Fix swig on linux and clean cmake

CMakeLists.txt

@@ -72,14 +72,21 @@ include_directories("${PROJ_ROOT}/paddle/cuda/include")
 include_directories("${CMAKE_CURRENT_BINARY_DIR}/proto")
 
 set(EXTERNAL_LIBS
-    # have not include gtest here.
     ${GFLAGS_LIBRARIES}
     ${GLOG_LIBRARIES}
     ${CBLAS_LIBRARIES}
     ${PROTOBUF_LIBRARY}
     ${ZLIB_LIBRARIES}
+    ${PYTHON_LIBRARIES}
 )
 
+if(WITH_GPU)
+    list(APPEND EXTERNAL_LIB ${CUDA_LIBRARIES} ${CUDA_rt_LIBRARY})
+    if(NOT WITH_DSO)
+        list(APPEND EXTERNAL_LIB ${CUDNN_LIBRARY} ${CUDA_CUBLAS_LIBRARIES} ${CUDA_curand_LIBRARY})
+    endif(NOT WITH_DSO)
+endif(WITH_GPU)
+
 add_subdirectory(proto)
 add_subdirectory(paddle)
 add_subdirectory(python)

cmake/external/python.cmake

@@ -216,7 +216,3 @@ ENDIF(PYTHONLIBS_FOUND AND PYTHONINTERP_FOUND)
 
 INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_DIR})
 INCLUDE_DIRECTORIES(${PYTHON_NUMPY_INCLUDE_DIR})
-
-MESSAGE("[Paddle] Python Executable: ${PYTHON_EXECUTABLE}")
-MESSAGE("[Paddle] Python Include: ${PYTHON_INCLUDE_DIRS}")
-MESSAGE("[Paddle] Python Libraries: ${PYTHON_LIBRARIES}")

cmake/util.cmake

@@ -95,32 +95,12 @@ function(link_paddle_exe TARGET_NAME)
         paddle_parameter
         paddle_proto
         paddle_cuda
-        ${METRIC_LIBS}
         ${EXTERNAL_LIBS}
         ${CMAKE_THREAD_LIBS_INIT}
         ${CMAKE_DL_LIBS}
         ${RDMA_LD_FLAGS}
         ${RDMA_LIBS})
 
-    if(WITH_PYTHON)
-        target_link_libraries(${TARGET_NAME}
-            ${PYTHON_LIBRARIES} util)
-    endif()
-
-    if(WITH_GPU)
-        if(NOT WITH_DSO OR WITH_METRIC)
-            target_link_libraries(${TARGET_NAME}
-                ${CUDNN_LIBRARY}
-                ${CUDA_curand_LIBRARY})
-            CUDA_ADD_CUBLAS_TO_TARGET(${TARGET_NAME})
-        endif()
-
-        check_library_exists(rt clock_gettime "time.h" HAVE_CLOCK_GETTIME )
-        if(HAVE_CLOCK_GETTIME)
-            target_link_libraries(${TARGET_NAME} rt)
-        endif()
-    endif()
-
     add_dependencies(${TARGET_NAME} ${external_project_dependencies})
 endfunction()
 

paddle/api/CMakeLists.txt

@@ -45,6 +45,9 @@ SET(SWIG_MODULE_swig_paddle_EXTRA_DEPS
 
 IF(APPLE)
     SET(CMAKE_LINK_FLAGS "-undefined dynamic_lookup -Wl,-all_load")
+ELSE(APPLE)
+    SET(ARCHIVE_START "-Wl,--whole-archive")
+    SET(ARCHIVE_END "-Wl,--no-whole-archive")
 ENDIF(APPLE)
 
 SWIG_ADD_MODULE(swig_paddle python Paddle.i)
@@ -52,21 +55,23 @@ SWIG_LINK_LIBRARIES(swig_paddle
     ${CMAKE_LINK_FLAGS}
     ${CMAKE_DL_LIBS}
     ${EXTERNAL_LIBS}
-    ${PYTHON_LIBRARIES}
     ${CMAKE_THREAD_LIBS_INIT}
     ${RDMA_LD_FLAGS}
     ${RDMA_LIBS}
     paddle_parameter
-    paddle_function
     paddle_math
     paddle_utils
-    paddle_gserver
     paddle_pserver
     paddle_api
     paddle_cuda
     paddle_trainer_lib
     paddle_network
     paddle_proto
+    ARCHIVE_START
+    paddle_gserver
+    paddle_function
+    ${METRIC_LIBS}
+    ARCHIVE_END
 )
 
 add_custom_command(OUTPUT ${PROJ_ROOT}/paddle/dist/.timestamp

paddle/api/test/run_tests.sh

@@ -20,7 +20,11 @@ popd > /dev/null
 
 cd $SCRIPTPATH
 
-$1 -m pip install ../../dist/*.whl
+rm -rf .test_env
+virtualenv .test_env
+source .test_env/bin/activate
+
+python -m pip install ../../dist/*.whl
 
 test_list="testArguments.py testGradientMachine.py testMatrix.py  testVector.py testTrain.py testTrainer.py"
 
@@ -29,7 +33,7 @@ export PYTHONPATH=$PWD/../../../python/
 for fn in $test_list
 do
   echo "test $fn"
-  $1 $fn
+  python $fn
   if [ $? -ne 0 ]; then
     exit 1
   fi

paddle/setup.py.in

@@ -16,12 +16,12 @@
 from setuptools import setup, Extension
 
 setup(name="py_paddle",
-  version="@PADDLE_VERSION@",
-  packages=['py_paddle'],
-  include_package_data=True,
-  package_data={'py_paddle':['*.py','_swig_paddle.so']},
-  install_requires = [
-    'numpy>=1.8.0',      # The numpy is required.
-    'protobuf>=2.4.1'    # The paddle protobuf version
-  ],
+      version="@PADDLE_VERSION@",
+      packages=['py_paddle'],
+      include_package_data=True,
+      package_data={'py_paddle':['*.py','_swig_paddle.so']},
+      install_requires = [
+        'numpy>=1.8.0',      # The numpy is required.
+        'protobuf>=2.4.1'    # The paddle protobuf version
+      ],
 )