提交 92b2b1bd 编写于 作者: C caoying03

Merge branch 'develop' into kmax_score_layer

......@@ -38,17 +38,16 @@ RUN apt-get update && \
RUN pip --no-cache-dir install 'numpy>=1.12.0'
# Install Go and glide
RUN wget -O go.tgz https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz && \
tar -C /usr/local -xzf go.tgz && \
RUN wget -qO- https://storage.googleapis.com/golang/go1.8.1.linux-amd64.tar.gz | \
tar -xz -C /usr/local && \
mkdir /root/gopath && \
mkdir /root/gopath/bin && \
mkdir /root/gopath/src && \
rm go.tgz
mkdir /root/gopath/src
ENV GOROOT=/usr/local/go GOPATH=/root/gopath
# should not be in the same line with GOROOT definition, otherwise docker build could not find GOROOT.
ENV PATH=${PATH}:${GOROOT}/bin:${GOPATH}/bin
# install glide
RUN curl -q https://glide.sh/get | sh
RUN curl -s -q https://glide.sh/get | sh
# git credential to skip password typing
RUN git config --global credential.helper store
......
......@@ -8,7 +8,7 @@ ExternalProject_Add(
extern_lib_any
${EXTERNAL_PROJECT_LOG_ARGS}
GIT_REPOSITORY "https://github.com/PaddlePaddle/any.git"
GIT_TAG "8fef1e93710a0edf8d7658999e284a1142c4c020"
GIT_TAG "15595d8324be9e8a9a80d9ae442fdd12bd66df5d"
PREFIX ${ANY_SOURCE_DIR}
UPDATE_COMMAND ""
CONFIGURE_COMMAND ""
......
......@@ -43,8 +43,8 @@ SET(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_RPATH}" "${MKLML_ROOT}/lib")
INCLUDE_DIRECTORIES(${MKLML_INC_DIR})
SET(mklml_cmakefile ${MKLML_DOWNLOAD_DIR}/CMakeLists.txt)
FILE(WRITE ${mklml_cmakefile} "PROJECT(MKLML)\n"
FILE(WRITE ${MKLML_DOWNLOAD_DIR}/CMakeLists.txt
"PROJECT(MKLML)\n"
"cmake_minimum_required(VERSION 3.0)\n"
"install(DIRECTORY ${MKLML_VER}\n"
" DESTINATION ${MKLML_DST_DIR})\n")
......@@ -54,8 +54,7 @@ ExternalProject_Add(
${EXTERNAL_PROJECT_LOG_ARGS}
PREFIX ${MKLML_SOURCE_DIR}
DOWNLOAD_DIR ${MKLML_DOWNLOAD_DIR}
DOWNLOAD_COMMAND wget --no-check-certificate -O ${MKLML_DOWNLOAD_DIR}/${MKLML_VER}.tgz ${MKLML_URL}
&& tar -xzf ${MKLML_DOWNLOAD_DIR}/${MKLML_VER}.tgz
DOWNLOAD_COMMAND wget --no-check-certificate -qO- ${MKLML_URL} | tar xz -C ${MKLML_DOWNLOAD_DIR}
DOWNLOAD_NO_PROGRESS 1
UPDATE_COMMAND ""
CMAKE_ARGS -DCMAKE_INSTALL_PREFIX=${MKLML_INSTALL_ROOT}
......
......@@ -262,6 +262,11 @@ kmax_sequence_score
.. autoclass:: paddle.v2.layer.kmax_sequence_score
:noindex:
sub_nested_seq
--------------
.. autoclass:: paddle.v2.layer.sub_nested_seq
:noindex:
Reshaping Layers
================
......
......@@ -11,6 +11,15 @@ Paddle每次发新的版本,遵循以下流程:
* 编译这个版本的Ubuntu Deb包。如果失败,修复Ubuntu Deb包编译问题,Patch号加一,返回第二步。
* 使用Regression Test List作为检查列表,测试Docker镜像/ubuntu安装包的功能正确性
* 如果失败,记录下所有失败的例子,在这个`release/版本号`分支中,修复所有bug后,Patch号加一,返回第二步
* 编译这个版本的python wheel包,并发布到pypi。
* 由于pypi.python.org目前遵循[严格的命名规范PEP 513](https://www.python.org/dev/peps/pep-0513),在使用twine上传之前,需要重命名wheel包中platform相关的后缀,比如将`linux_x86_64`修改成`manylinux1_x86_64`
* pypi上的package名称为paddlepaddle和paddlepaddle_gpu,如果要上传GPU版本的包,需要修改build/python/setup.py中,name: "paddlepaddle_gpu"并重新打包wheel包:`python setup.py bdist_wheel`
* 上传方法:
```
cd build/python
pip install twine
twine upload dist/[package to upload]
```
4. 第三步完成后,将`release/版本号`分支合入master分支,并删除`release/版本号`分支。将master分支的合入commit打上tag,tag为`版本号`。同时再将`master`分支合入`develop`分支。最后删除`release/版本号`分支。
5. 编译master分支的Docker发行镜像,发布到dockerhub。编译ubuntu的deb包,发布到github release页面
6. 协同完成Release Note的书写
......
......@@ -3,6 +3,43 @@ PaddlePaddle的Docker容器使用方式
PaddlePaddle目前唯一官方支持的运行的方式是Docker容器。因为Docker能在所有主要操作系统(包括Linux,Mac OS X和Windows)上运行。 请注意,您需要更改 `Dockers设置 <https://github.com/PaddlePaddle/Paddle/issues/627>`_ 才能充分利用Mac OS X和Windows上的硬件资源。
Docker使用入门
------------------------------
几个基础的概念帮助理解和使用Docker:
- *镜像*:一个Docker镜像是一个打包好的软件。它包含了这个软件本身和它所依赖的运行环境。PaddlePaddle的Docker镜像就包含了PaddlePaddle的Python库以及其依赖的多个Python库。这样我们可以直接在Docker中运行需要的程序而不需要安装后在执行。可以执行:
.. code-block:: bash
docker images
来列出当前系统中的所有镜像,同样可以执行:
.. code-block:: bash
docker pull paddlepaddle/paddle:0.10.0
来下载Docker镜像,paddlepaddle/paddle是从官方镜像源Dockerhub.com下载的,推荐国内用户使用ocker.paddlepaddle.org/paddle下载。
- *容器*: 如果说一个Docker镜像就是一个程序,那容器就是这个程序运行时产生的“进程”。
实际上,一个容器就是一个操作系统的进程,但是是运行在独立的进程空间,文件系统以及网络之上。
可以执行:
.. code-block:: bash
docker run paddlepaddle/paddle:0.10.0
来使用一个镜像启动一个容器。
- 默认情况下,Docker容器会运行在独立的文件系统空间之上,我们无法在Docker容器中
访问到主机上的文件。可以通过*挂载Volume*的方式,将主机上的文件或目录挂载到
Docker容器中。下面的命令把当前目录挂载到了容器中的 /data 目录下,容器使用
debian镜像,并且启动后执行 :code:`ls /data`。
.. code-block:: bash
docker run --rm -v $(pwd):/data debian ls /data
PaddlePaddle发布的Docker镜像使用说明
------------------------------
......@@ -12,11 +49,11 @@ PaddlePaddle需要的所有编译工具。把编译出来的PaddlePaddle也打
像,称为生产镜像,里面涵盖了PaddlePaddle运行所需的所有环境。每次
PaddlePaddle发布新版本的时候都会发布对应版本的生产镜像以及开发镜像。运
行镜像包括纯CPU版本和GPU版本以及其对应的非AVX版本。我们会在
`dockerhub.com <https://hub.docker.com/r/paddlepaddle/paddle/tags/>`_ 提供最新
的Docker镜像,可以在"tags"标签下找到最新的Paddle镜像版本。为了方便在国
内的开发者下载Docker镜像,我们提供了国内的镜像服务器供大家使用。如果您
在国内,请把文档里命令中的paddlepaddle/paddle替换成
docker.paddlepaddle.org/paddle。
`dockerhub.com <https://hub.docker.com/r/paddlepaddle/paddle/tags/>`_
和国内镜像`docker.paddlepaddle.org` 提供最新
的Docker镜像,可以在"tags"标签下找到最新的Paddle镜像版本。
**注意:为了方便在国内的开发者下载Docker镜像,我们提供了国内的镜像服务器供大家使用。如果您在国内,请把文档里命令中的paddlepaddle/paddle替换成docker.paddlepaddle.org/paddle。**
1. 开发镜像::code:`paddlepaddle/paddle:0.10.0-dev`
......@@ -68,6 +105,8 @@ docker.paddlepaddle.org/paddle。
如果输出是No,就需要选择使用no-AVX的镜像
**注:在0.10.0之后的版本,PaddlePaddle都可以自动判断硬件是否支持AVX,所以无需判断AVX即可使用**
以上方法在GPU镜像里也能用,只是请不要忘记提前在物理机上安装GPU最新驱动。
为了保证GPU驱动能够在镜像里面正常运行,我们推荐使用[nvidia-docker](https://github.com/NVIDIA/nvidia-docker)来运行镜像。
......
......@@ -63,12 +63,35 @@ CPU-only version and a CUDA GPU version and their no-AVX versions.
We put the docker images on `dockerhub.com
<https://hub.docker.com/r/paddlepaddle/paddle/tags/>`_. You can find the
latest versions under "tags" tab at dockerhub.com. If you are in
China, you can use our Docker image registry mirror to speed up the
download process. To use it, please replace all paddlepaddle/paddle in
the commands to docker.paddlepaddle.org/paddle.
latest versions under "tags" tab at dockerhub.com.
1. Production images, this image might have multiple variants:
** NOTE: If you are in China, you can use our Docker image registry mirror to speed up the download process. To use it, please replace all paddlepaddle/paddle in the commands to docker.paddlepaddle.org/paddle.**
1. development image :code:`paddlepaddle/paddle:<version>-dev`
This image has packed related develop tools and runtime
environment. Users and developers can use this image instead of
their own local computer to accomplish development, build,
releasing, document writing etc. While different version of paddle
may depends on different version of libraries and tools, if you
want to setup a local environment, you must pay attention to the
versions. The development image contains:
- gcc/clang
- nvcc
- Python
- sphinx
- woboq
- sshd
Many developers use servers with GPUs, they can use ssh to login to
the server and run :code:`docker exec` to enter the docker
container and start their work. Also they can start a development
docker image with SSHD service, so they can login to the container
and start work.
2. Production images, this image might have multiple variants:
- GPU/AVX::code:`paddlepaddle/paddle:<version>-gpu`
- GPU/no-AVX::code:`paddlepaddle/paddle:<version>-gpu-noavx`
......@@ -84,7 +107,7 @@ the commands to docker.paddlepaddle.org/paddle.
if cat /proc/cpuinfo | grep -i avx; then echo Yes; else echo No; fi
**NOTE:versions after 0.10.0 will automatically detect system AVX support, so manual detect is not needed in this case.**
To run the CPU-only image as an interactive container:
.. code-block:: bash
......@@ -103,29 +126,6 @@ the commands to docker.paddlepaddle.org/paddle.
nvidia-docker run -it --rm paddlepaddle/paddle:0.10.0-gpu /bin/bash
2. development image :code:`paddlepaddle/paddle:<version>-dev`
This image has packed related develop tools and runtime
environment. Users and developers can use this image instead of
their own local computer to accomplish development, build,
releasing, document writing etc. While different version of paddle
may depends on different version of libraries and tools, if you
want to setup a local environment, you must pay attention to the
versions. The development image contains:
- gcc/clang
- nvcc
- Python
- sphinx
- woboq
- sshd
Many developers use servers with GPUs, they can use ssh to login to
the server and run :code:`docker exec` to enter the docker
container and start their work. Also they can start a development
docker image with SSHD service, so they can login to the container
and start work.
Train Model Using Python API
----------------------------
......
......@@ -32,7 +32,7 @@ import (
func main() {
port := flag.Int("port", 0, "port of the pserver")
index := flag.Int("index", -1, "index of this pserver, should be larger or equal than 0")
index := flag.Int("index", -1, "index of the pserver, set to -1 if use etcd for auto pserver index registry")
etcdEndpoint := flag.String("etcd-endpoint", "http://127.0.0.1:2379",
"comma separated endpoint string for pserver to connect to etcd")
dialTimeout := flag.Duration("dial-timeout", 5*time.Second, "dial timeout")
......@@ -60,12 +60,12 @@ func main() {
idx, err = e.Register(*port)
candy.Must(err)
cp, err = pserver.NewCheckpointFromFile(*checkpointPath, idx, e)
cp, err = pserver.LoadCheckpoint(e, idx)
if err != nil {
if err == pserver.ErrCheckpointNotFound {
log.Infof("Could not find the pserver checkpoint.")
} else {
log.Errorf("Fetch checkpoint failed, %s", err)
panic(err)
}
}
}
......
hash: 2a1c0eca5c07a130e3d224f9821f96cfa37a39bf6bce141c855bbc57ef569f1c
updated: 2017-07-29T07:34:48.722757905+08:00
hash: 1b9b07408ca7fac27a374dc2ccd2433e4bff090484008a037df967284949a582
updated: 2017-08-03T21:46:51.744995189Z
imports:
- name: github.com/beorn7/perks
version: 4c0e84591b9aa9e6dcfdf3e020114cd81f89d5f9
......@@ -145,6 +145,8 @@ imports:
version: a1dba9ce8baed984a2495b658c82687f8157b98f
subpackages:
- xfs
- name: github.com/satori/go.uuid
version: 879c5887cd475cd7864858769793b2ceb0d44feb
- name: github.com/sirupsen/logrus
version: a3f95b5c423586578a4e099b11a46c2479628cac
- name: github.com/topicai/candy
......
......@@ -14,11 +14,13 @@ import:
version: ^1.0.0
- package: github.com/topicai/candy
- package: golang.org/x/crypto
vcs: git
repo: https://github.com/golang/crypto.git
- package: golang.org/x/sys
vcs: git
- package: golang.org/x/sys
repo: https://github.com/golang/sys.git
- package: golang.org/x/text
vcs: git
- package: golang.org/x/text
repo: https://github.com/golang/text.git
vcs: git
- package: github.com/satori/go.uuid
version: v1.1.0
......@@ -77,11 +77,12 @@ type taskEntry struct {
NumFailure int
}
type taskQueues struct {
type masterState struct {
Todo []taskEntry
Pending map[int]taskEntry // map from task ID to task entry
Done []taskEntry
Failed []taskEntry
CurPass int
}
// Service is the master server service.
