_ProtoDataProvider
     test_ProtoDataProvider.cpp)

paddle/operators/add_op.cc

@@ -20,8 +20,8 @@ namespace operators {
 class AddOp : public OperatorWithKernel {
  protected:
   void InferShape(const InferShapeContext &ctx) const override {
-    PADDLE_ENFORCE(ctx.InputSize() == 2, "Input size of AddOp must be two");
-    PADDLE_ENFORCE(ctx.OutputSize() == 1, "Output size of AddOp must be one");
+    PADDLE_ENFORCE_EQ(ctx.InputSize(), 2);
+    PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1);
     PADDLE_ENFORCE(ctx.InputVar(0) != nullptr && ctx.InputVar(1) != nullptr,
                    "Inputs of AddOp must all be set");
     PADDLE_ENFORCE(ctx.OutputVar(0) != nullptr,

paddle/operators/cross_entropy_op.cu

@@ -14,6 +14,3 @@
 
 #define EIGEN_USE_GPU
 #include "paddle/operators/cross_entropy_op.h"
-
-REGISTER_OP_GPU_KERNEL(onehot_cross_entropy,
-                       ops::OnehotCrossEntropyOpKernel<ops::GPUPlace, float>);

paddle/operators/cross_entropy_op.h

@@ -18,7 +18,24 @@ limitations under the License. */
 namespace paddle {
 namespace operators {
 
-static const float kCrossEntropyLogThreshold{1e-20};
+template <typename T>
+T tolerable_value(T x) {
+  static_assert(std::is_floating_point<T>::value,
+                "tolerable_value works only on float, "
+                "double and double double.");
+
+  const T kApproInf = 1e20;
+
+  if (x == INFINITY) {
+    return kApproInf;
+  }
+
+  if (x == -INFINITY) {
+    return -kApproInf;
+  }
+
+  return x;
+}
 
 template <typename Place, typename T>
 class OnehotCrossEntropyOpKernel : public OpKernel {
@@ -36,10 +53,9 @@ class OnehotCrossEntropyOpKernel : public OpKernel {
     int batch_size = X->dims()[0];
     int class_num = X->dims()[1];
 
-    // Y[i] = -log(X[i][j])
     for (int i = 0; i < batch_size; ++i) {
-      Ydata[i] = -std::log(std::max(Xdata[i * class_num + label_data[i]],
-                                    kCrossEntropyLogThreshold));
+      int index = i * class_num + label_data[i];
+      Ydata[i] = -tolerable_value(std::log(Xdata[index]));
     }
   }
 };
@@ -62,9 +78,8 @@ class OnehotCrossEntropyGradientOpKernel : public OpKernel {
     const int class_num = X->dims()[1];
 
     for (int i = 0; i < batch_size; ++i) {
-      dXdata[i * class_num + label_data[i]] =
-          -dYdata[i] / std::max(Xdata[i * class_num + label_data[i]],
-                                kCrossEntropyLogThreshold);
+      int index = i * class_num + label_data[i];
+      dXdata[index] = -tolerable_value(dYdata[i] / Xdata[index]);
     }
   }
 };

paddle/operators/mul_op.cc

@@ -23,12 +23,16 @@ class MulOp : public OperatorWithKernel {
     PADDLE_ENFORCE(ctx.InputSize() == 2, "The mul op must take two inputs");
     auto dim0 = ctx.Input<Tensor>(0)->dims();
     auto dim1 = ctx.Input<Tensor>(1)->dims();
-    PADDLE_ENFORCE(dim0.size() == 2 && dim1.size() == 2,
-                   "The input of mul op must be matrix");
-    PADDLE_ENFORCE(
-        dim0[1] == dim1[0],
+    PADDLE_ENFORCE_EQ(dim0.size(), 2,
+                      "input X(%s) should be a tensor with 2 dims, a matrix",
+                      ctx.op_.Input("X"));
+    PADDLE_ENFORCE_EQ(dim1.size(), 2,
+                      "input Y(%s) should be a tensor with 2 dims, a matrix",
+                      ctx.op_.Input("Y"));
+    PADDLE_ENFORCE_EQ(
+        dim0[1], dim1[0],
         "First matrix's width must be equal with second matrix's height.");
-    PADDLE_ENFORCE(ctx.OutputSize() == 1, "The mul op must take one output");
+    PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1, "The mul op takes only one output");
     ctx.Output<Tensor>(0)->Resize({dim0[0], dim1[1]});
   }
 };

