common_graph_table.cc 57.0 KB
Newer Older
S
seemingwang 已提交
1 2 3 4 5 6 7 8 9 10 11 12 13 14
// Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//     http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.

15
#include "paddle/fluid/distributed/ps/table/common_graph_table.h"
S
seemingwang 已提交
16 17
#include <time.h>
#include <algorithm>
18
#include <chrono>
S
seemingwang 已提交
19 20 21
#include <set>
#include <sstream>
#include "paddle/fluid/distributed/common/utils.h"
22
#include "paddle/fluid/distributed/ps/table/graph/graph_node.h"
23
#include "paddle/fluid/framework/generator.h"
S
seemingwang 已提交
24 25
#include "paddle/fluid/string/printf.h"
#include "paddle/fluid/string/string_helper.h"
26

S
seemingwang 已提交
27 28 29
namespace paddle {
namespace distributed {

30
#ifdef PADDLE_WITH_HETERPS
31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46
int32_t GraphTable::Load_to_ssd(const std::string &path,
                                const std::string &param) {
  bool load_edge = (param[0] == 'e');
  bool load_node = (param[0] == 'n');
  if (load_edge) {
    bool reverse_edge = (param[1] == '<');
    std::string edge_type = param.substr(2);
    return this->load_edges_to_ssd(path, reverse_edge, edge_type);
  }
  if (load_node) {
    std::string node_type = param.substr(1);
    return this->load_nodes(path, node_type);
  }
  return 0;
}

47
paddle::framework::GpuPsCommGraph GraphTable::make_gpu_ps_graph(
48
    int idx, std::vector<int64_t> ids) {
49 50 51 52 53 54 55 56
  std::vector<std::vector<int64_t>> bags(task_pool_size_);
  for (auto x : ids) {
    int location = x % shard_num % task_pool_size_;
    bags[location].push_back(x);
  }
  std::vector<std::future<int>> tasks;
  std::vector<int64_t> edge_array[task_pool_size_];
  std::vector<paddle::framework::GpuPsGraphNode> node_array[task_pool_size_];
57
  for (size_t i = 0; i < bags.size(); i++) {
58 59 60
    if (bags[i].size() > 0) {
      tasks.push_back(_shards_task_pool[i]->enqueue([&, i, this]() -> int {
        paddle::framework::GpuPsGraphNode x;
61
        for (size_t j = 0; j < bags[i].size(); j++) {
62
          Node *v = find_node(0, idx, bags[i][j]);
63 64 65 66 67 68 69 70 71
          x.node_id = bags[i][j];
          if (v == NULL) {
            x.neighbor_size = 0;
            x.neighbor_offset = 0;
            node_array[i].push_back(x);
          } else {
            x.neighbor_size = v->get_neighbor_size();
            x.neighbor_offset = edge_array[i].size();
            node_array[i].push_back(x);
72
            for (size_t k = 0; k < x.neighbor_size; k++) {
73 74 75 76 77 78 79 80 81 82
              edge_array[i].push_back(v->get_neighbor_id(k));
            }
          }
        }
        return 0;
      }));
    }
  }
  for (int i = 0; i < (int)tasks.size(); i++) tasks[i].get();
  paddle::framework::GpuPsCommGraph res;
83
  unsigned int tot_len = 0;
84
  for (int i = 0; i < task_pool_size_; i++) {
85 86 87 88 89 90 91 92
    tot_len += edge_array[i].size();
  }
  // res.neighbor_size = tot_len;
  // res.node_size = ids.size();
  // res.neighbor_list = new int64_t[tot_len];
  // res.node_list = new paddle::framework::GpuPsGraphNode[ids.size()];
  res.init_on_cpu(tot_len, (unsigned int)ids.size());
  unsigned int offset = 0, ind = 0;
93 94 95 96 97
  for (int i = 0; i < task_pool_size_; i++) {
    for (int j = 0; j < (int)node_array[i].size(); j++) {
      res.node_list[ind] = node_array[i][j];
      res.node_list[ind++].neighbor_offset += offset;
    }
98
    for (size_t j = 0; j < edge_array[i].size(); j++) {
99 100 101 102 103 104
      res.neighbor_list[offset + j] = edge_array[i][j];
    }
    offset += edge_array[i].size();
  }
  return res;
}
105