......@@ -95,10 +96,10 @@ type Service struct {
initDone bool
mu sync.Mutex
taskQueues taskQueues
currPass int
jobTasks []taskEntry
// State to be persisted to snapshot.
state masterState
// The trainer that is currently saving model. This state is
// transient, does not need to be persisted to snapshot.
savingTrainer string
}
......@@ -141,8 +142,8 @@ func NewService(store Store, chunksPerTask int, timeoutDur time.Duration, failur
s.chunksPerTask = chunksPerTask
s.timeoutDur = timeoutDur
s.failureMax = failureMax
s.taskQueues = taskQueues{}
s.taskQueues.Pending = make(map[int]taskEntry)
s.state = masterState{}
s.state.Pending = make(map[int]taskEntry)
s.ready = make(chan struct{})
s.store = store
recovered, err := s.recover()
......@@ -180,7 +181,7 @@ func (s *Service) recover() (bool, error) {
}
dec := gob.NewDecoder(gr)
var tqs taskQueues
var tqs masterState
err = dec.Decode(&tqs)
if err != nil {
return false, err
......@@ -193,7 +194,12 @@ func (s *Service) recover() (bool, error) {
log.Errorln(err)
}
s.taskQueues = tqs
s.state = tqs
log.WithFields(s.logFields()).Infof("Master recovered from snapshot, scheduling pending task timeout check.")
for _, t := range s.state.Pending {
time.AfterFunc(s.timeoutDur, s.checkTimeoutFunc(t.Task.Meta.ID, t.Task.Meta.Epoch))
}
return true, nil
}
......@@ -208,7 +214,7 @@ func (s *Service) snapshot() error {
var buf bytes.Buffer
gw := gzip.NewWriter(&buf)
enc := gob.NewEncoder(gw)
err := enc.Encode(s.taskQueues)
err := enc.Encode(s.state)
if err != nil {
return err
}
......@@ -290,8 +296,7 @@ func (s *Service) SetDataset(globPaths []string, _ *int) error {
return err
}
s.jobTasks = partition(chunks, s.chunksPerTask)
s.taskQueues.Todo = s.jobTasks
s.state.Todo = partition(chunks, s.chunksPerTask)
err = s.snapshot()
if err != nil {
......@@ -319,17 +324,17 @@ func (s *Service) processFailedTask(t taskEntry, epoch int) {
}
}()
delete(s.taskQueues.Pending, t.Task.Meta.ID)
delete(s.state.Pending, t.Task.Meta.ID)
t.NumFailure++
if t.NumFailure > s.failureMax {
log.Warningf("Task %v failed %d times, discard.", t.Task, t.NumFailure)
s.taskQueues.Failed = append(s.taskQueues.Failed, t)
s.state.Failed = append(s.state.Failed, t)
return
}
log.Warningf("Task %v failed %d times, re-dispatch.", t.Task, t.NumFailure)
s.taskQueues.Todo = append(s.taskQueues.Todo, t)
s.state.Todo = append(s.state.Todo, t)
return
}
......@@ -338,7 +343,7 @@ func (s *Service) checkTimeoutFunc(taskID int, epoch int) func() {
s.mu.Lock()
defer s.mu.Unlock()
t, ok := s.taskQueues.Pending[taskID]
t, ok := s.state.Pending[taskID]
if !ok {
return
}
......@@ -350,10 +355,11 @@ func (s *Service) checkTimeoutFunc(taskID int, epoch int) func() {
// must be called with lock held.
func (s *Service) logFields() log.Fields {
return log.Fields{
"todoLen": len(s.taskQueues.Todo),
"pendingLen": len(s.taskQueues.Pending),
"doneLen": len(s.taskQueues.Done),
"failedLen": len(s.taskQueues.Failed),
"todoLen": len(s.state.Todo),
"pendingLen": len(s.state.Pending),
"doneLen": len(s.state.Done),
"failedLen": len(s.state.Failed),
"curPass": s.state.CurPass,
}
}
......@@ -366,17 +372,17 @@ func (s *Service) GetTask(passID int, task *Task) error {
s.mu.Lock()
defer s.mu.Unlock()
if passID < s.currPass {
if passID < s.state.CurPass {
return ErrPassBefore
}
if passID > s.currPass {
if passID > s.state.CurPass {
// Client may get run to pass after master when one client faster than the
// other
return ErrPassAfter
}
if len(s.taskQueues.Todo) == 0 {
if len(s.taskQueues.Done) == 0 && len(s.taskQueues.Pending) == 0 {
if len(s.state.Todo) == 0 {
if len(s.state.Done) == 0 && len(s.state.Pending) == 0 {
log.WithFields(s.logFields()).Warningln("All tasks failed, may start next pass")
return ErrAllTaskFailed
}
......@@ -384,10 +390,10 @@ func (s *Service) GetTask(passID int, task *Task) error {
return ErrNoMoreAvailable
}
t := s.taskQueues.Todo[0]
t := s.state.Todo[0]
t.Task.Meta.Epoch++
s.taskQueues.Todo = s.taskQueues.Todo[1:]
s.taskQueues.Pending[t.Task.Meta.ID] = t
s.state.Todo = s.state.Todo[1:]
s.state.Pending[t.Task.Meta.ID] = t
err := s.snapshot()
if err != nil {
return err
......@@ -409,7 +415,7 @@ func (s *Service) TaskFinished(taskID int, dummy *int) error {
s.mu.Lock()
defer s.mu.Unlock()
t, ok := s.taskQueues.Pending[taskID]
t, ok := s.state.Pending[taskID]
if !ok {
log.WithFields(s.logFields()).Warningln("Pending task #%d not found.", taskID)
return nil
......@@ -417,18 +423,18 @@ func (s *Service) TaskFinished(taskID int, dummy *int) error {
// task finished, reset timeout
t.NumFailure = 0
s.taskQueues.Done = append(s.taskQueues.Done, t)
delete(s.taskQueues.Pending, taskID)
s.state.Done = append(s.state.Done, t)
delete(s.state.Pending, taskID)
log.WithFields(s.logFields()).Infof("Task #%d finished.", taskID)
if len(s.taskQueues.Todo) == 0 && len(s.taskQueues.Pending) == 0 {
if len(s.state.Todo) == 0 && len(s.state.Pending) == 0 {
// increase master side pass count if all tasks finished
s.currPass++
s.taskQueues.Todo = s.jobTasks
s.taskQueues.Done = []taskEntry{}
s.state.CurPass++
s.state.Todo = append(s.state.Done, s.state.Failed...)
s.state.Done = []taskEntry{}
// TODO(typhoonzero): deal with failed tasks
s.taskQueues.Failed = []taskEntry{}
log.WithFields(s.logFields()).Warningf("all task finished, add new pass data, newpass: %d.", s.currPass)
s.state.Failed = []taskEntry{}
log.WithFields(s.logFields()).Warningf("all task finished, add new pass data, newpass: %d.", s.state.CurPass)
}
err := s.snapshot()
......@@ -447,7 +453,7 @@ func (s *Service) TaskFailed(meta TaskMeta, dummy *int) error {
s.mu.Lock()
defer s.mu.Unlock()
t, ok := s.taskQueues.Pending[meta.ID]
t, ok := s.state.Pending[meta.ID]
if !ok {
log.WithFields(s.logFields()).Warningln("TaskFailed:Pending task #%v not found.", t.Task.Meta)
return nil
......
......@@ -59,7 +59,7 @@ func initClient() [numPserver]int {
go func(l net.Listener) {
var cp pserver.Checkpoint
s, err := pserver.NewService(0, 1, "", nil, cp)
s, err := pserver.NewService(0, time.Hour, "", nil, cp)
if err != nil {
panic(err)
}
......
......@@ -103,7 +103,7 @@ func (p *EtcdClient) List() []Server {
time.Sleep(p.timeout)
continue
}
log.Infof("got value (%s) for key: %s", psAddr, psKey)
log.Debugf("got value (%s) for key: %s", psAddr, psKey)
servers[i].Index = i
servers[i].Addr = psAddr
}
......
......@@ -206,6 +206,7 @@ func (e *EtcdClient) GetKey(key string, timeout time.Duration) ([]byte, error) {
if err != nil {
return []byte{}, err
}
kvs := resp.Kvs
if len(kvs) == 0 {
return []byte{}, nil
......@@ -215,9 +216,14 @@ func (e *EtcdClient) GetKey(key string, timeout time.Duration) ([]byte, error) {
}
// PutKey put into etcd with value by key specified
func (e *EtcdClient) PutKey(key string, value []byte, timeout time.Duration) error {
func (e *EtcdClient) PutKey(key string, value []byte, timeout time.Duration, withLease bool) error {
ctx, cancel := context.WithTimeout(context.Background(), timeout)
_, err := e.client.Put(ctx, key, string(value), clientv3.WithLease(e.sess.Lease()))
var err error
if withLease {
_, err = e.client.Put(ctx, key, string(value), clientv3.WithLease(e.sess.Lease()))
} else {
_, err = e.client.Put(ctx, key, string(value))
}
cancel()
return err
}
......
......@@ -32,6 +32,7 @@ type optimizer struct {
opt *C.struct_paddle_optimizer
elementType ElementType
contentLen int
config []byte
}
func cArrayToSlice(p unsafe.Pointer, len int) []byte {
......@@ -70,6 +71,7 @@ func newOptimizer(paramWithConfigs ParameterWithConfig, State []byte) *optimizer
cstate = unsafe.Pointer(&s[0])
}
o.config = c
o.opt = C.paddle_create_optimizer((*C.uchar)(&c[0]), C.int(len(c)),
C.paddle_element_type(p.ElementType), cbuffer, C.int(paramBufferSize), (*C.char)(cstate), C.int(len(s)))
return o
......
......@@ -25,11 +25,13 @@ import (
"fmt"
"io/ioutil"
"os"
"path/filepath"
"path"
"strconv"
"sync"
"time"
uuid "github.com/satori/go.uuid"
log "github.com/sirupsen/logrus"
)
......@@ -44,7 +46,7 @@ var ErrCheckpointNotFound = errors.New("checkpoint not found")
const (
AlreadyInitialized = "pserver already initialized"
Uninitialized = "pserver not fully initialized"
CheckpointMD5Failed = "checkpoint file MD5 validation failed"
WrongChecksum = "checkpoint file checksum validation failed"
)
// Supported element types.
......@@ -73,11 +75,12 @@ type ParameterWithConfig struct {
// checkpointMeta saves checkpoint metadata
type checkpointMeta struct {
UUID string `json:"uuid"`
Path string `json:"path"`
MD5 string `json:"md5"`
Timestamp int64 `json:"timestamp"`
}
// Checkpoint is the pserver shard persist in file
// Checkpoint is the pserver shard persist in file.
type Checkpoint []parameterCheckpoint
// Gradient is the gradient of the parameter.
......@@ -90,50 +93,58 @@ type Service struct {
checkpointInterval time.Duration
checkpointPath string
client *EtcdClient
mu sync.Mutex
optMap map[string]*optimizer
}
// parameterCheckpoint saves parameter checkpoint
// parameterCheckpoint saves parameter checkpoint.
type parameterCheckpoint struct {
ParameterWithConfig
State []byte
}
// NewCheckpointFromFile loads parameters and state from checkpoint file
func NewCheckpointFromFile(cpPath string, idx int, e *EtcdClient) (Checkpoint, error) {
v, err := e.GetKey(PsPath+string(idx), 3*time.Second)
func loadMeta(e *EtcdClient, idx int) (meta checkpointMeta, err error) {
v, err := e.GetKey(PsCheckpoint+strconv.Itoa(idx), 3*time.Second)
if err != nil {
return nil, err
return
}
if len(v) == 0 {
return nil, ErrCheckpointNotFound
err = ErrCheckpointNotFound
return
}
var cpMeta checkpointMeta
if err = json.Unmarshal(v, &cpMeta); err != nil {
return nil, err
if err = json.Unmarshal(v, &meta); err != nil {
return
}
fn := filepath.Join(cpPath, cpMeta.UUID)
if _, err = os.Stat(fn); os.IsNotExist(err) {
return
}
// LoadCheckpoint loads checkpoint from file.
func LoadCheckpoint(e *EtcdClient, idx int) (Checkpoint, error) {
cpMeta, err := loadMeta(e, idx)
if err != nil {
return nil, err
}
content, err := ioutil.ReadFile(fn)
content, err := ioutil.ReadFile(cpMeta.Path)
if err != nil {
return nil, err
}
// TODO(helin): change MD5 to CRC since CRC is better for file
// checksum in our use case (emphasize speed over security).
h := md5.New()
md5 := hex.EncodeToString(h.Sum(content))
if md5 != cpMeta.MD5 {
return nil, errors.New(CheckpointMD5Failed)
return nil, errors.New(WrongChecksum)
}
dec := gob.NewDecoder(bytes.NewReader(content))
cp := Checkpoint{}
if err = dec.Decode(cp); err != nil {
var cp Checkpoint
if err = dec.Decode(&cp); err != nil {
return nil, err
}
return cp, nil
......@@ -193,6 +204,15 @@ func (s *Service) FinishInitParams(_ int, _ *int) error {
}
close(s.initialized)
go func() {
t := time.Tick(s.checkpointInterval)
for range t {
err := s.checkpoint()
if err != nil {
log.Errorln(err)
}
}
}()
return nil
}
......@@ -240,23 +260,36 @@ func (s *Service) GetParam(name string, parameter *Parameter) error {
return nil
}
// pserver save checkpoint
func (s *Service) doCheckpoint() (err error) {
<-s.initialized
s.mu.Lock()
defer s.mu.Unlock()
func traceTime(start time.Time, name string) {
elapsed := time.Since(start)
log.Infof("%s took %v", name, elapsed)
}
// checkpoint saves checkpoint to disk.