paddle/operators/recurrent_op.cc

@@ -36,6 +36,7 @@ void RecurrentAlgorithm::InferShape(const Scope& scope) const {
   InitMemories(step_scopes[0], true /*infer_shape_mode*/);
   Variable* net = scope.FindVar(arg_->step_net);
   PADDLE_ENFORCE(net != nullptr, "failed to get step net");
+
   for (size_t i = 0; i < seq_len_; i++) {
     if (i > 0) {
       rnn::LinkMemories(step_scopes, arg_->memories, i, -1,
@@ -56,6 +57,7 @@ void RecurrentAlgorithm::Run(const Scope& scope,
   Variable* net = scope.FindVar(arg_->step_net);
 
   for (size_t step_id = 0; step_id < seq_len_; step_id++) {
+    // create output alias variables
     if (step_id > 0) {
       rnn::LinkMemories(step_scopes, arg_->memories, step_id, -1,
                         false /*infer_shape_mode*/);
@@ -67,22 +69,31 @@ void RecurrentAlgorithm::Run(const Scope& scope,
 }
 
 void RecurrentAlgorithm::CreateScopes(const Scope& scope) const {
-  // TODO(xxx) Only two scopes are needed for inference, this case will be
+  // TODO(superjom) Only two scopes are needed for inference, this case will be
   // supported later.
-  auto step_scopes =
-      scope.FindVar(arg_->step_scopes)->GetMutable<std::vector<Scope*>>();
+  auto step_scopes_var = scope.FindVar(arg_->step_scopes);
+  PADDLE_ENFORCE(step_scopes_var != nullptr, "");
+  auto step_scopes = step_scopes_var->GetMutable<std::vector<Scope*>>();
+
+  // Now all variables in scope must be created outside of op.
+  auto net_var = scope.FindVar(arg_->step_net);
+  PADDLE_ENFORCE(net_var != nullptr, "no stepnet called %s in scope",
+                 arg_->step_net);
+  auto net_op = net_var->GetMutable<NetOp>();
+  PADDLE_ENFORCE(!net_op->outputs_.empty(), "net_op has no outputs");
 
   if (seq_len_ > step_scopes->size()) {
     for (size_t i = step_scopes->size(); i < seq_len_; ++i) {
       auto& step_scope = scope.NewScope();
 
-      // Now all variables in scope must be created outside of op.
-      auto net_op = scope.FindVar(arg_->step_net)->GetMutable<NetOp>();
+      // create step net's temp inputs
       for (auto& input : net_op->inputs_) {
         // the weight are located in parent scope
-        if (!step_scope.FindVar(input)) step_scope.NewVar(input);
+        if (!step_scope.FindVar(input))
+          step_scope.NewVar(input)->GetMutable<Tensor>();
       }
-      for (auto& output : net_op->outputs_) {
+      // create stepnet's outputs
+      for (const auto& output : net_op->outputs_) {
         step_scope.NewVar(output);
       }
       step_scopes->emplace_back(&step_scope);
@@ -100,6 +111,7 @@ void RecurrentAlgorithm::InitMemories(Scope* step_scope,
     Tensor* boot_mem = step_scope->FindVar(attr.boot_var)->GetMutable<Tensor>();
     if (infer_shape_mode) {
       pre_mem->Resize(boot_mem->dims());
+      PADDLE_ENFORCE_EQ(pre_mem->dims().size(), 2);
     } else {
       pre_mem->ShareDataWith<float>(*boot_mem);
     }