106 107 108 109 110 111 112
int32_t GraphTable::add_node_to_ssd(int type_id, int idx, int64_t src_id,
                                    char *data, int len) {
  if (_db != NULL) {
    char ch[sizeof(int) * 2 + sizeof(int64_t)];
    memcpy(ch, &type_id, sizeof(int));
    memcpy(ch + sizeof(int), &idx, sizeof(int));
    memcpy(ch + sizeof(int) * 2, &src_id, sizeof(int64_t));
113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137
    std::string str;
    if (_db->get(src_id % shard_num % task_pool_size_, ch,
                 sizeof(int) * 2 + sizeof(int64_t), str) == 0) {
      int64_t *stored_data = ((int64_t *)str.c_str());
      int n = str.size() / sizeof(int64_t);
      char *new_data = new char[n * sizeof(int64_t) + len];
      memcpy(new_data, stored_data, n * sizeof(int64_t));
      memcpy(new_data + n * sizeof(int64_t), data, len);
      _db->put(src_id % shard_num % task_pool_size_, ch,
               sizeof(int) * 2 + sizeof(int64_t), (char *)new_data,
               n * sizeof(int64_t) + len);
      delete[] new_data;
    } else {
      _db->put(src_id % shard_num % task_pool_size_, ch,
               sizeof(int) * 2 + sizeof(int64_t), (char *)data, len);
    }
    _db->flush(src_id % shard_num % task_pool_size_);
    std::string x;
    // if (_db->get(src_id % shard_num % task_pool_size_, ch, sizeof(int64_t) +
    // 2 * sizeof(int), x) ==0){
    // VLOG(0)<<"put result";
    // for(int i = 0;i < x.size();i+=8){
    //   VLOG(0)<<"get an id "<<*((int64_t *)(x.c_str() + i));
    // }
    //}
138
  }
139 140 141
  return 0;
}
char *GraphTable::random_sample_neighbor_from_ssd(
142 143
    int idx, int64_t id, int sample_size,
    const std::shared_ptr<std::mt19937_64> rng, int &actual_size) {
144 145 146 147 148
  if (_db == NULL) {
    actual_size = 0;
    return NULL;
  }
  std::string str;
149 150 151 152
  char ch[sizeof(int) * 2 + sizeof(int64_t)];
  memset(ch, 0, sizeof(int));
  memcpy(ch + sizeof(int), &idx, sizeof(int));
  memcpy(ch + sizeof(int) * 2, &id, sizeof(int64_t));
153 154
  if (_db->get(id % shard_num % task_pool_size_, ch,
               sizeof(int) * 2 + sizeof(int64_t), str) == 0) {
155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173
    int64_t *data = ((int64_t *)str.c_str());
    int n = str.size() / sizeof(int64_t);
    std::unordered_map<int, int> m;
    // std::vector<int64_t> res;
    int sm_size = std::min(n, sample_size);
    actual_size = sm_size * Node::id_size;
    char *buff = new char[actual_size];
    for (int i = 0; i < sm_size; i++) {
      std::uniform_int_distribution<int> distrib(0, n - i - 1);
      int t = distrib(*rng);
      // int t = rand() % (n-i);
      int pos = 0;
      auto iter = m.find(t);
      if (iter != m.end()) {
        pos = iter->second;
      } else {
        pos = t;
      }
      auto iter2 = m.find(n - i - 1);
174