//
// checkpoint should be only called after the parameters are
// initialized.
func (s *Service) checkpoint() (err error) {
log.Infoln("Begin save checkpoint.")
defer traceTime(time.Now(), "save checkpoint")
s.mu.Lock()
cp := make([]parameterCheckpoint, len(s.optMap))
index := 0
// TODO(helin): write checkpoint incrementally to reduce memory
// footprint during checkpoint.
for name, opt := range s.optMap {
var pc parameterCheckpoint
pc.Param.Name = name
pc.Param.ElementType = opt.elementType
pc.Param.Content = opt.GetWeights()
pc.Config = opt.config
pc.State = opt.GetStates()
cp[index] = pc
index++
}
s.mu.Unlock()
var buf bytes.Buffer
encoder := gob.NewEncoder(&buf)
err = encoder.Encode(cp)
......@@ -264,32 +297,9 @@ func (s *Service) doCheckpoint() (err error) {
return
}
cpMeta := checkpointMeta{}
cpMeta.UUID = s.checkpointPath + strconv.Itoa(s.idx)
cpMeta.Timestamp = time.Now().UnixNano()
h := md5.New()
cpMeta.MD5 = hex.EncodeToString(h.Sum(buf.Bytes()))
cpMetajson, err := json.Marshal(cpMeta)
if err != nil {
return
}
err = s.client.PutKey(filepath.Join(PsCheckpoint, strconv.Itoa(s.idx)), cpMetajson, 3*time.Second)
if err != nil {
return
}
if _, err = os.Stat(cpMeta.UUID); os.IsNotExist(err) {
log.Info("checkpoint does not exists.")
} else {
err = os.Remove(cpMeta.UUID)
if err != nil {
log.Infof("Removing checkpoint %s failed", cpMeta.UUID)
} else {
log.Infof("checkpoint %s already exsits, removing ", cpMeta.UUID)
}
}
f, err := os.Create(cpMeta.UUID)
id := uuid.NewV4().String()
p := path.Join(s.checkpointPath, id)
f, err := os.Create(p)
if err != nil {
return
}
......@@ -317,5 +327,43 @@ func (s *Service) doCheckpoint() (err error) {
return
}
oldMeta, err := loadMeta(s.client, s.idx)
if err == ErrCheckpointNotFound {
log.Infoln("Do not have existing checkpoint.")
err = nil
}
if err != nil {
return
}
h := md5.New()
md5 := hex.EncodeToString(h.Sum(buf.Bytes()))
cpMeta := checkpointMeta{
UUID: id,
Timestamp: time.Now().UnixNano(),
MD5: md5,
Path: p,
}
json, err := json.Marshal(cpMeta)
if err != nil {
return
}
err = s.client.PutKey(PsCheckpoint+strconv.Itoa(s.idx), json, 3*time.Second, false)
if err != nil {
return
}
if oldMeta.Path != "" {
rmErr := os.Remove(oldMeta.Path)
if rmErr != nil {
// log error, but still treat checkpoint as
// successful.
log.Errorln(rmErr)
}
}
return
}
......@@ -30,7 +30,7 @@ const (
func TestServiceFull(t *testing.T) {
var cp pserver.Checkpoint
s, err := pserver.NewService(0, 1, "", nil, cp)
s, err := pserver.NewService(0, time.Hour, "", nil, cp)
if err != nil {
t.Error(err)
}
......@@ -102,7 +102,7 @@ func TestServiceFull(t *testing.T) {
func TestMultipleInit(t *testing.T) {
var cp pserver.Checkpoint
s, err := pserver.NewService(0, 1, "", nil, cp)
s, err := pserver.NewService(0, time.Hour, "", nil, cp)
if err != nil {
t.Fatal(err)
}
......@@ -119,7 +119,7 @@ func TestMultipleInit(t *testing.T) {
func TestUninitialized(t *testing.T) {
var cp pserver.Checkpoint
s, err := pserver.NewService(0, 1, "", nil, cp)
s, err := pserver.NewService(0, time.Hour, "", nil, cp)
err = s.SendGrad(pserver.Gradient{}, nil)
if err.Error() != pserver.Uninitialized {
t.Fatal(err)
......@@ -128,7 +128,7 @@ func TestUninitialized(t *testing.T) {
func TestBlockUntilInitialized(t *testing.T) {
var cp pserver.Checkpoint
s, err := pserver.NewService(0, 1, "", nil, cp)
s, err := pserver.NewService(0, time.Hour, "", nil, cp)
if err != nil {
t.Error(err)
}
......
......@@ -22,7 +22,5 @@ if(WITH_C_API)
endif()
if(WITH_SWIG_PY)
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/setup.py.in
${CMAKE_CURRENT_SOURCE_DIR}/setup.py)
add_subdirectory(api)
endif()
......@@ -82,9 +82,7 @@ SWIG_LINK_LIBRARIES(swig_paddle
add_custom_command(OUTPUT ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so
COMMAND cp ${CMAKE_CURRENT_BINARY_DIR}/swig_paddle.py ${PROJ_ROOT}/paddle/py_paddle
COMMAND cp ${CMAKE_CURRENT_BINARY_DIR}/_swig_paddle.so ${PROJ_ROOT}/paddle/py_paddle
COMMAND env ${py_env} ${PYTHON_EXECUTABLE} setup.py bdist_wheel
COMMAND ${CMAKE_COMMAND} -E touch dist/.timestamp
COMMAND rm -rf py_paddle.egg-info build
COMMAND ${CMAKE_COMMAND} -E touch .timestamp
WORKING_DIRECTORY ${PROJ_ROOT}/paddle
DEPENDS _swig_paddle
)
......@@ -92,10 +90,6 @@ add_custom_command(OUTPUT ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so
# TODO(yuyang18) : make wheel name calculated by cmake
add_custom_target(python_api_wheel ALL DEPENDS ${PROJ_ROOT}/paddle/py_paddle/_swig_paddle.so)
install(DIRECTORY ${CMAKE_SOURCE_DIR}/paddle/dist/
DESTINATION opt/paddle/share/wheels
)
if(WITH_TESTING)
IF(NOT PY_PIP_FOUND)
SET(PIP_SOURCES_DIR ${PYTHON_SOURCES_DIR}/pip)
......@@ -108,7 +102,7 @@ if(WITH_TESTING)
BUILD_COMMAND ""
INSTALL_COMMAND env ${py_env} ${PYTHON_EXECUTABLE} setup.py install
BUILD_IN_SOURCE 1
DEPENDS python setuptools python_api_wheel
#DEPENDS python setuptools python_api_wheel
)
ENDIF()
add_subdirectory(test)
......
......@@ -39,6 +39,7 @@ set(CUDA_CU_SOURCES
src/hl_cuda_lstm.cu
src/hl_top_k.cu
src/hl_batch_transpose.cu
src/hl_batch_norm.cu
src/hl_cuda_sequence.cu
src/hl_table_apply.cu)
......
/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#ifndef HL_BATCH_NORM_H_
#define HL_BATCH_NORM_H_
#include "hl_base.h"
/**
* @brief batch norm inferece.
*
* @param[in] input input data.
* @param[out] output output data.
* @param[in] scale batch normalization scale parameter (in original
* paper scale is referred to as gamma).
* @param[in] bias batch normalization bias parameter (in original
* paper scale is referred to as beta).
* @param[in] estimatedMean
* @param[in] estimatedVar The moving mean and variance
* accumulated during the training phase are passed
* as inputs here.
* @param[in] epsilon Epsilon value used in the batch
* normalization formula.
*/
extern void hl_batch_norm_cuda_inference(const real* input,
real* output,
const real* scale,
const real* bias,
const real* estimatedMean,
const real* estimatedVar,
const double epsilon,
size_t batchSize,
size_t channel,
size_t height,
size_t width);
#endif // HL_BATCH_NORM_H_
/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#include "hl_batch_norm.h"
__global__ void batchNormInference(real* output,
const real* input,
const real* scale,
const real* bias,
const real* estimatedMean,
const real* estimatedVar,
const double epsilon,
size_t batchSize,
size_t channel,
size_t height,
size_t width) {
const int tid = threadIdx.x;
const int num = channel * height * width;
const int batch = blockIdx.x;
for (int i = tid; i < num; i += blockDim.x) {
const int c = i / (height * width);
const int id = batch * num + i;
real val = input[id] - estimatedMean[c];
val /= sqrt(estimatedVar[c] + epsilon);
val *= scale[c];
val += bias[c];
output[id] = val;
}
}
void hl_batch_norm_cuda_inference(const real* input,
real* output,
const real* scale,
const real* bias,
const real* estimatedMean,
const real* estimatedVar,
const double epsilon,
size_t batchSize,
size_t channel,
size_t height,
size_t width) {
batchNormInference<<<batchSize, 256, 0, STREAM_DEFAULT>>>(output,
input,
scale,
bias,
estimatedMean,
estimatedVar,
epsilon,
batchSize,
channel,
height,
width);
CHECK_SYNC("hl_batch_norm_cuda_inference failed!");
}
......@@ -1023,14 +1023,6 @@ void hl_batch_norm_forward_inference(hl_tensor_descriptor inputDesc,
real beta = 1.0f;
cudnnBatchNormMode_t mode = CUDNN_BATCHNORM_SPATIAL;
int batch_size = ((cudnn_tensor_descriptor)inputDesc)->batch_size;
if (batch_size > 1024 && g_cudnn_lib_version < 6000) {
LOG(INFO) << " To process current batch data with size " << batch_size
<< " (>1024), cudnnBatchNorm requires cuDNN version >= 6000."
<< " If there is an error complaining CUDNN_STATUS_NOT_SUPPORTED,"
<< " just recompile PaddlePaddle with cuDNN >= 6000, replacing"
<< " current version " << g_cudnn_lib_version;
}
CHECK_CUDNN(
dynload::cudnnBatchNormalizationForwardInference(t_resource.cudnn_handle,
mode,
......
......@@ -35,6 +35,8 @@ add_dependencies(framework_py_proto framework_py_proto_init)
cc_library(backward SRCS backward.cc DEPS net_op)
cc_test(backward_test SRCS backward_test.cc DEPS backward)
if(WITH_PYTHON)
cc_library(paddle_pybind SHARED
SRCS pybind.cc
DEPS pybind python backward
......@@ -43,4 +45,6 @@ cc_library(paddle_pybind SHARED
add_op
mean_op
cross_entropy_op
fill_zeros_like_op
recurrent_op)
endif(WITH_PYTHON)
......@@ -260,6 +260,12 @@ class OpRegistry {
return CreateOp(op_desc.type(), inputs, outputs, attrs);
}
static bool SupportGPU(const std::string& op_type) {
OperatorWithKernel::OpKernelKey key;
key.place_ = platform::GPUPlace();
return OperatorWithKernel::AllOpKernels().at(op_type).count(key) != 0;
}
static std::shared_ptr<OperatorBase> CreateGradOp(const OperatorBase& op) {
PADDLE_ENFORCE(!op.IsNetOp(),
"Use framework::Backward to get backward ops");
......
......@@ -34,7 +34,7 @@ ExecutionContext::GetEigenDevice<platform::GPUPlace, Eigen::GpuDevice>() const {
#endif
const std::string& OperatorBase::Input(const std::string& name) const {
PADDLE_ENFORCE(in_out_idxs_ != nullptr,
PADDLE_ENFORCE_NOT_NULL(in_out_idxs_,
"Input Output Indices could not be nullptr");
auto it = in_out_idxs_->find(name);
PADDLE_ENFORCE(it != in_out_idxs_->end(), "no key [%s] in in_out_idxs_",
......@@ -49,7 +49,7 @@ const std::string& OperatorBase::Input(const std::string& name) const {
}
std::vector<std::string> OperatorBase::Inputs(const std::string& name) const {
PADDLE_ENFORCE(in_out_idxs_ != nullptr, "IO Idx could not be nullptr");
PADDLE_ENFORCE_NOT_NULL(in_out_idxs_, "IO Idx could not be nullptr");
auto input_format = GetAttr<std::vector<int>>("input_format");
auto offset = in_out_idxs_->at(name);
PADDLE_ENFORCE(input_format.at(static_cast<size_t>(offset) + 1) <=
......@@ -62,7 +62,7 @@ std::vector<std::string> OperatorBase::Inputs(const std::string& name) const {
}
const std::string& OperatorBase::Output(const std::string& name) const {
PADDLE_ENFORCE(in_out_idxs_ != nullptr, "InOut Indice could not be nullptr");
PADDLE_ENFORCE_NOT_NULL(in_out_idxs_, "InOut Indice could not be nullptr");
auto it = in_out_idxs_->find(name);
PADDLE_ENFORCE(it != in_out_idxs_->end(), "no key [%s] in in_out_idxs_",
name);
......@@ -76,7 +76,7 @@ const std::string& OperatorBase::Output(const std::string& name) const {
}
std::vector<std::string> OperatorBase::Outputs(const std::string& name) const {
PADDLE_ENFORCE(in_out_idxs_ != nullptr, "InOut Indice could not be nullptr");
PADDLE_ENFORCE_NOT_NULL(in_out_idxs_, "InOut Indice could not be nullptr");
auto output_format = GetAttr<std::vector<int>>("output_format");
auto offset = in_out_idxs_->at(name);
PADDLE_ENFORCE(output_format.at(static_cast<size_t>(offset) + 1) <=
......
......@@ -167,15 +167,15 @@ class OperatorContext {
template <typename T>
const T* Input(const size_t index) const {
auto var = InputVar(index);
PADDLE_ENFORCE(var != nullptr, "Input(%d) should not be nullptr", index);
PADDLE_ENFORCE_NOT_NULL(var, "Input(%d) should not be nullptr", index);
return &var->Get<T>();
}
template <typename T>
T* Output(const size_t index) const {
auto var = OutputVar(index);
PADDLE_ENFORCE(
var != nullptr,
PADDLE_ENFORCE_NOT_NULL(
var,
"Output(%d) not be nullptr, which means variable [%s] does not "
"exist in scope",
index, op_.outputs_[index]);
......@@ -185,14 +185,14 @@ class OperatorContext {
template <typename T>
const T* Input(const std::string& name) const {
auto var = InputVar(name);
PADDLE_ENFORCE(var != nullptr, "Input(%s) should not be nullptr", name);
PADDLE_ENFORCE_NOT_NULL(var, "Input(%s) should not be nullptr", name);
return &var->Get<T>();
}
template <typename T>
T* Output(const std::string& name) const {
auto var = OutputVar(name);
PADDLE_ENFORCE(var != nullptr, "Output(%s) should not be nullptr", name);
PADDLE_ENFORCE_NOT_NULL(var, "Output(%s) should not be nullptr", name);
return var->GetMutable<T>();
}
......@@ -204,9 +204,9 @@ class OperatorContext {
std::transform(names.begin(), names.end(), std::back_inserter(res),
[&](const std::string& sub_name) {
auto var = scope_.FindVar(sub_name);
PADDLE_ENFORCE(var != nullptr,
"MultiInput(%s:%s) should not be nullptr",
name, sub_name);
PADDLE_ENFORCE_NOT_NULL(
var, "MultiInput(%s:%s) should not be nullptr", name,
sub_name);
return &var->Get<T>();
});
return res;
......@@ -220,9 +220,9 @@ class OperatorContext {
std::transform(names.begin(), names.end(), std::back_inserter(res),
[&](const std::string& sub_name) {
auto var = scope_.FindVar(sub_name);
PADDLE_ENFORCE(var != nullptr,
"MultiOutput(%s:%s) should not be nullptr",
name, sub_name);
PADDLE_ENFORCE_NOT_NULL(
var, "MultiOutput(%s:%s) should not be nullptr", name,
sub_name);
return var->GetMutable<T>();
});
return res;
......