paddle/operators/rnn/recurrent_op_utils.cc

@@ -53,11 +53,13 @@ void ConcatOutputs(const std::vector<Scope*>& step_scopes,
     PADDLE_ENFORCE(output_var != nullptr, "output link [%s] is not in scope.",
                    outlinks[i].external);
     Tensor* output = output_var->GetMutable<Tensor>();
+
     if (infer_shape_mode) {
-      fmw::DDim step_dims = step_scopes[0]
-                                ->FindVar(outlinks[i].internal)
-                                ->GetMutable<Tensor>()
-                                ->dims();
+      auto step_scope_var = step_scopes[0]->FindVar(outlinks[i].internal);
+      PADDLE_ENFORCE(step_scope_var != nullptr, "%s not in scope",
+                     outlinks[i].internal);
+      fmw::DDim step_dims =
+          step_scope_var->template GetMutable<Tensor>()->dims();
       std::vector<int> dims_vec = vectorize(step_dims);
       dims_vec.insert(dims_vec.begin(), seq_len);
       output->Resize(fmw::make_ddim(dims_vec));
@@ -79,14 +81,15 @@ void LinkMemories(const std::vector<Scope*>& scopes,
                   const std::vector<rnn::MemoryAttr>& memories,
                   const size_t step_id, const int offset,
                   bool infer_shape_mode) {
-  PADDLE_ENFORCE(step_id < scopes.size(),
-                 "step [%d] is out of range of step scopes' size [%d]", step_id,
-                 scopes.size());
-  PADDLE_ENFORCE(static_cast<int>(step_id) + offset >= 0,
-                 "offset [%d] must be large than -[%d]", offset, step_id);
-  PADDLE_ENFORCE(step_id + offset < scopes.size(),
-                 "offset [%d] is out of range, it must be less than (%d - %d)",
-                 offset, scopes.size(), step_id);
+  PADDLE_ENFORCE_LT(step_id, scopes.size(),
+                    "step [%d] is out of range of step scopes' size [%d]",
+                    step_id, scopes.size());
+  PADDLE_ENFORCE_GE(static_cast<int>(step_id) + offset, 0,
+                    "offset [%d] must be large than -[%d]", offset, step_id);
+  PADDLE_ENFORCE_LT(
+      step_id + offset, scopes.size(),
+      "offset [%d] is out of range, it must be less than (%d - %d)", offset,
+      scopes.size(), step_id);
   auto scope = scopes[step_id];
   auto linked_scope = scopes[step_id + offset];
   for (auto& attr : memories) {

paddle/operators/sigmoid_op.cc

@@ -37,10 +37,8 @@ class SigmoidOpMaker : public OpProtoAndCheckerMaker {
 
 class SigmoidOpGrad : public OperatorWithKernel {
  protected:
-  void InferShape(const InferShapeContext &ctx) const override {}
-  std::string DebugString() const override {
-    LOG(INFO) << "SigmoidGrad";
-    return "";
+  void InferShape(const InferShapeContext &ctx) const override {
+    ctx.Output<Tensor>(0)->Resize(ctx.Input<Tensor>(0)->dims());
   }
 };
 
@@ -51,3 +49,5 @@ REGISTER_OP(sigmoid, ops::SigmoidOp, ops::SigmoidOpMaker);
 REGISTER_GRADIENT_OP(sigmoid, sigmoid_grad, ops::SigmoidOpGrad);
 
 REGISTER_OP_CPU_KERNEL(sigmoid, ops::SigmoidKernel<ops::CPUPlace, float>);
+REGISTER_OP_CPU_KERNEL(sigmoid_grad,
+                       ops::SigmoidGradKernel<ops::CPUPlace, float>);

paddle/operators/sigmoid_op.cu

@@ -16,3 +16,5 @@
 #include "paddle/operators/sigmoid_op.h"
 