175 176 177 178 179 180 181 182 183 184 185
      int key2 = iter2 == m.end() ? n - i - 1 : iter2->second;
      m[t] = key2;
      m.erase(n - i - 1);
      memcpy(buff + i * Node::id_size, &data[pos], Node::id_size);
      // res.push_back(data[pos]);
    }
    return buff;
  }
  actual_size = 0;
  return NULL;
}
186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475

int64_t GraphTable::load_graph_to_memory_from_ssd(int idx,
                                                  std::vector<int64_t> &ids) {
  std::vector<std::vector<int64_t>> bags(task_pool_size_);
  for (auto x : ids) {
    int location = x % shard_num % task_pool_size_;
    bags[location].push_back(x);
  }
  std::vector<std::future<int>> tasks;
  std::vector<int64_t> count(task_pool_size_, 0);
  for (size_t i = 0; i < bags.size(); i++) {
    if (bags[i].size() > 0) {
      tasks.push_back(_shards_task_pool[i]->enqueue([&, i, idx, this]() -> int {

        char ch[sizeof(int) * 2 + sizeof(int64_t)];
        memset(ch, 0, sizeof(int));
        memcpy(ch + sizeof(int), &idx, sizeof(int));
        for (size_t k = 0; k < bags[i].size(); k++) {
          auto v = bags[i][k];
          memcpy(ch + sizeof(int) * 2, &v, sizeof(int64_t));
          std::string str;
          if (_db->get(i, ch, sizeof(int) * 2 + sizeof(int64_t), str) == 0) {
            count[i] += (int64_t)str.size();
            for (int j = 0; j < str.size(); j += sizeof(int64_t)) {
              int64_t id = *(int64_t *)(str.c_str() + j);
              add_comm_edge(idx, v, id);
            }
          }
        }
        return 0;
      }));
    }
  }

  for (int i = 0; i < (int)tasks.size(); i++) tasks[i].get();
  int64_t tot = 0;
  for (auto x : count) tot += x;
  return tot;
}

void GraphTable::make_partitions(int idx, int64_t byte_size, int device_len) {
  VLOG(2) << "start to make graph partitions , byte_size = " << byte_size
          << " total memory cost = " << total_memory_cost;
  if (total_memory_cost == 0) {
    VLOG(0) << "no edges are detected,make partitions exits";
    return;
  }
  const float a = 2.0, y = 1.25;
  int64_t gb_size_by_discount = byte_size * 0.8 * device_len;
  if (gb_size_by_discount <= 0) gb_size_by_discount = 1;
  int part_len = total_memory_cost / gb_size_by_discount;
  if (part_len == 0) part_len = 1;

  VLOG(2) << "part_len = " << part_len
          << " byte size = " << gb_size_by_discount;
  partitions[idx].clear();
  partitions[idx].resize(part_len);
  std::vector<int64_t> memory_remaining(part_len, gb_size_by_discount);
  std::vector<float> score(part_len, 0);
  std::unordered_map<int64_t, int> id_map;
  std::vector<rocksdb::Iterator *> iters;
  for (int i = 0; i < task_pool_size_; i++) {
    iters.push_back(_db->get_iterator(i));
    iters[i]->SeekToFirst();
  }
  int next = 0;
  while (iters.size()) {
    if (next >= iters.size()) {
      next = 0;
    }
    if (!iters[next]->Valid()) {
      iters.erase(iters.begin() + next);
      continue;
    }
    std::string key = iters[next]->key().ToString();
    int temp_idx = *(int *)(key.c_str() + sizeof(int));
    if (temp_idx != idx) {
      iters[next]->Next();
      next++;
      continue;
    }
    std::string value = iters[next]->value().ToString();
    std::int64_t i_key = *(int64_t *)(key.c_str() + 8);
    for (int i = 0; i < part_len; i++) {
      if (memory_remaining[i] < (int64_t)value.size()) {
        score[i] = -100000.0;
      } else {
        score[i] = 0;
      }
    }
    for (int j = 0; j < value.size(); j += sizeof(int64_t)) {
      int64_t v = *((int64_t *)(value.c_str() + j));
      int index = -1;
      if (id_map.find(v) != id_map.end()) {
        index = id_map[v];
        score[index]++;
      }
    }
    float base;
    int index = 0;
    for (int i = 0; i < part_len; i++) {
      base = gb_size_by_discount - memory_remaining[i];
      score[i] -= a * y * std::pow(1.0 * base, y - 1);
      if (score[i] > score[index]) index = i;
      VLOG(2) << "score" << i << " = " << score[i] << " memory left "
              << memory_remaining[i];
    }
    id_map[i_key] = index;
    partitions[idx][index].push_back(i_key);
    memory_remaining[index] -= (int64_t)value.size();
    iters[next]->Next();
    next++;
  }
  for (int i = 0; i < part_len; i++) {
    if (partitions[idx][i].size() == 0) {
      partitions[idx].erase(partitions[idx].begin() + i);
      i--;
      part_len--;
      continue;
    }
    VLOG(2) << " partition " << i << " size = " << partitions[idx][i].size();
    for (auto x : partitions[idx][i]) {
      VLOG(2) << "find a id " << x;
    }
  }
  next_partition = 0;
}