......@@ -32,7 +32,7 @@ limitations under the License. */
namespace py = pybind11;
USE_OP(add_two);
USE_OP(onehot_cross_entropy);
USE_OP_CPU(onehot_cross_entropy);
USE_OP_WITHOUT_KERNEL(fc);
USE_OP(sgd);
USE_OP(mul);
......@@ -40,6 +40,7 @@ USE_OP(mean);
USE_OP(sigmoid);
USE_OP(softmax);
USE_OP(rowwise_add);
USE_OP(fill_zeros_like);
USE_OP_WITHOUT_KERNEL(recurrent_op);
namespace paddle {
namespace framework {
......@@ -200,6 +201,8 @@ All parameter, weight, gradient are variables in Paddle.
return OpRegistry::CreateOp(desc);
});
operator_base.def_static("support_gpu", &OpRegistry::SupportGPU);
operator_base.def("backward",
[](const OperatorBase &forwardOp,
const std::unordered_set<std::string> &no_grad_vars) {
......
......@@ -127,8 +127,8 @@ class Tensor {
memory::PODDeleter<T, Place>(place)),
place_(place),
size_(size) {
PADDLE_ENFORCE(ptr_ != nullptr, "Insufficient %s memory to allocation.",
is_cpu_place(place_) ? "CPU" : "GPU");
PADDLE_ENFORCE_NOT_NULL(ptr_, "Insufficient %s memory to allocation.",
(is_cpu_place(place_) ? "CPU" : "GPU"));
}
virtual size_t size() const { return size_; }
......
......@@ -14,15 +14,16 @@ limitations under the License. */
#pragma once
#include "paddle/memory/memcpy.h"
#include "paddle/platform/enforce.h"
namespace paddle {
namespace framework {
template <typename T>
inline void Tensor::check_memory_size() const {
PADDLE_ENFORCE(holder_ != nullptr,
"Tenosr holds no memory. Call Tensor::mutable_data first.");
PADDLE_ENFORCE(holder_->size() >= product(dims_) * sizeof(T) + offset_,
PADDLE_ENFORCE_NOT_NULL(
holder_, "Tenosr holds no memory. Call Tensor::mutable_data first.");
PADDLE_ENFORCE_GE(holder_->size(), product(dims_) * sizeof(T) + offset_,
"Tensor's dims_ is out of bound. Call Tensor::mutable_data "
"first to re-allocate memory.");
}
......@@ -51,7 +52,7 @@ inline T* Tensor::mutable_data(DDim dims, platform::Place place) {
template <typename T>
inline T* Tensor::mutable_data(platform::Place place) {
static_assert(std::is_pod<T>::value, "T must be POD");
PADDLE_ENFORCE(product(dims_) > 0,
PADDLE_ENFORCE_GT(product(dims_), 0,
"Tensor's numel must be larger than zero to call "
"Tensor::mutable_data. Call Tensor::set_dim first.");
/* some versions of boost::variant don't have operator!= */
......@@ -120,11 +121,11 @@ inline void Tensor::CopyFrom(const Tensor& src,
template <typename T>
inline Tensor Tensor::Slice(const int& begin_idx, const int& end_idx) const {
check_memory_size<T>();
PADDLE_ENFORCE(begin_idx >= 0, "Slice begin index is less than zero.");
PADDLE_ENFORCE(end_idx <= dims_[0], "Slice end index is out of bound.");
PADDLE_ENFORCE(begin_idx < end_idx,
PADDLE_ENFORCE_GE(begin_idx, 0, "Slice begin index is less than zero.");
PADDLE_ENFORCE_LE(end_idx, dims_[0], "Slice end index is out of bound.");
PADDLE_ENFORCE_LT(begin_idx, end_idx,
"Begin index must be less than end index.");
PADDLE_ENFORCE(dims_[0] != 1, "Can not slice a tensor with dims_[0] = 1.");
PADDLE_ENFORCE_NE(dims_[0], 1, "Can not slice a tensor with dims_[0] = 1.");
int base = product(dims_) / dims_[0];
Tensor dst;
dst.holder_ = holder_;
......
......@@ -36,7 +36,8 @@ TEST(Tensor, DataAssert) {
} catch (paddle::platform::EnforceNotMet err) {
caught = true;
std::string msg =
"Tenosr holds no memory. Call Tensor::mutable_data first.";
"holder_ should not be null\nTenosr holds no memory. Call "
"Tensor::mutable_data first.";
const char* what = err.what();
for (size_t i = 0; i < msg.length(); ++i) {
ASSERT_EQ(what[i], msg[i]);
......@@ -111,7 +112,8 @@ TEST(Tensor, ShareDataWith) {
} catch (paddle::platform::EnforceNotMet err) {
caught = true;
std::string msg =
"Tenosr holds no memory. Call Tensor::mutable_data first.";
"holder_ should not be null\nTenosr holds no memory. Call "
"Tensor::mutable_data first.";
const char* what = err.what();
for (size_t i = 0; i < msg.length(); ++i) {
ASSERT_EQ(what[i], msg[i]);
......
......@@ -14,6 +14,7 @@ limitations under the License. */
#include "CudnnBatchNormLayer.h"
#include "Layer.h"
#include "paddle/cuda/include/hl_batch_norm.h"
#include "paddle/utils/Stat.h"
namespace paddle {
......@@ -79,6 +80,7 @@ void CudnnBatchNormLayer::forward(PassType passType) {
savedInvVar);
} else {
// used movingMean and movingVar in testing
if (batchSize <= 1024) {
hl_batch_norm_forward_inference(ioDesc_,
input,
ioDesc_,
......@@ -89,6 +91,22 @@ void CudnnBatchNormLayer::forward(PassType passType) {
movingMean,
movingVar,
EPS);
} else {
// There is a limitation in cudnn library.
// When the batch size is larger than 1024 in cuDNN v5.1,
// the cudnnBatchNormalizationForwardInference will fail.
hl_batch_norm_cuda_inference(input,
output,
gamma,
beta,
movingMean,
movingVar,
EPS,
batchSize,
channels_,
imageH_,
imageW_);
}
}
/* activation */ {
......
/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#include "Layer.h"
#include "paddle/math/Matrix.h"
#include "paddle/math/Vector.h"
#include "paddle/utils/Logging.h"
#include "paddle/utils/Stat.h"
namespace paddle {
class SubNestedSequenceLayer : public Layer {
public:
explicit SubNestedSequenceLayer(const LayerConfig& config) : Layer(config) {}
bool init(const LayerMap& layerMap,
const ParameterMap& parameterMap) override;
void forward(PassType passType) override;
void backward(const UpdateCallback& callback = nullptr) override;
private:
/*
* This functions generates the indices of rows in a batch according to the
* indices of selected sub-sequence in each sequence.
*
* Examples:
* selectedIndices:
* [
* [0, 1, -1],
* [0, 1, 2],
* [0, -1, -1],
* [0, 2, 3],
* ]
* inputSeqInfo:
* [
* [0,3,4],
* [4,5,7,10,15],
* [15,20],
* [20,22,23,25,28]
* ]
*
* ths output is saved to private member rowIndice_;
* [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,
* 16,17,18,19,20,21,22,23,24,25,26,27]
*/
void calSelectedCols(const MatrixPtr selectedIndices,
const std::vector<std::vector<int>>& inputSeqInfo);
// if the second input of this layer is on GPU memory, copy it to CPU memory.
MatrixPtr selIdsCpu_;
// reorganized sequenceStartPositions and subSequenceStartPositions
// into a 2d vector to facilitate the sequence selection process.
std::vector<std::vector<int>> inputSeqInfoVec_;
// the final selected row indices in a batch,
// rowIdx_ and selectedRows_ actually share a same memory.
IVectorPtr rowIndice_;
std::vector<int> selectedRows_;
};
REGISTER_LAYER(sub_nested_seq, SubNestedSequenceLayer);
bool SubNestedSequenceLayer::init(const LayerMap& layerMap,
const ParameterMap& parameterMap) {
/* Initialize the basic parent class */
Layer::init(layerMap, parameterMap);
CHECK_EQ(2U, inputLayers_.size());
setNeedSequenceInfo(false);
return true;
}
void SubNestedSequenceLayer::calSelectedCols(
const MatrixPtr selectedIndices,
const std::vector<std::vector<int>>& inputSeqInfo) {
selectedRows_.clear();
std::vector<int> outSeqStartInfo(1, 0);
std::vector<int> outSubSeqStartInfo(1, 0);
size_t seqNum = selectedIndices->getHeight();
size_t beamSize = selectedIndices->getWidth();
for (size_t i = 0; i < seqNum; ++i) {
for (size_t j = 0; j < beamSize; ++j) {
if (selectedIndices->getElement(i, j) == -1.) break;
int selSubSeqIdx = selectedIndices->getElement(i, j);
CHECK_GT(inputSeqInfoVec_[i].size() - 1, selSubSeqIdx);
size_t subSeqLen = inputSeqInfoVec_[i][selSubSeqIdx + 1] -
inputSeqInfoVec_[i][selSubSeqIdx];
for (size_t k = 0; k < subSeqLen; ++k)
selectedRows_.push_back(inputSeqInfoVec_[i][selSubSeqIdx] + k);
outSubSeqStartInfo.push_back(outSubSeqStartInfo.back() + subSeqLen);
}
outSeqStartInfo.push_back(outSubSeqStartInfo.back());
}
if (useGpu_) {
rowIndice_ = IVector::create(selectedRows_.size(), useGpu_);
rowIndice_->copyFrom(selectedRows_.data(), selectedRows_.size());
} else {
rowIndice_ =
IVector::create(selectedRows_.data(), selectedRows_.size(), useGpu_);
}
// create the sequence information for the output.
ICpuGpuVector::resizeOrCreate(
output_.sequenceStartPositions, outSeqStartInfo.size(), false);
output_.sequenceStartPositions->copyFrom(
outSeqStartInfo.data(), outSeqStartInfo.size(), false);
ICpuGpuVector::resizeOrCreate(
output_.subSequenceStartPositions, outSubSeqStartInfo.size(), false);
output_.subSequenceStartPositions->copyFrom(
outSubSeqStartInfo.data(), outSubSeqStartInfo.size(), false);
}
void SubNestedSequenceLayer::forward(PassType passType) {
Layer::forward(passType);
const Argument& inputSeq = getInput(0);
CHECK(inputSeq.hasSubseq()) << "The first input of SubNestSequence layer "
<< "must be a nested sequence.";
const MatrixPtr selectedIndices = getInputValue(1);
CHECK_EQ(inputSeq.getNumSequences(), selectedIndices->getHeight());
if (dynamic_cast<GpuMatrix*>(selectedIndices.get())) {
/*
* Currently, the second input for this layer is generated by
* kmax_sequence_score_layer whose output is always stored on CPU,
* or a data_layer which canbe on GPU.
*
* If the second input is on GPU, copy it to CPU memory, because this
* input always uses very few memory, and operations related to it are
* all logic control, not computations.
*/
Matrix::resizeOrCreate(selIdsCpu_,
selectedIndices->getHeight(),
selectedIndices->getWidth(),
false /* trans */,
false /* useGpu */);
selIdsCpu_->copyFrom(*selectedIndices);
} else {
selIdsCpu_ = selectedIndices;
}
Argument::reorganizeSeqInfo(inputSeq.sequenceStartPositions,
inputSeq.subSequenceStartPositions,
inputSeqInfoVec_);
calSelectedCols(selIdsCpu_, inputSeqInfoVec_);
resetOutput(selectedRows_.size(), getSize());
getOutputValue()->selectRows(*getInputValue(0), *rowIndice_);
}
void SubNestedSequenceLayer::backward(const UpdateCallback& callback) {
MatrixPtr inputSeqGrad = getInputGrad(0);
MatrixPtr outputGrad = getOutputGrad();
if (inputSeqGrad) outputGrad->addToRows(*inputSeqGrad, *rowIndice_);
}
} // namespace paddle
......@@ -21,6 +21,8 @@ limitations under the License. */
#include "paddle/utils/GlobalConstants.h"
#include "LayerGradUtil.h"
#include "paddle/cuda/include/hl_batch_norm.h"
#include "paddle/math/tests/TensorCheck.h"
#include "paddle/testing/TestUtil.h"
using namespace paddle; // NOLINT
......@@ -117,6 +119,74 @@ TEST(Layer, batchNorm) {
CHECK_EQ(static_cast<int>(convLayer->getOutputValue()->getWidth()), 576);
}
#ifndef PADDLE_ONLY_CPU
void batchNormInference(int n, int c, int h, int w) {
MatrixPtr input = std::make_shared<GpuMatrix>(n, c * h * w);
MatrixPtr cudnnOut = std::make_shared<GpuMatrix>(n, c * h * w);
MatrixPtr cudaOut = std::make_shared<GpuMatrix>(n, c * h * w);
MatrixPtr cudnnCheck = std::make_shared<CpuMatrix>(n, c * h * w);
MatrixPtr cudaCheck = std::make_shared<CpuMatrix>(n, c * h * w);
input->randomizeUniform();
cudnnOut->zeroMem();
cudaOut->zeroMem();
MatrixPtr scale = std::make_shared<GpuMatrix>(1, c);
scale->randomizeUniform();
MatrixPtr bias = std::make_shared<GpuMatrix>(1, c);
bias->randomizeUniform();
MatrixPtr movingMean = std::make_shared<GpuMatrix>(1, c);
movingMean->randomizeUniform();
MatrixPtr movingVar = std::make_shared<GpuMatrix>(1, c);
movingVar->randomizeUniform();
movingVar->clip(0.01, 50);
hl_tensor_descriptor ioDesc;
hl_tensor_descriptor bnDesc;
hl_create_tensor_descriptor(&ioDesc);
hl_create_tensor_descriptor(&bnDesc);
hl_tensor_reshape(ioDesc, n, c, h, w);
hl_tensor_reshape(bnDesc, 1, c, 1, 1);
double EPS = 1E-5;
hl_batch_norm_forward_inference(ioDesc,
input->getData(),
ioDesc,
cudnnOut->getData(),
bnDesc,
scale->getData(),
bias->getData(),
movingMean->getData(),
movingVar->getData(),
EPS);
hl_batch_norm_cuda_inference(input->getData(),
cudaOut->getData(),
scale->getData(),
bias->getData(),
movingMean->getData(),
movingVar->getData(),
EPS,
n,
c,
h,
w);
cudnnCheck->copyFrom(*cudnnOut);
cudaCheck->copyFrom(*cudaOut);
autotest::TensorCheckErr(*cudnnCheck, *cudaCheck);
hl_destroy_tensor_descriptor(ioDesc);
hl_destroy_tensor_descriptor(bnDesc);
}
TEST(BatchNorm, Inference) {
batchNormInference(33, 267, 1, 1);
batchNormInference(19, 105, 4, 4);
}
#endif
int main(int argc, char** argv) {
testing::InitGoogleTest(&argc, argv);
initMain(argc, argv);
......