 REGISTER_OP_GPU_KERNEL(sigmoid, ops::SigmoidKernel<ops::GPUPlace, float>);
+REGISTER_OP_GPU_KERNEL(sigmoid_grad,
+                       ops::SigmoidGradKernel<ops::GPUPlace, float>);

paddle/operators/sigmoid_op.h

@@ -27,6 +27,7 @@ class SigmoidKernel : public OpKernel {
     auto output = context.Output<Tensor>(0);
     output->mutable_data<T>(context.GetPlace());
 
+    // The clipping is used in Paddle's raw implenmention
     auto X = EigenVector<T>::Flatten(*input);
     auto Y = EigenVector<T>::Flatten(*output);
     auto place = context.GetEigenDevice<Place>();
@@ -34,5 +35,23 @@ class SigmoidKernel : public OpKernel {
     Y.device(place) = 1.0 / (1.0 + (-1.0 * X).exp());
   }
 };
+
+template <typename Place, typename T>
+class SigmoidGradKernel : public OpKernel {
+ public:
+  void Compute(const ExecutionContext& context) const override {
+    auto Y_t = context.Input<Tensor>("Y");
+    auto dY_t = context.Input<Tensor>(framework::GradVarName("Y"));
+    auto dX_t = context.Output<Tensor>(framework::GradVarName("X"));
+
+    dX_t->mutable_data<T>(context.GetPlace());
+
+    auto dX = EigenVector<T>::Flatten(*dX_t);
+    auto Y = EigenVector<T>::Flatten(*Y_t);
+    auto dY = EigenVector<T>::Flatten(*dY_t);
+    dX.device(context.GetEigenDevice<Place>()) = dY * Y * (1. - Y);
+  }
+};
+
 }  // namespace operators
 }  // namespace paddle

paddle/scripts/CMakeLists.txt

 configure_file(submit_local.sh.in
-    submit_local.sh
+    paddle
     @ONLY)
 
-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/submit_local.sh DESTINATION bin
+install(FILES ${CMAKE_CURRENT_BINARY_DIR}/paddle DESTINATION bin
         PERMISSIONS OWNER_EXECUTE OWNER_WRITE OWNER_READ
-            GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ
-        RENAME paddle)
+            GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ)
 
 configure_file(tools/usage_stat/usage.sh
-    usage.sh
+    paddle_usage
     @ONLY)
 
-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/usage.sh DESTINATION opt/paddle/bin
+install(FILES ${CMAKE_CURRENT_BINARY_DIR}/paddle_usage DESTINATION opt/paddle/bin
         PERMISSIONS OWNER_EXECUTE OWNER_WRITE OWNER_READ
-            GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ
-        RENAME paddle_usage)
+            GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ)

paddle/scripts/docker/build_android.sh

@@ -20,4 +20,4 @@ cmake -DCMAKE_SYSTEM_NAME=Android \
       -DWITH_SWIG_PY=OFF \
       ..
 make -j `nproc`
-make install
+make install -j `nproc`

paddle/setup.py.in

-# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-
-from setuptools import setup, Extension
-
-setup(name="py_paddle",
-      version="${PADDLE_VERSION}",
-      packages=['py_paddle'],
-      include_package_data=True,
-      package_data={'py_paddle':['*.py','_swig_paddle.so']},
-      install_requires = [
-        'nltk>=3.2.2',
-        # We use `numpy.flip` in `test_image.py`.
-        # `numpy.flip` is introduced in `1.12.0`
-        'numpy>=1.12.0',      # The numpy is required.
-        'protobuf==${PROTOBUF_VERSION}'    # The paddle protobuf version
-      ],
-      url='http://www.paddlepaddle.org/',
-      license='Apache 2.0',
-)

paddle/trainer/tests/simple_sparse_neural_network.py

 from paddle.trainer_config_helpers import *
 
-settings(batch_size=128, learning_method=AdaGradOptimizer(), learning_rate=1e-4)
+settings(batch_size=17, learning_method=AdaGradOptimizer(), learning_rate=1e-4)
 
 file_list = 'trainer/tests/fake_file_list.list'
 