void GraphTable::clear_graph(int idx) {
  for (auto p : edge_shards[idx]) {
    delete p;
  }

  edge_shards[idx].clear();
  for (size_t i = 0; i < shard_num_per_server; i++) {
    edge_shards[idx].push_back(new GraphShard());
  }
}
int32_t GraphTable::load_next_partition(int idx) {
  if (next_partition >= partitions[idx].size()) {
    VLOG(0) << "partition iteration is done";
    return -1;
  }
  clear_graph(idx);
  load_graph_to_memory_from_ssd(idx, partitions[idx][next_partition]);
  next_partition++;
  return 0;
}
int32_t GraphTable::load_edges_to_ssd(const std::string &path,
                                      bool reverse_edge,
                                      const std::string &edge_type) {
  int idx = 0;
  if (edge_type == "") {
    VLOG(0) << "edge_type not specified, loading edges to " << id_to_edge[0]
            << " part";
  } else {
    if (edge_to_id.find(edge_type) == edge_to_id.end()) {
      VLOG(0) << "edge_type " << edge_type
              << " is not defined, nothing will be loaded";
      return 0;
    }
    idx = edge_to_id[edge_type];
  }
  total_memory_cost = 0;
  auto paths = paddle::string::split_string<std::string>(path, ";");
  int64_t count = 0;
  std::string sample_type = "random";
  bool is_weighted = false;
  int valid_count = 0;
  for (auto path : paths) {
    std::ifstream file(path);
    std::string line;
    while (std::getline(file, line)) {
      VLOG(0) << "get a line from file " << line;
      auto values = paddle::string::split_string<std::string>(line, "\t");
      count++;
      if (values.size() < 2) continue;
      auto src_id = std::stoll(values[0]);
      auto dist_ids = paddle::string::split_string<std::string>(values[1], ";");
      std::vector<int64_t> dist_data;
      for (auto x : dist_ids) {
        dist_data.push_back(std::stoll(x));
        total_memory_cost += sizeof(int64_t);
      }
      add_node_to_ssd(0, idx, src_id, (char *)dist_data.data(),
                      (int)(dist_data.size() * sizeof(int64_t)));
    }
  }
  VLOG(0) << "total memory cost = " << total_memory_cost << " bytes";
  return 0;
}