......@@ -1899,6 +1899,84 @@ TEST(Layer, CropLayer) {
}
}
vector<real> randSampling(real range, int n) {
CHECK_GE(range, n);
vector<real> num(range);
iota(begin(num), end(num), 0.);
if (range == n) return num;
random_shuffle(begin(num), end(num));
num.resize(n);
sort(begin(num), end(num));
return num;
}
TEST(Layer, SubNestedSequenceLayer) {
// layer size is not crutial for this layer,
// so use a small layer size in unittest
const int layerSize = 4;
const int maxSeqNum = 50;
const int maxSeqLen = 50;
const int maxBeamSize = 32;
srand((size_t)(time(NULL)));
int beamSize = 1 + (rand() % maxBeamSize);
TestConfig config;
config.layerConfig.set_type("sub_nested_seq");
config.layerConfig.set_name("sub_nested_seq_layer");
config.layerConfig.set_size(layerSize);
int seqNum = 1 + (rand() % maxSeqNum);
// sequence information for the first input, it is a nested sequence
vector<int> seqStartPos(seqNum + 1, 0);
vector<int> subSeqStartPos(1, 0);
// selected indices
MatrixPtr selectedIndices = Matrix::create(seqNum, beamSize, false, false);
selectedIndices->one();
selectedIndices->mulScalar(-1.);
real* indicesData = selectedIndices->getData();
for (int i = 0; i < seqNum; ++i) {
int subSeqNum = 1 + (rand() % maxSeqNum);
for (int j = 0; j < subSeqNum; ++j) {
subSeqStartPos.push_back(subSeqStartPos.back() +
(1 + (rand() % maxSeqLen)));
}
vector<real> selSeqs =
randSampling(static_cast<real>(subSeqNum), min(beamSize, subSeqNum));
memcpy(indicesData + (i * beamSize),
selSeqs.data(),
selSeqs.size() * sizeof(real));
seqStartPos[i + 1] = subSeqStartPos.back();
}
MatrixPtr seqInputPtr =
Matrix::create(seqStartPos.back(), layerSize, false, false);
seqInputPtr->randomizeUniform();
config.inputDefs.push_back({INPUT_SELF_DEFINE_DATA,
"nested_seq_input",
seqInputPtr,
seqStartPos,
subSeqStartPos});
config.layerConfig.add_inputs();
config.inputDefs.push_back(
{INPUT_SELF_DEFINE_DATA, "selected_indices", selectedIndices});
config.layerConfig.add_inputs();
for (auto useGpu : {false, true}) {
testLayerGrad(config,
"sub_nested_seq",
/* batchSize */ seqNum,
/* trans */ false,
/* useGpu*/ useGpu,
/* useWeight */ false);
}
}
TEST(Layer, ClipLayer) {
const size_t batchSize = 128;
const size_t size = 512;
......
......@@ -22,8 +22,7 @@ class AddOp : public OperatorWithKernel {
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE_EQ(ctx.InputSize(), 2);
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1);
PADDLE_ENFORCE(ctx.InputVar(0) != nullptr && ctx.InputVar(1) != nullptr,
"Inputs of AddOp must all be set");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(0), "Inputs of AddOp must all be set");
PADDLE_ENFORCE(ctx.OutputVar(0) != nullptr,
"Outputs of AddOp must all be set");
PADDLE_ENFORCE(ctx.Input<Tensor>(0)->dims() == ctx.Input<Tensor>(1)->dims(),
......
......@@ -20,17 +20,18 @@ namespace operators {
class OnehotCrossEntropyOp : public OperatorWithKernel {
protected:
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 2,
PADDLE_ENFORCE_EQ(ctx.InputSize(), 2,
"Input size of OnehotCrossEntropyOp must be two");
PADDLE_ENFORCE(ctx.OutputSize() == 1,
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1,
"Output size of OnehotCrossEntropyOp must be one");
PADDLE_ENFORCE(ctx.InputVar(0) != nullptr && ctx.InputVar(1) != nullptr,
"Inputs of OnehotCrossEntropyOp must all be set");
PADDLE_ENFORCE(ctx.OutputVar(0) != nullptr,
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(0),
"0-th input of OnehotCrossEntropyOp should be set");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(1),
"1-th input of OnehotCrossEntropyOp should be set");
PADDLE_ENFORCE_NOT_NULL(ctx.OutputVar(0),
"Outputs of OnehotCrossEntropyOp must all be set");
PADDLE_ENFORCE(ctx.Input<Tensor>(0)->dims().size() == 2,
"X's dimension must be 2.");
PADDLE_ENFORCE(ctx.Output<Tensor>(0)->dims().size() == 1,
PADDLE_ENFORCE_EQ(ctx.Input<Tensor>(0)->dims().size(), 2);
PADDLE_ENFORCE_EQ(ctx.Output<Tensor>(0)->dims().size(), 1,
"label's dimension must be 1.");
ctx.Output<Tensor>(0)->Resize({ctx.Input<Tensor>(0)->dims()[0]});
}
......
......@@ -14,6 +14,3 @@
#define EIGEN_USE_GPU
#include "paddle/operators/cross_entropy_op.h"
REGISTER_OP_GPU_KERNEL(onehot_cross_entropy,
ops::OnehotCrossEntropyOpKernel<ops::GPUPlace, float>);
......@@ -18,7 +18,24 @@ limitations under the License. */
namespace paddle {
namespace operators {
static const float kCrossEntropyLogThreshold{1e-20};
template <typename T>
T tolerable_value(T x) {
static_assert(std::is_floating_point<T>::value,
"tolerable_value works only on float, "
"double and double double.");
const T kApproInf = 1e20;
if (x == INFINITY) {
return kApproInf;
}
if (x == -INFINITY) {
return -kApproInf;
}
return x;
}
template <typename Place, typename T>
class OnehotCrossEntropyOpKernel : public OpKernel {
......@@ -36,10 +53,9 @@ class OnehotCrossEntropyOpKernel : public OpKernel {
int batch_size = X->dims()[0];
int class_num = X->dims()[1];
// Y[i] = -log(X[i][j])
for (int i = 0; i < batch_size; ++i) {
Ydata[i] = -std::log(std::max(Xdata[i * class_num + label_data[i]],
kCrossEntropyLogThreshold));
int index = i * class_num + label_data[i];
Ydata[i] = -tolerable_value(std::log(Xdata[index]));
}
}
};
......@@ -62,9 +78,8 @@ class OnehotCrossEntropyGradientOpKernel : public OpKernel {
const int class_num = X->dims()[1];
for (int i = 0; i < batch_size; ++i) {
dXdata[i * class_num + label_data[i]] =
-dYdata[i] / std::max(Xdata[i * class_num + label_data[i]],
kCrossEntropyLogThreshold);
int index = i * class_num + label_data[i];
dXdata[index] = -tolerable_value(dYdata[i] / Xdata[index]);
}
}
};
......
......@@ -13,8 +13,6 @@ See the License for the specific language governing permissions and
limitations under the License. */
#include "paddle/operators/fill_zeros_like_op.h"
#include "paddle/framework/op_registry.h"
#include "paddle/framework/tensor.h"
namespace paddle {
namespace operators {
......@@ -22,13 +20,13 @@ namespace operators {
class FillZerosLikeOp : public framework::OperatorWithKernel {
protected:
void InferShape(const framework::InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 1UL,
PADDLE_ENFORCE_EQ(ctx.InputSize(), 1UL,
"Input size of FillZerosLikeOp must be one.");
PADDLE_ENFORCE(ctx.OutputSize() == 1UL,
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1UL,
"Output size of AddOp must be one.");
PADDLE_ENFORCE(ctx.InputVar(0) != nullptr,
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(0),
"Input of FillZerosLikeOp must be set.");
PADDLE_ENFORCE(ctx.OutputVar(0) != nullptr,
PADDLE_ENFORCE_NOT_NULL(ctx.OutputVar(0),
"Output of FillZerosLikeOp must be set.");
ctx.Output<framework::Tensor>(0)->Resize(
ctx.Input<framework::Tensor>(0)->dims());
......
......@@ -12,6 +12,7 @@
See the License for the specific language governing permissions and
limitations under the License. */
#define EIGEN_USE_GPU
#include "paddle/framework/op_registry.h"
#include "paddle/operators/fill_zeros_like_op.h"
......
......@@ -13,9 +13,7 @@ See the License for the specific language governing permissions and
limitations under the License. */
#pragma once
#include "glog/logging.h"
#include "paddle/framework/eigen.h"
#include "paddle/framework/operator.h"
#include "paddle/operators/type_alias.h"
namespace paddle {
namespace operators {
......@@ -26,7 +24,8 @@ class FillZerosLikeKernel : public framework::OpKernel {
void Compute(const framework::ExecutionContext& context) const override {
auto* output = context.Output<framework::Tensor>(0);
output->mutable_data<T>(context.GetPlace());
framework::EigenVector<T>::Flatten(*output).setZero();
auto t = framework::EigenVector<T>::Flatten(*output);
t.device(context.GetEigenDevice<Place>()) = t.constant(T(0));
}
};
......
......@@ -20,10 +20,10 @@ namespace operators {
class MeanOp : public OperatorWithKernel {
protected:
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 1, "Input size of AddOp must be one");
PADDLE_ENFORCE(ctx.OutputSize() == 1, "Output size of AddOp must be one");
PADDLE_ENFORCE(ctx.InputVar(0) != nullptr && ctx.OutputVar(0) != nullptr,
"Input/Output of MeanOp must be initialized.");
PADDLE_ENFORCE_EQ(ctx.InputSize(), 1, "Input size of AddOp must be one");
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1, "Output size of AddOp must be one");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(0), "input should be set");
PADDLE_ENFORCE_NOT_NULL(ctx.OutputVar(0), "output should be set");
ctx.Output<Tensor>(0)->Resize(framework::make_ddim({1}));
}
};
......
......@@ -70,15 +70,15 @@ class NetOp : public framework::OperatorBase {
*/
void AddOp(const std::shared_ptr<OperatorBase>& op) {
PADDLE_ENFORCE(!add_op_done_, "Cannot AddOp when this network is sealed");
PADDLE_ENFORCE(op != nullptr, "Cannot Insert Null op");
PADDLE_ENFORCE_NOT_NULL(op, "Cannot Insert Null op");
ops_.push_back(op);
}
void InsertOp(size_t pos, const std::shared_ptr<OperatorBase>& op) {
PADDLE_ENFORCE(!add_op_done_,
"Cannot InsertOp when this network is sealed");
PADDLE_ENFORCE(op != nullptr, "Cannot Insert Null op");
PADDLE_ENFORCE(pos <= ops_.size(), "Out of range");
PADDLE_ENFORCE_NOT_NULL(op, "Cannot Insert Null op");
PADDLE_ENFORCE_LE(pos, ops_.size(), "Out of range");
ops_.insert(ops_.begin() + pos, op);
}
......
......@@ -20,11 +20,11 @@ namespace operators {
class SGDOp : public OperatorWithKernel {
protected:
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 2, "Input size of SGDOp must be two");
PADDLE_ENFORCE(ctx.OutputSize() == 1, "Output size of SGDOp must be one");
PADDLE_ENFORCE(ctx.InputVar(0) != nullptr, "inputs[0] mast be set");
PADDLE_ENFORCE(ctx.InputVar(1) != nullptr, "inputs[1] mast be set");
PADDLE_ENFORCE(ctx.OutputVar(0) != nullptr, "outputs[0] mast be set");
PADDLE_ENFORCE_EQ(ctx.InputSize(), 2, "Input size of SGDOp must be two");
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1, "Output size of SGDOp must be one");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(0), "inputs[0] mast be set");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(1), "inputs[1] mast be set");
PADDLE_ENFORCE_NOT_NULL(ctx.OutputVar(0), "outputs[0] mast be set");
PADDLE_ENFORCE(ctx.Input<Tensor>(0)->dims() == ctx.Input<Tensor>(1)->dims(),
"Two input of SGD Op's dimension must be same.");
ctx.Output<Tensor>(0)->Resize(ctx.Input<Tensor>(0)->dims());
......