@@ -12,7 +12,7 @@ define_py_data_sources2(
 
 embedding = embedding_layer(
     input=data_layer(
-        name="word_ids", size=65536),
+        name="word_ids", size=8191),
     size=128,
     param_attr=ParamAttr(sparse_update=True))
 prediction = fc_layer(input=embedding, size=10, act=SoftmaxActivation())

paddle/trainer/tests/simple_sparse_neural_network_dp.py

@@ -7,15 +7,15 @@ def init_hook(settings, is_train, **kwargs):
 
 
 @provider(
-    input_types={'word_ids': integer_value(65536),
+    input_types={'word_ids': integer_value(8191),
                  'label': integer_value(10)},
     min_pool_size=0,
     init_hook=init_hook)
 def process(settings, filename):
     if settings.is_train:
-        data_size = 2**20
-    else:
         data_size = 2**10
+    else:
+        data_size = 2**5
 
     for _ in xrange(data_size):
-        yield random.randint(0, 65535), random.randint(0, 9)
+        yield random.randint(0, 8190), random.randint(0, 9)

paddle/trainer/tests/test_TrainerOnePass.cpp

@@ -100,25 +100,25 @@ TEST(average_window, gpu) {
 }
 
 TEST(average_window, gpu2) {
-  FLAGS_num_passes = 100;
+  FLAGS_num_passes = 20;
   trainerOnePassTest(configFile1, true, false, 2, 0.01);
   FLAGS_num_passes = 1;
 }
 
 TEST(average_window, gpu4) {
-  FLAGS_num_passes = 100;
+  FLAGS_num_passes = 20;
   trainerOnePassTest(configFile1, true, false, 4, 0.01);
   FLAGS_num_passes = 1;
 }
 
 TEST(average_window_cpu, gpu2) {
-  FLAGS_num_passes = 100;
+  FLAGS_num_passes = 20;
   trainerOnePassTest(configFile1, true, false, 2, 0.01, true);
   FLAGS_num_passes = 1;
 }
 
 TEST(average_window_cpu, gpu4) {
-  FLAGS_num_passes = 100;
+  FLAGS_num_passes = 20;
   trainerOnePassTest(configFile1, true, false, 4, 0.01, true);
   FLAGS_num_passes = 1;
 }

python/CMakeLists.txt

@@ -39,7 +39,7 @@ add_custom_command(OUTPUT ${OUTPUT_DIR}/.timestamp
     DEPENDS gen_proto_py copy_paddle_pybind framework_py_proto ${PY_FILES} ${external_project_dependencies} ${COPY_PADDLE_MASTER})
 
 add_custom_target(paddle_python ALL DEPENDS
-    ${OUTPUT_DIR}/.timestamp)
+    ${OUTPUT_DIR}/.timestamp paddle_pserver_main paddle_trainer paddle_merge_model python_api_wheel)
 
 set(PADDLE_PYTHON_PACKAGE_DIR ${CMAKE_CURRENT_BINARY_DIR}/dist/)
 

python/paddle/v2/framework/tests/op_test_util.py

@@ -24,7 +24,7 @@ class OpTestMeta(type):
             scope = core.Scope()
             kwargs = dict()
             places = [core.CPUPlace()]
-            if core.is_compile_gpu():
+            if core.is_compile_gpu() and core.Operator.support_gpu(self.type):
                 places.append(core.GPUPlace(0))
 
             for place in places:
@@ -62,7 +62,9 @@ class OpTestMeta(type):
                 for out_name in Operator.get_op_output_names(self.type):
                     actual = numpy.array(scope.find_var(out_name).get_tensor())
                     expect = self.outputs[out_name]
-                    numpy.isclose(actual, expect)
+                    self.assertTrue(
+                        numpy.allclose(actual, expect),
+                        "output name: " + out_name + "has diff")
 