......@@ -20,11 +20,11 @@ namespace operators {
class SoftmaxOp : public OperatorWithKernel {
protected:
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 1UL,
PADDLE_ENFORCE_EQ(ctx.InputSize(), 1UL,
"Only one input is need for softmax");
PADDLE_ENFORCE(ctx.Input<Tensor>("X")->dims().size() == 2UL,
PADDLE_ENFORCE_EQ(ctx.Input<Tensor>("X")->dims().size(), 2UL,
"The input of softmax op must be matrix");
PADDLE_ENFORCE(ctx.OutputSize() == 1UL,
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1UL,
"Only one output is need for softmax");
ctx.Output<Tensor>("Y")->Resize(ctx.Input<Tensor>("X")->dims());
}
......@@ -43,12 +43,12 @@ class SoftmaxOpMaker : public OpProtoAndCheckerMaker {
class SoftmaxOpGrad : public OperatorWithKernel {
protected:
void InferShape(const InferShapeContext &ctx) const override {
PADDLE_ENFORCE(ctx.InputSize() == 3UL,
PADDLE_ENFORCE_EQ(ctx.InputSize(), 3UL,
"Input of SoftmaxOpGrad should be 3, X, Y, YG");
PADDLE_ENFORCE(ctx.OutputSize() == 1UL,
PADDLE_ENFORCE_EQ(ctx.OutputSize(), 1UL,
"Output of SoftmaxOpGrad should be 1");
PADDLE_ENFORCE(ctx.InputVar("Y") != nullptr, "Input(Y) should not be null");
PADDLE_ENFORCE(ctx.InputVar(framework::GradVarName("Y")) != nullptr,
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar("Y"), "Input(Y) should not be null");
PADDLE_ENFORCE_NOT_NULL(ctx.InputVar(framework::GradVarName("Y")),
"Input(Y@GRAD) should not be null");
PADDLE_ENFORCE(ctx.Input<Tensor>("Y")->dims() ==
ctx.Input<Tensor>(framework::GradVarName("Y"))->dims(),
......
......@@ -666,4 +666,24 @@ void Argument::subArgFrom(const Argument& input,
}
}
void Argument::reorganizeSeqInfo(
const ICpuGpuVectorPtr seqStartPos,
const ICpuGpuVectorPtr subSeqStartPos,
std::vector<std::vector<int>>& reorganizedSeqInfo) {
int* seqStarts = seqStartPos->getMutableData(false);
int* subSeqStarts = subSeqStartPos->getMutableData(false);
int seqNum = seqStartPos->getSize() - 1;
reorganizedSeqInfo.resize(seqNum, std::vector<int>());
int seqIdx = 0;
for (size_t i = 0; i < subSeqStartPos->getSize(); ++i) {
reorganizedSeqInfo[seqIdx].push_back(subSeqStarts[i]);
if (subSeqStarts[i] == seqStarts[seqIdx + 1]) {
seqIdx++;
if (seqIdx == seqNum) return;
reorganizedSeqInfo[seqIdx].push_back(subSeqStarts[i]);
}
}
}
} // namespace paddle
......@@ -317,6 +317,30 @@ struct Argument {
*/
void printValueString(std::ostream& stream,
const std::string& prefix = "") const;
/**
* @brief reorganizeSeqInfo will reorganize sequenceStartPositions and
* subSequenceStartPositions into a 2 dimensional arrary: reorganizedSeqInfo.
*
* @param seqStartPos: sequenceStartPositions of an Argument.
* @param subSeqStartPos: subSequenceStartPositions of an Argument.
* @param the reorganized sequence start position information.
*
* Examples:
* seqStartPos: [0, 4, 15, 20, 28]
* subSeqStartPos: [0, 3, 4, 5, 7, 10, 15, 20, 22, 23, 25, 28]
* reorganizedSeqInfo:
* [
* [0,3,4],
* [4,5,7,10,15],
* [15,20],
* [20,22,23,25,28]
* ]
*/
static void reorganizeSeqInfo(
const ICpuGpuVectorPtr seqStartPos,
const ICpuGpuVectorPtr subSeqStartPos,
std::vector<std::vector<int>>& reorganizedSeqInfo);
};
} // namespace paddle
......@@ -187,25 +187,16 @@ inline void throw_on_error(T e) {
__PADDLE_BINARY_COMPARE(__VAL0, __VAL1, <, >=, __VA_ARGS__)
#define PADDLE_ENFORCE_LE(__VAL0, __VAL1, ...) \
__PADDLE_BINARY_COMPARE(__VAL0, __VAL1, <=, >, __VA_ARGS__)
// if two values have different data types, choose a compatible type for them.
template <typename T1, typename T2>
struct CompatibleType {
static const bool t1_to_t2 = std::is_convertible<T1, T2>::value;
typedef typename std::conditional<t1_to_t2, T2, T1>::type type;
};
#define PADDLE_ENFORCE_NOT_NULL(__VAL, ...) \
PADDLE_ENFORCE(nullptr != (__VAL), #__VAL " should not be null\n%s", \
paddle::string::Sprintf("" __VA_ARGS__));
#define __PADDLE_BINARY_COMPARE(__VAL0, __VAL1, __CMP, __INV_CMP, ...) \
PADDLE_ENFORCE(__COMPATIBLE_TYPE(__VAL0, __VAL1, __VAL0) \
__CMP __COMPATIBLE_TYPE(__VAL0, __VAL1, __VAL1), \
PADDLE_ENFORCE(__VAL0 __CMP __VAL1, \
"enforce %s " #__CMP " %s failed, %s " #__INV_CMP " %s\n%s", \
#__VAL0, #__VAL1, std::to_string(__VAL0), \
std::to_string(__VAL1), \
paddle::string::Sprintf("" __VA_ARGS__));
#define __COMPATIBLE_TYPE(__VAL0, __VAL1, __VAL) \
typename paddle::platform::CompatibleType<decltype(__VAL0), \
decltype(__VAL1)>::type(__VAL)
} // namespace platform
} // namespace paddle
......@@ -9,8 +9,10 @@ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
#include "paddle/platform/enforce.h"
#include <memory>
#include "gtest/gtest.h"
#include "paddle/platform/enforce.h"
TEST(ENFORCE, OK) {
PADDLE_ENFORCE(true, "Enforce is ok %d now %f", 123, 0.345);
......@@ -196,3 +198,27 @@ TEST(ENFORCE_LT, FAIL) {
ASSERT_TRUE(in_catch);
}
TEST(ENFORCE_NOT_NULL, OK) {
int* a = new int;
PADDLE_ENFORCE_NOT_NULL(a);
delete a;
}
TEST(ENFORCE_NOT_NULL, FAIL) {
bool in_catch = false;
int* a{nullptr};
try {
PADDLE_ENFORCE_NOT_NULL(a);
} catch (paddle::platform::EnforceNotMet error) {
in_catch = true;
const std::string msg = "a should not be null";
const char* what = error.what();
for (size_t i = 0; i < msg.length(); ++i) {
ASSERT_EQ(what[i], msg[i]);
}
}
ASSERT_TRUE(in_catch);
}
......@@ -6,4 +6,5 @@ cc_library(paddle_pybind SHARED
add_op
mean_op
cross_entropy_op
recurrent_op)
recurrent_op
fill_zeros_like_op)
configure_file(submit_local.sh.in
submit_local.sh
paddle
@ONLY)
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/submit_local.sh DESTINATION bin
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/paddle DESTINATION bin
PERMISSIONS OWNER_EXECUTE OWNER_WRITE OWNER_READ
GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ
RENAME paddle)
GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ)
configure_file(tools/usage_stat/usage.sh
usage.sh
paddle_usage
@ONLY)
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/usage.sh DESTINATION opt/paddle/bin
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/paddle_usage DESTINATION opt/paddle/bin
PERMISSIONS OWNER_EXECUTE OWNER_WRITE OWNER_READ
GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ
RENAME paddle_usage)
GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ)
......@@ -33,6 +33,9 @@ Configuring cmake in /paddle/build ...
-DWITH_AVX=${WITH_AVX:-OFF}
-DWITH_GOLANG=${WITH_GOLANG:-OFF}
-DWITH_SWIG_PY=ON
-DWITH_C_API=${WITH_C_API:-OFF}
-DWITH_PYTHON=${WITH_PYTHON:-ON}
-DWITH_SWIG_PY=${WITH_SWIG_PY:-ON}
-DCUDNN_ROOT=/usr/
-DWITH_STYLE_CHECK=${WITH_STYLE_CHECK:-OFF}
-DWITH_TESTING=${WITH_TESTING:-OFF}
......@@ -49,7 +52,9 @@ cmake .. \
-DWITH_GPU=${WITH_GPU:-OFF} \
-DWITH_AVX=${WITH_AVX:-OFF} \
-DWITH_GOLANG=${WITH_GOLANG:-OFF} \
-DWITH_SWIG_PY=ON \
-DWITH_SWIG_PY=${WITH_SWIG_PY:-ON} \
-DWITH_C_API=${WITH_C_API:-OFF} \
-DWITH_PYTHON=${WITH_PYTHON:-ON} \
-DCUDNN_ROOT=/usr/ \
-DWITH_STYLE_CHECK=${WITH_STYLE_CHECK:-OFF} \
-DWITH_TESTING=${WITH_TESTING:-OFF} \
......
......@@ -20,4 +20,4 @@ cmake -DCMAKE_SYSTEM_NAME=Android \
-DWITH_SWIG_PY=OFF \
..
make -j `nproc`
make install
make install -j `nproc`
文件模式从 100644 更改为 100755
# Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserved
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from setuptools import setup, Extension
setup(name="py_paddle",
version="${PADDLE_VERSION}",
packages=['py_paddle'],
include_package_data=True,
package_data={'py_paddle':['*.py','_swig_paddle.so']},
install_requires = [
'nltk>=3.2.2',
# We use `numpy.flip` in `test_image.py`.
# `numpy.flip` is introduced in `1.12.0`
'numpy>=1.12.0', # The numpy is required.
'protobuf==${PROTOBUF_VERSION}' # The paddle protobuf version
],
url='http://www.paddlepaddle.org/',
license='Apache 2.0',
)
from paddle.trainer_config_helpers import *
settings(batch_size=128, learning_method=AdaGradOptimizer(), learning_rate=1e-4)
settings(batch_size=17, learning_method=AdaGradOptimizer(), learning_rate=1e-4)
file_list = 'trainer/tests/fake_file_list.list'
......@@ -12,7 +12,7 @@ define_py_data_sources2(
embedding = embedding_layer(
input=data_layer(
name="word_ids", size=65536),
name="word_ids", size=8191),
size=128,
param_attr=ParamAttr(sparse_update=True))
prediction = fc_layer(input=embedding, size=10, act=SoftmaxActivation())
......
......@@ -7,15 +7,15 @@ def init_hook(settings, is_train, **kwargs):
@provider(
input_types={'word_ids': integer_value(65536),
input_types={'word_ids': integer_value(8191),
'label': integer_value(10)},
min_pool_size=0,
init_hook=init_hook)
def process(settings, filename):
if settings.is_train:
data_size = 2**20
else:
data_size = 2**10
else:
data_size = 2**5
for _ in xrange(data_size):
yield random.randint(0, 65535), random.randint(0, 9)
yield random.randint(0, 8190), random.randint(0, 9)
......@@ -100,25 +100,25 @@ TEST(average_window, gpu) {
}
TEST(average_window, gpu2) {
FLAGS_num_passes = 100;
FLAGS_num_passes = 20;
trainerOnePassTest(configFile1, true, false, 2, 0.01);
FLAGS_num_passes = 1;
}
TEST(average_window, gpu4) {
FLAGS_num_passes = 100;
FLAGS_num_passes = 20;
trainerOnePassTest(configFile1, true, false, 4, 0.01);
FLAGS_num_passes = 1;
}
TEST(average_window_cpu, gpu2) {
FLAGS_num_passes = 100;
FLAGS_num_passes = 20;
trainerOnePassTest(configFile1, true, false, 2, 0.01, true);
FLAGS_num_passes = 1;
}
TEST(average_window_cpu, gpu4) {
FLAGS_num_passes = 100;
FLAGS_num_passes = 20;
trainerOnePassTest(configFile1, true, false, 4, 0.01, true);
FLAGS_num_passes = 1;
}
......
......@@ -39,7 +39,7 @@ add_custom_command(OUTPUT ${OUTPUT_DIR}/.timestamp
DEPENDS gen_proto_py copy_paddle_pybind framework_py_proto ${PY_FILES} ${external_project_dependencies} ${COPY_PADDLE_MASTER})
add_custom_target(paddle_python ALL DEPENDS
${OUTPUT_DIR}/.timestamp)
${OUTPUT_DIR}/.timestamp paddle_pserver_main paddle_trainer paddle_merge_model python_api_wheel)
set(PADDLE_PYTHON_PACKAGE_DIR ${CMAKE_CURRENT_BINARY_DIR}/dist/)
......
......@@ -2657,6 +2657,31 @@ class SubSequenceLayer(LayerBase):
self.create_bias_parameter(bias, size)
@config_layer('sub_nested_seq')
class SubNestedSequenceLayer(LayerBase):
def __init__(self, name, inputs, selected_indices, bias=False, **xargs):
if isinstance(inputs, list):
assert len(inputs) == 1, ('the first input of sub_nested_seq '
'layer is a single nested sequence.')
inputs = inputs[0]
if isinstance(selected_indices, list):
assert len(selected_indices) == 1, (
'the second input of '
'sub_nested_seq layer is a single layer which is a '
'set of selected indices.')
selected_indices = selected_indices[0]
super(SubNestedSequenceLayer, self).__init__(
name,
'sub_nested_seq',
0,
inputs=[inputs, selected_indices],
**xargs)
input_layer0 = self.get_input_layer(0)
size = input_layer0.size
self.set_layer_size(size)
@config_layer('out_prod')
class OuterProdLayer(LayerBase):
def __init__(self, name, inputs, device=None):
......
......@@ -129,6 +129,7 @@ __all__ = [
'prelu_layer',
'gated_unit_layer',
'crop_layer',
'sub_nested_seq_layer',
'clip_layer',
'slice_projection',
'kmax_sequence_score_layer',
......@@ -225,6 +226,7 @@ class LayerType(object):
PRELU = 'prelu'
CROP_LAYER = 'crop'
SUB_NESTED_SEQ = 'sub_nested_seq'
CLIP_LAYER = 'clip'
KMAX_SEQ_SCORE = 'kmax_seq_score'
......@@ -6091,6 +6093,53 @@ def crop_layer(input, offset, axis=2, shape=None, name=None, layer_attr=None):
size=l.config.size)
@wrap_name_default()
@layer_support()
def sub_nested_seq_layer(input, selected_indices, name=None):
"""
The sub_nested_seq_layer accepts two inputs: the first one is a nested
sequence; the second one is a set of selceted indices in the nested sequence.
Then sub_nest_seq_layer trims the first nested sequence input according
to the selected indices to form a new output. This layer is useful in
beam training.
The example usage is:
.. code-block:: python
sub_nest_seq = sub_nested_seq_layer(input=[data, selected_indices])
:param input: A nested sequence.
:type input: LayerOutput
:param selected_indices: a set of sequence indices in the nested sequence.
:type input: LayerOutput
:param name: name of this layer.
:type name: basestring
:return: LayerOutput object.
:rtype: LayerOutput
"""
assert isinstance(input, LayerOutput), (
'The first input of '
'sub_nested_seq_layer must be a Paddle layer.')
assert isinstance(selected_indices, LayerOutput), (
'The second input of '
'sub_nested_seq_layer must be a Paddle layer.')
l = Layer(
inputs=input.name,
selected_indices=selected_indices.name,
name=name,
type=LayerType.SUB_NESTED_SEQ)
return LayerOutput(
name=name,
layer_type=LayerType.SUB_NESTED_SEQ,
parents=input,
size=l.config.size)
@wrap_name_default("clip")
def clip_layer(input, min, max, name=None):
"""
......
......@@ -8,6 +8,6 @@ test_spp_layer test_bilinear_interp test_maxout test_bi_grumemory math_ops
test_seq_concat_reshape test_pad test_smooth_l1 test_multiplex_layer
test_prelu_layer test_row_conv test_detection_output_layer test_multibox_loss_layer
test_recursive_topology test_gated_unit_layer test_clip_layer test_row_l2_norm_layer
test_kmax_seq_socre_layer)
test_kmax_seq_socre_layer test_seq_select_layers)
export whole_configs=(test_split_datasource)
type: "nn"
layers {
name: "input_seq"
type: "data"
size: 300
active_type: ""
}
layers {
name: "input"
type: "data"
size: 5
active_type: ""
}
layers {
name: "__sub_nested_seq_layer_0__"
type: "sub_nested_seq"
size: 300
active_type: ""
inputs {
input_layer_name: "input_seq"
}
inputs {
input_layer_name: "input"
}
}
input_layer_names: "input_seq"
output_layer_names: "__sub_nested_seq_layer_0__"
sub_models {
name: "root"
layer_names: "input_seq"
layer_names: "input"
layer_names: "__sub_nested_seq_layer_0__"
input_layer_names: "input_seq"
output_layer_names: "__sub_nested_seq_layer_0__"
is_recurrent_layer_group: false
}
#!/usr/bin/env python
#coding=utf-8
from paddle.trainer_config_helpers import *
beam_size = 5
data = data_layer(name='input_seq', size=300)
selected_ids = data_layer(name='input', size=beam_size)
sub_nest_seq = sub_nested_seq_layer(input=data, selected_indices=selected_ids)
outputs(sub_nest_seq)
import paddle.v2.framework.core as core
from paddle.v2.framework.create_op_creation_methods import op_creations
from default_scope_funcs import new_var, find_var, get_cur_scope
__all__ = ['Network'] # Only expose Network
class NetworkFunctor(object):
"""
Network Op Creation Function. Used internally in this module.
It convert string input to Variable. If it is not created before, just
create in scope.
It is a functor object. means the instances are callable.
:param func: The op creation function which generated in Python.
:param net: The Network instance.
"""
def __init__(self, func, net):
self.func = func
self.net = net
def __call__(self, *args, **kwargs):
if len(args) != 0:
raise ValueError("Paddle must use keyword argument")
inputs = self.func.all_input_args
for ipt in inputs:
if ipt in kwargs:
var = kwargs[ipt]
if isinstance(var, basestring):
tmp = new_var(var)
self.net.var_names[tmp] = var
var = tmp
if not isinstance(var, core.Variable):
raise TypeError(
"Input of op creation must be string or variable")
kwargs[ipt] = self.net.var_names[var]
notemp_outputs = self.func.all_not_temp_output_args
for name in notemp_outputs:
if name not in kwargs:
kwargs[
name] = self.func.__name__ + "@OUT@%d" % core.unique_integer(
)
outputs = self.func.all_output_args
for opt in outputs:
if opt in kwargs:
var = kwargs[opt]
if isinstance(var, basestring):
tmp = new_var(var)
self.net.var_names[tmp] = var
var = tmp
if not isinstance(var, core.Variable):
raise TypeError(
"Output of op creation must be string or variable")
kwargs[opt] = self.net.var_names[var]
op = self.func(**kwargs)
self.net.net.add_op(op)
lst = [find_var(kwargs[opt]) for opt in notemp_outputs]
if len(lst) == 1:
return lst[0]
elif len(lst) == 0:
return None
else:
return lst
class Network(object):
"""
The network concept. It avoid user to manually create operator, create
variable, and combine them into a Net. Just use Network.xxx can create the
operator, create variables in default scope, and add them into `self.net`.
For example:
.. code-block: python
net = Network()
out = net.add_two(X="a", Y="b")
fc_out = net.fc(X="out", W="fc.w")
net.run(...)
"""
def __init__(self):
self.net = core.Net.create()
funcs = (func_name for func_name in dir(op_creations)
if not func_name.startswith("__"))
self.var_names = dict()
# TODO(yuyang18): This code can work, but do not generate a good
# docstring, try to give a better way generate function in runtime
# later.
for func_name in funcs:
func = getattr(op_creations, func_name)
impl = NetworkFunctor(func, self)
setattr(self, func_name, impl.__call__)
self.__complete_add_op__ = False
def infer_shape(self):
self.complete_add_op()
self.net.infer_shape(get_cur_scope())
def run(self, device_context):
self.complete_add_op()
self.net.run(get_cur_scope(), device_context)
def __str__(self):
return str(self.net)
def complete_add_op(self):
if not self.__complete_add_op__:
self.net.complete_add_op()
self.__complete_add_op__ = True
if __name__ == '__main__':
net = Network()
out = net.add_two(X="a", Y="b")
fc_out = net.fc(X=out, W="fc.w", b="fc.b", activation="softmax")
net.complete_add_op()
print net
......@@ -2,7 +2,6 @@ import paddle.v2.framework.core as core
import paddle.v2.framework.proto.op_proto_pb2 as op_proto_pb2
import paddle.v2.framework.proto.op_desc_pb2 as op_desc_pb2
import paddle.v2.framework.proto.attribute_pb2 as attribute_pb2
import cStringIO
def get_all_op_protos():
......@@ -146,64 +145,14 @@ class OpDescCreationMethod(object):
return False
def get_docstring_from_op_proto(op_proto):
"""
Generate docstring from a OpProto
:param op_proto: a OpProto instance.
:type op_proto: op_proto_pb2.OpProto
:return: docstring
"""
if not isinstance(op_proto, op_proto_pb2.OpProto):
raise TypeError("Input must be OpProto")
f = cStringIO.StringIO()
f.write(op_proto.comment)
f.write("\n")
def __append_param__(name, comment, type):
# Maybe replace the following line with template engine is better.
f.write(":param ")
f.write(name)
f.write(": ")
f.write(comment)
f.write("\n")
f.write(":type ")
f.write(name)
f.write(": ")
f.write(type)
f.write("\n")
for ipt in op_proto.inputs:
__append_param__(ipt.name, ipt.comment, "list | basestr"
if ipt.multiple else "basestr")
temp_var_prefix = \
"This is a temporary variable. It does not have to set by user. "
for opt in op_proto.outputs:
__append_param__(opt.name, opt.comment if not opt.temporary else
temp_var_prefix + opt.comment, "list | basestr"
if opt.multiple else "basestr")
for attr in op_proto.attrs:
attr_type = None
if attr.type == attribute_pb2.INT:
attr_type = "int"
elif attr.type == attribute_pb2.FLOAT:
attr_type = "float"
elif attr.type == attribute_pb2.STRING:
attr_type = "basestr"
elif attr.type == attribute_pb2.INTS:
attr_type = "list of int"
elif attr.type == attribute_pb2.FLOATS:
attr_type = "list of float"
elif attr.type == attribute_pb2.STRINGS:
attr_type = "list of basestr"
if attr_type is None:
raise RuntimeError("Not supported attribute type " + attr.type)
__append_param__(attr.name, attr.comment, attr_type)
return f.getvalue()
class OpInfo(object):
def __init__(self, name, method, inputs, outputs, attrs, no_temp_outputs):
self.name = name
self.method = method
self.inputs = inputs
self.outputs = outputs
self.attrs = attrs
self.no_temp_outputs = no_temp_outputs
def create_op_creation_method(op_proto):
......@@ -216,38 +165,57 @@ def create_op_creation_method(op_proto):
opdesc = method(*args, **kwargs)
return core.Operator.create(opdesc.SerializeToString())
__impl__.__doc__ = get_docstring_from_op_proto(op_proto)
__impl__.all_input_args = [var.name for var in op_proto.inputs]
__impl__.all_output_args = [var.name for var in op_proto.outputs]
__impl__.all_attr_args = [attr.name for attr in op_proto.attrs]
__impl__.all_not_temp_output_args = [
return OpInfo(
method=__impl__,
name=op_proto.type,
inputs=[var.name for var in op_proto.inputs],
outputs=[var.name for var in op_proto.outputs],
attrs=[attr.name for attr in op_proto.attrs],
no_temp_outputs=[
var.name for var in op_proto.outputs if not var.temporary
]
])
return __impl__
class OperatorFactory(object):
def __init__(self):
self.op_methods = dict()
for op_proto in get_all_op_protos():
method = create_op_creation_method(op_proto)
self.op_methods[method.name] = method
class OpCreationsHolder(object):
"""
A object will holds all op creation methods.
def __call__(self, *args, **kwargs):
if 'type' in kwargs:
if len(args) != 0:
raise ValueError("All Paddle argument should be key-word "
"argument except type")
t = kwargs.pop('type')
else:
if len(args) != 1:
raise ValueError("All Paddle argument should be key-word "
"argument except type")
t = args[0]
Use `op_creations.xxx_op` to access them.
"""
pass
return self.get_op_info(t).method(**kwargs)
def types(self):
return self.op_methods.keys()
op_creations = OpCreationsHolder()
def get_op_info(self, t):
if t not in self.op_methods:
raise ValueError("operator %s is not registered", t)
return self.op_methods.get(t)
def get_op_input_names(self, type):
return self.get_op_info(type).inputs
def __bootstrap__():
"""
Bootstrap function for this module. It will dynamic create all op creation
methods in runtime.
"""
for op_proto in get_all_op_protos():
func = create_op_creation_method(op_proto)
func.__name__ = str(op_proto.type)
setattr(op_creations, func.__name__, func)
def get_op_output_names(self, type):
return self.get_op_info(type).outputs
def get_op_attr_names(self, type):
return self.get_op_info(type).attrs
def get_op_no_temp_output_names(self, type):
return self.get_op_info(type).no_temp_outputs
__bootstrap__()
Operator = OperatorFactory() # Default global factory
......@@ -6,7 +6,6 @@ py_test(test_scope SRCS test_scope.py)
py_test(test_tensor SRCS test_tensor.py)
py_test(test_mul_op SRCS test_mul_op.py)
py_test(test_network SRCS test_network.py)
py_test(test_mean_op SRCS test_mean_op.py)
py_test(test_protobuf SRCS test_protobuf.py)
......@@ -14,10 +13,11 @@ py_test(test_protobuf SRCS test_protobuf.py)
py_test(test_add_two_op SRCS test_add_two_op.py)
py_test(test_sigmoid_op SRCS test_sigmoid_op.py)
py_test(test_softmax_op SRCS test_softmax_op.py)
py_test(test_fill_zeros_like_op SRCS test_fill_zeros_like_op.py)
py_test(gradient_checker SRCS gradient_checker.py)
py_test(test_rowwise_add_op SRCS test_rowwise_add_op.py)
py_test(test_default_scope_funcs SRCS test_default_scope_funcs.py)
py_test(test_op_creation_methods SRCS test_op_creation_methods.py)
py_test(test_operator SRCS test_operator.py)
import paddle.v2.framework.core as core
from paddle.v2.framework.create_op_creation_methods import op_creations
from paddle.v2.framework.op import Operator
import numpy
import unittest
......@@ -80,7 +80,7 @@ if __name__ == '__main__':
class GetNumericGradientTest(unittest.TestCase):
def test_add_op(self):
add_op = op_creations.add_two(X="X", Y="Y", Out="Z")
add_op = Operator('add_two', X="X", Y="Y", Out="Z")
x = numpy.random.random((10, 1)).astype("float32")
y = numpy.random.random((10, 1)).astype("float32")
......
import paddle.v2.framework.core as core
import unittest
import numpy
import paddle.v2.framework.create_op_creation_methods as creation
from paddle.v2.framework.op import Operator
class OpTestMeta(type):
......@@ -21,18 +21,14 @@ class OpTestMeta(type):
obj = super(OpTestMeta, cls).__new__(cls, name, bases, attrs)
def test_all(self):
func = getattr(creation.op_creations, self.type, None)
self.assertIsNotNone(func)
scope = core.Scope()
kwargs = dict()
places = []
places.append(core.CPUPlace())
if core.is_compile_gpu():
places = [core.CPUPlace()]
if core.is_compile_gpu() and core.Operator.support_gpu(self.type):
places.append(core.GPUPlace(0))
for place in places:
for in_name in func.all_input_args:
for in_name in Operator.get_op_input_names(self.type):
if hasattr(self, "inputs") and in_name in self.inputs:
kwargs[in_name] = in_name
var = scope.new_var(in_name).get_tensor()
......@@ -42,7 +38,7 @@ class OpTestMeta(type):
else:
kwargs[in_name] = "@EMPTY@"
for out_name in func.all_output_args:
for out_name in Operator.get_op_output_names(self.type):
if not hasattr(self, "outputs"):
raise ValueError(
"The test op must set self.outputs dict.")