         obj.test_all = test_all
         return obj

python/paddle/v2/framework/tests/test_recurrent_op.py

+import logging
 import paddle.v2.framework.core as core
 import unittest
 import numpy as np
@@ -7,10 +8,9 @@ ops = creation.op_creations
 
 
 def create_tensor(scope, name, shape):
-    tensor = scope.create_var(name).get_tensor()
+    tensor = scope.new_var(name).get_tensor()
     tensor.set_dims(shape)
-    tensor.alloc_float()
-    tensor.set(np.random.random(shape))
+    tensor.set(np.random.random(shape), core.CPUPlace())
     return tensor
 
 
@@ -31,40 +31,36 @@ class TestRNN(unittest.TestCase):
         - h
     '''
 
+    input_dim = 30
+    batch_size = 50
+    weight_dim = 15
+    sent_len = 11
+
     def init(self):
-        input_dim = 30
-        batch_size = 50
-        weight_dim = 15
-
-        self.scope = core.Scope(None)
-
-        # create vars
-        create_tensor(self.scope, "x", [batch_size, input_dim])
-        create_tensor(self.scope, "W", [input_dim, weight_dim])
-        create_tensor(self.scope, "U", [weight_dim, weight_dim])
-        create_tensor(self.scope, "h_boot", [batch_size, weight_dim])
-
-        x_alias = "x@alias"
-        y_alias = "y@alias"
-        memory = "h@alias"
-        prememory = "h@pre"
-        output = "rnn_out"
-        output_alias = "rnn_out@alias"
-
-        # create step net
-        stepnet_var = self.scope.create_var("stepnet")
-        stepnet = stepnet_var.get_net()
-        # stepnet = core.Net.create()
-        x_fc_op = ops.fc(X=x_alias, W="W", Y="Wx")
-        h_fc_op = ops.fc(X=prememory, W="U", Y="Uh")
-        sum_op = ops.add_two(X="Wx", Y="Uh", Out="sum")
-        sig_op = ops.sigmoid(X="sum", Y=memory)
-        stepnet.add_op(x_fc_op)
-        stepnet.add_op(h_fc_op)
-        stepnet.add_op(sum_op)
-        stepnet.add_op(sig_op)
-        stepnet.complete_add_op(True)
 
+        self.scope = core.Scope()
+
+        self.create_global_variables()
+        self.create_step_net()
+        rnn_op = self.create_rnn_op()
+        ctx = core.DeviceContext.create(core.CPUPlace())
+        print 'infer_shape'
+        rnn_op.infer_shape(self.scope)
+
+        rnn_op.run(self.scope, ctx)
+
+    def create_global_variables(self):
+        # create inlink
+        create_tensor(self.scope, "x",
+                      [self.sent_len, self.batch_size, self.input_dim])
+        create_tensor(self.scope, "W", [self.input_dim, self.input_dim])
+        create_tensor(self.scope, "U", [self.input_dim, self.input_dim])
+        create_tensor(self.scope, "h_boot", [self.batch_size, self.input_dim])
+        self.scope.new_var("step_scopes")
+        self.scope.new_var("h@alias")
+        self.scope.new_var("h")
+
+    def create_rnn_op(self):
         # create RNNOp
         rnnop = ops.recurrent_op(
             # inputs
@@ -72,17 +68,27 @@ class TestRNN(unittest.TestCase):
             boot_memories=["h_boot"],
             step_net="stepnet",
             # outputs
-            outlinks=[output],
+            outlinks=["h"],
             step_scopes="step_scopes",
             # attributes
             inlink_alias=["x@alias"],
-            outlink_alias=[output_alias],
-            pre_memories=[prememory],
-            memories=[memory])
+            outlink_alias=["h@alias"],
+            pre_memories=["h@pre"],
+            memories=["h@alias"])
+        return rnnop
+
+    def create_step_net(self):
+        var = self.scope.new_var("stepnet")
+        stepnet = var.get_net()
 
-        ctx = core.DeviceContext.cpu_context()
-        rnnop.infer_shape(self.scope)
-        rnnop.run(self.scope, ctx)
+        x_fc_op = ops.fc(X="x@alias", W="W", Y="Wx")
+        h_fc_op = ops.fc(X="h@pre", W="U", Y="Uh")
+        sum_op = ops.add_two(X="Wx", Y="Uh", Out="sum")
+        sig_op = ops.sigmoid(X="sum", Y="h@alias")
+
+        for op in [x_fc_op, h_fc_op, sum_op, sig_op]:
+            stepnet.add_op(op)
+        stepnet.complete_add_op(True)
 
     def test_recurrent(self):
         self.init()

python/paddle/v2/framework/tests/test_sigmoid_op.py

@@ -12,5 +12,8 @@ class TestSigmoidOp(unittest.TestCase):
         self.outputs = {'Y': 1 / (1 + np.exp(-self.inputs['X']))}
 
 
+#class TestSigmoidGradOp(unittest.TestCase):
+#TODO(qingqing) add unit test
+
 if __name__ == '__main__':
     unittest.main()

python/setup.py.in

-from setuptools import setup
+from setuptools import setup, Distribution
+
+class BinaryDistribution(Distribution):
+    def has_ext_modules(foo):
+        return True
 
 packages=['paddle',
           'paddle.proto',
@@ -11,7 +15,8 @@ packages=['paddle',
           'paddle.v2.master',
           'paddle.v2.plot',
           'paddle.v2.framework',
-          'paddle.v2.framework.proto']
+          'paddle.v2.framework.proto',
+          'py_paddle']
 
 setup_requires=["requests",
                 "numpy>=1.12",
@@ -21,23 +26,33 @@ setup_requires=["requests",
                 "rarfile",
                 "scipy>=0.19.0",
                 "Pillow",
-                "nltk"]
+                "nltk>=3.2.2"]
 
 if '${CMAKE_SYSTEM_PROCESSOR}' not in ['arm', 'armv7-a', 'aarch64']:
     setup_requires+=["opencv-python"]
 
-setup(name='paddle',
+setup(name='paddlepaddle',
       version='${PADDLE_VERSION}',
       description='Parallel Distributed Deep Learning',
       install_requires=setup_requires,
       packages=packages,
-      package_data={'paddle.v2.master': ['libpaddle_master.so'],
-            'paddle.v2.framework': ['core.so']
+      package_data={
+        'paddle.v2.master': ['libpaddle_master.so'],
+        'paddle.v2.framework': ['core.so'],
+        'py_paddle':['*.py','_swig_paddle.so']
       },
       package_dir={
           '': '${CMAKE_CURRENT_SOURCE_DIR}',
           # The paddle.v2.framework.proto will be generated while compiling.
           # So that package points to other directory.
-          'paddle.v2.framework.proto': '${PROJ_BINARY_ROOT}/paddle/framework'
+          'paddle.v2.framework.proto': '${PROJ_BINARY_ROOT}/paddle/framework',
+          'py_paddle': '${PROJ_ROOT}/paddle/py_paddle'
       },
+      scripts=['${PROJ_BINARY_ROOT}/paddle/scripts/paddle'],
+      distclass=BinaryDistribution,
+      data_files=[('/usr/local/opt/paddle/bin',
+                       ['${PROJ_BINARY_ROOT}/paddle/scripts/paddle_usage',
+                        '${PROJ_BINARY_ROOT}/paddle/trainer/paddle_trainer',
+                        '${PROJ_BINARY_ROOT}/paddle/trainer/paddle_merge_model',
+                        '${PROJ_BINARY_ROOT}/paddle/pserver/paddle_pserver_main'])]
 )