......@@ -52,21 +48,23 @@ class OpTestMeta(type):
kwargs[out_name] = out_name
scope.new_var(out_name).get_tensor()
for attr_name in func.all_attr_args:
for attr_name in Operator.get_op_attr_names(self.type):
if hasattr(self, "attrs") and attr_name in self.attrs:
kwargs[attr_name] = self.attrs[attr_name]
op = func(**kwargs)
op = Operator(self.type, **kwargs)
op.infer_shape(scope)
ctx = core.DeviceContext.create(place)
op.run(scope, ctx)
for out_name in func.all_output_args:
for out_name in Operator.get_op_output_names(self.type):
actual = numpy.array(scope.find_var(out_name).get_tensor())
expect = self.outputs[out_name]
numpy.isclose(actual, expect)
self.assertTrue(
numpy.allclose(actual, expect),
"output name: " + out_name + "has diff")
obj.test_all = test_all
return obj
......@@ -2,7 +2,7 @@ import unittest
import numpy
import paddle.v2.framework.core as core
import paddle.v2.framework.create_op_creation_methods as creation
from paddle.v2.framework.op import Operator
from op_test_util import OpTestMeta
......@@ -21,7 +21,7 @@ class TestAddOp(unittest.TestCase):
class TestAddGradOp(unittest.TestCase):
def test_add_grad(self):
op = creation.op_creations.add_two(X="X", Y="Y", Out="Out")
op = Operator('add_two', X="X", Y="Y", Out="Out")
backward_op = core.Operator.backward(op, set())
self.assertEqual(backward_op.type(), "add_two_grad")
expected = '''Op(add_two_grad), inputs:(X, Y, Out, Out@GRAD), outputs:(X@GRAD, Y@GRAD).'''
......
import paddle.v2.framework.core as core
import unittest
import numpy
import paddle.v2.framework.create_op_creation_methods as creation
from paddle.v2.framework.op import Operator
class TestFc(unittest.TestCase):
......@@ -24,7 +24,7 @@ class TestFc(unittest.TestCase):
# Set a real numpy array here.
# x_tensor.set(numpy.array([]))
op = creation.op_creations.fc(X="X", Y="Y", W="W")
op = Operator("fc", X="X", Y="Y", W="W")
for out in op.outputs():
if scope.find_var(out) is None:
......
import unittest
from op_test_util import OpTestMeta
import numpy
class TestFillZerosLikeOp(unittest.TestCase):
__metaclass__ = OpTestMeta
def setUp(self):
self.type = "fill_zeros_like"
self.inputs = {'Src': numpy.random.random((219, 232)).astype("float32")}
self.outputs = {'Dst': numpy.zeros_like(self.inputs['Src'])}
if __name__ == '__main__':
unittest.main()
import paddle.v2.framework.core as core
from paddle.v2.framework.create_op_creation_methods import op_creations
from paddle.v2.framework.op import Operator
import unittest
class TestNet(unittest.TestCase):
def test_net_all(self):
net = core.Net.create()
op1 = op_creations.add_two(X="X", Y="Y", Out="Out")
op1 = Operator("add_two", X="X", Y="Y", Out="Out")
net.add_op(op1)
net2 = core.Net.create()
net2.add_op(op_creations.fc(X="X", W="w", Y="fc.out"))
net2.add_op(Operator("fc", X="X", W="w", Y="fc.out"))
net2.complete_add_op(True)
net.add_op(net2)
net.complete_add_op(True)
......
from paddle.v2.framework.network import Network
import paddle.v2.framework.core as core
import unittest
class TestNet(unittest.TestCase):
def test_net_all(self):
net = Network()
out = net.add_two(X="X", Y="Y")
fc_out = net.fc(X=out, W="w")
net.complete_add_op()
self.assertTrue(isinstance(fc_out, core.Variable))
self.assertEqual(
'''Op(plain_net), inputs:(@EMPTY@, X, Y, w), outputs:(@TEMP@fc@0, add_two@OUT@0, fc@OUT@1).
Op(add_two), inputs:(X, Y), outputs:(add_two@OUT@0).
Op(fc), inputs:(add_two@OUT@0, w, @EMPTY@), outputs:(fc@OUT@1, @TEMP@fc@0).
Op(mul), inputs:(add_two@OUT@0, w), outputs:(@TEMP@fc@0).
Op(sigmoid), inputs:(@TEMP@fc@0), outputs:(fc@OUT@1).
''', str(net))
net2 = Network()
tmp = net2.add_two(X="X", Y="Y")
self.assertTrue(isinstance(tmp, core.Variable))
net2.complete_add_op()
self.assertEqual(
'''Op(plain_net), inputs:(X, Y), outputs:(add_two@OUT@2).
Op(add_two), inputs:(X, Y), outputs:(add_two@OUT@2).
''', str(net2))
if __name__ == '__main__':
unittest.main()
import unittest
import paddle.v2.framework.create_op_creation_methods as creation
import paddle.v2.framework.op as op
import paddle.v2.framework.core as core
import paddle.v2.framework.proto.op_proto_pb2 as op_proto_pb2
import paddle.v2.framework.proto.op_desc_pb2 as op_desc_pb2
......@@ -8,7 +8,7 @@ import paddle.v2.framework.proto.attribute_pb2 as attribute_pb2
class TestGetAllProtos(unittest.TestCase):
def test_all(self):
all_protos = creation.get_all_op_protos()
all_protos = op.get_all_op_protos()
self.assertNotEqual(0, len(all_protos))
for each in all_protos:
......@@ -17,25 +17,25 @@ class TestGetAllProtos(unittest.TestCase):
class TestOpDescCreationMethod(unittest.TestCase):
def test_plain_input_output(self):
op = op_proto_pb2.OpProto()
op.type = "test"
ipt = op.inputs.add()
op_proto = op_proto_pb2.OpProto()
op_proto.type = "test"
ipt = op_proto.inputs.add()
ipt.name = "X"
ipt.comment = "not matter"
ipt = op.inputs.add()
ipt = op_proto.inputs.add()
ipt.name = "Y"
ipt.comment = "not matter"
opt = op.outputs.add()
opt = op_proto.outputs.add()
opt.name = "Z"
opt.comment = "not matter"
op.comment = "not matter"
op_proto.comment = "not matter"
self.assertTrue(op.IsInitialized())
self.assertTrue(op_proto.IsInitialized())
method = creation.OpDescCreationMethod(op)
method = op.OpDescCreationMethod(op_proto)
output = method(X="a", Y="b", Z="c")
expected = op_desc_pb2.OpDesc()
......@@ -45,29 +45,29 @@ class TestOpDescCreationMethod(unittest.TestCase):
self.assertEqual(expected, output)
def test_multiple_input_plain_output(self):
op = op_proto_pb2.OpProto()
op.type = "fc"
ipt = op.inputs.add()
op_proto = op_proto_pb2.OpProto()
op_proto.type = "fc"
ipt = op_proto.inputs.add()
ipt.name = "X"
ipt.comment = ""
ipt.multiple = True
ipt = op.inputs.add()
ipt = op_proto.inputs.add()
ipt.name = "W"
ipt.comment = ""
ipt.multiple = True
ipt = op.inputs.add()
ipt = op_proto.inputs.add()
ipt.name = "b"
ipt.comment = ""
out = op.outputs.add()
out = op_proto.outputs.add()
out.name = "Y"
out.comment = ""
op.comment = ""
self.assertTrue(op.IsInitialized())
method = creation.OpDescCreationMethod(op)
op_proto.comment = ""
self.assertTrue(op_proto.IsInitialized())
method = op.OpDescCreationMethod(op_proto)
generated1 = method(X="x", W="w", b="b", Y="y")
expected1 = op_desc_pb2.OpDesc()
......@@ -93,14 +93,14 @@ class TestOpDescCreationMethod(unittest.TestCase):
self.assertEqual(expected2, generated2)
def test_attrs(self):
op = op_proto_pb2.OpProto()
op.type = "test"
ipt = op.inputs.add()
op_proto = op_proto_pb2.OpProto()
op_proto.type = "test"
ipt = op_proto.inputs.add()
ipt.name = 'X'
ipt.comment = ""
def __add_attr__(name, type):
attr = op.attrs.add()
attr = op_proto.attrs.add()
attr.name = name
attr.comment = ""
attr.type = type
......@@ -112,10 +112,10 @@ class TestOpDescCreationMethod(unittest.TestCase):
__add_attr__("floats_attr", attribute_pb2.FLOATS)
__add_attr__("strings_attr", attribute_pb2.STRINGS)
op.comment = ""
self.assertTrue(op.IsInitialized())
op_proto.comment = ""
self.assertTrue(op_proto.IsInitialized())
method = creation.OpDescCreationMethod(op)
method = op.OpDescCreationMethod(op_proto)
generated = method(
X="a",
......@@ -162,23 +162,23 @@ class TestOpDescCreationMethod(unittest.TestCase):
self.assertEqual(expected, generated)
def test_input_temporary_output(self):
op = op_proto_pb2.OpProto()
op.type = "test"
out = op.outputs.add()
op_proto = op_proto_pb2.OpProto()
op_proto.type = "test"
out = op_proto.outputs.add()
out.name = "OUT"
out.comment = ""
out = op.outputs.add()
out = op_proto.outputs.add()
out.name = "TMP"
out.comment = ""
out.temporary = True
out = op.outputs.add()
out = op_proto.outputs.add()
out.name = "OUT2"
out.comment = ""
op.comment = ""
op_proto.comment = ""
method = creation.OpDescCreationMethod(op)
method = op.OpDescCreationMethod(op_proto)
generated = method(OUT="a", OUT2="b")
desc = op_desc_pb2.OpDesc()
desc.outputs.extend(["a", core.var_names.temp(), "b"])
......@@ -190,60 +190,9 @@ class TestOpDescCreationMethod(unittest.TestCase):
self.assertEqual(generated, desc)
class TestOpCreationDocStr(unittest.TestCase):
def test_all(self):
op = op_proto_pb2.OpProto()
op.type = "test"
op.comment = """Test Op.
This op is used for unit test, not a real op.
"""
a = op.inputs.add()
a.name = "a"
a.comment = "Input a for test op"
a.multiple = True
b = op.inputs.add()
b.name = "b"
b.comment = "Input b for test op"
self.assertTrue(op.IsInitialized())
o1 = op.outputs.add()
o1.name = "output"
o1.comment = "The output of test op"
o2 = op.outputs.add()
o2.name = "temp output"
o2.comment = "The temporary output of test op"
o2.temporary = True
test_str = op.attrs.add()
test_str.name = "str_attr"
test_str.type = attribute_pb2.STRING
test_str.comment = "A string attribute for test op"
actual = creation.get_docstring_from_op_proto(op)
expected_docstring = '''Test Op.
This op is used for unit test, not a real op.
:param a: Input a for test op
:type a: list | basestr
:param b: Input b for test op
:type b: basestr
:param output: The output of test op
:type output: basestr
:param temp output: This is a temporary variable. It does not have to set by user. The temporary output of test op
:type temp output: basestr
:param str_attr: A string attribute for test op
:type str_attr: basestr
'''
self.assertEqual(expected_docstring, actual)
class TestOpCreations(unittest.TestCase):
def test_all(self):
add_op = creation.op_creations.add_two(X="a", Y="b", Out="z")
add_op = op.Operator("add_two", X="a", Y="b", Out="z")
self.assertIsNotNone(add_op)
# Invoke C++ DebugString()
self.assertEqual('Op(add_two), inputs:(a, b), outputs:(z).',
......
......@@ -2,7 +2,7 @@ import unittest
import numpy as np
import paddle.v2.framework.core as core
import paddle.v2.framework.create_op_creation_methods as creation
from paddle.v2.framework.op import Operator
from op_test_util import OpTestMeta
......@@ -27,7 +27,7 @@ class TestSoftmaxOp(unittest.TestCase):
class TestSoftmaxGradOp(unittest.TestCase):
def test_softmax_grad(self):
op = creation.op_creations.softmax(X="X", Y="Y")
op = Operator('softmax', X="X", Y="Y")
backward_op = core.Operator.backward(op, set())
self.assertEqual(backward_op.type(), "softmax_grad")
expected = '''Op(softmax_grad), inputs:(X, Y, Y@GRAD), outputs:(X@GRAD).'''
......
from setuptools import setup
from setuptools import setup, Distribution
class BinaryDistribution(Distribution):
def has_ext_modules(foo):
return True
packages=['paddle',
'paddle.proto',
......@@ -11,7 +15,8 @@ packages=['paddle',
'paddle.v2.master',
'paddle.v2.plot',
'paddle.v2.framework',
'paddle.v2.framework.proto']
'paddle.v2.framework.proto',
'py_paddle']
setup_requires=["requests",
"numpy>=1.12",
......@@ -21,23 +26,33 @@ setup_requires=["requests",
"rarfile",
"scipy>=0.19.0",
"Pillow",
"nltk"]
"nltk>=3.2.2"]
if '${CMAKE_SYSTEM_PROCESSOR}' not in ['arm', 'armv7-a', 'aarch64']:
setup_requires+=["opencv-python"]
setup(name='paddle',
setup(name='paddlepaddle',
version='${PADDLE_VERSION}',
description='Parallel Distributed Deep Learning',
install_requires=setup_requires,
packages=packages,
package_data={'paddle.v2.master': ['libpaddle_master.so'],
'paddle.v2.framework': ['core.so']
package_data={
'paddle.v2.master': ['libpaddle_master.so'],
'paddle.v2.framework': ['core.so'],
'py_paddle':['*.py','_swig_paddle.so']
},
package_dir={
'': '${CMAKE_CURRENT_SOURCE_DIR}',
# The paddle.v2.framework.proto will be generated while compiling.
# So that package points to other directory.
'paddle.v2.framework.proto': '${PROJ_BINARY_ROOT}/paddle/framework'
'paddle.v2.framework.proto': '${PROJ_BINARY_ROOT}/paddle/framework',
'py_paddle': '${PROJ_ROOT}/paddle/py_paddle'
},
scripts=['${PROJ_BINARY_ROOT}/paddle/scripts/paddle'],
distclass=BinaryDistribution,
data_files=[('/usr/local/opt/paddle/bin',
['${PROJ_BINARY_ROOT}/paddle/scripts/paddle_usage',
'${PROJ_BINARY_ROOT}/paddle/trainer/paddle_trainer',
'${PROJ_BINARY_ROOT}/paddle/trainer/paddle_merge_model',
'${PROJ_BINARY_ROOT}/paddle/pserver/paddle_pserver_main'])]
)
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