int32_t GraphTable::dump_edges_to_ssd(int idx) {
  VLOG(0) << "calling dump edges to ssd";
  const int64_t fixed_size = 10000;
  // std::vector<int64_t> edge_array[task_pool_size_];
  std::vector<std::unordered_map<int64_t, int>> count(task_pool_size_);
  std::vector<std::future<int64_t>> tasks;
  auto &shards = edge_shards[idx];
  for (size_t i = 0; i < shards.size(); ++i) {
    tasks.push_back(_shards_task_pool[i % task_pool_size_]->enqueue(
        [&, i, this]() -> int64_t {
          int64_t cost = 0;
          std::vector<Node *> &v = shards[i]->get_bucket();
          std::vector<int64_t> s;
          size_t ind = i % this->task_pool_size_;
          for (size_t j = 0; j < v.size(); j++) {
            for (int k = 0; k < v[j]->get_neighbor_size(); k++) {
              s.push_back(v[j]->get_neighbor_id(k));
            }
            cost += v[j]->get_neighbor_size() * sizeof(int64_t);
            add_node_to_ssd(0, idx, v[j]->get_id(), (char *)s.data(),
                            s.size() * sizeof(int64_t));
          }
          return cost;
        }));
  }
  for (size_t i = 0; i < tasks.size(); i++) total_memory_cost += tasks[i].get();
  return 0;
}
int32_t GraphTable::make_complementary_graph(int idx, int64_t byte_size) {
  VLOG(0) << "make_complementary_graph";
  const int64_t fixed_size = 10000;
  // std::vector<int64_t> edge_array[task_pool_size_];
  std::vector<std::unordered_map<int64_t, int>> count(task_pool_size_);
  std::vector<std::future<int>> tasks;
  auto &shards = edge_shards[idx];
  for (size_t i = 0; i < shards.size(); ++i) {
    tasks.push_back(
        _shards_task_pool[i % task_pool_size_]->enqueue([&, i, this]() -> int {
          std::vector<Node *> &v = shards[i]->get_bucket();
          size_t ind = i % this->task_pool_size_;
          for (size_t j = 0; j < v.size(); j++) {
            size_t location = v[j]->get_id();
            for (int k = 0; k < v[j]->get_neighbor_size(); k++) {
              count[ind][v[j]->get_neighbor_id(k)]++;
            }
          }
          return 0;
        }));
  }

  std::unordered_map<int64_t, int> final_count;
  std::map<int, std::vector<int64_t>> count_to_id;
  std::vector<int64_t> buffer;
  for (auto p : edge_shards[idx]) {
    delete p;
  }

  edge_shards[idx].clear();
  for (size_t i = 0; i < shard_num_per_server; i++) {
    edge_shards[idx].push_back(new GraphShard());
  }
  for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();
  for (int i = 0; i < task_pool_size_; i++) {
    for (auto &p : count[i]) {
      final_count[p.first] = final_count[p.first] + p.second;
    }
    count[i].clear();
  }
  for (auto &p : final_count) {
    count_to_id[p.second].push_back(p.first);
    VLOG(2) << p.first << " appear " << p.second << " times";
  }
  // std::map<int,std::vector<int64_t>>::iterator iter= count_to_id.rbegin();
  auto iter = count_to_id.rbegin();
  while (iter != count_to_id.rend() && byte_size > 0) {
    for (auto x : iter->second) {
      buffer.push_back(x);
      if (buffer.size() >= fixed_size) {
        int64_t res = load_graph_to_memory_from_ssd(idx, buffer);
        byte_size -= res;
      }
      if (byte_size <= 0) break;
    }
    iter++;
  }
  if (byte_size > 0 && buffer.size() > 0) {
    int64_t res = load_graph_to_memory_from_ssd(idx, buffer);
    byte_size -= res;
  }
  std::string sample_type = "random";
  for (auto &shard : edge_shards[idx]) {
    auto bucket = shard->get_bucket();
    for (size_t i = 0; i < bucket.size(); i++) {
      bucket[i]->build_sampler(sample_type);
    }
  }
  return 0;
}
476
#endif
477

478
/*
479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522
int CompleteGraphSampler::run_graph_sampling() {
  pthread_rwlock_t *rw_lock = graph_table->rw_lock.get();
  pthread_rwlock_rdlock(rw_lock);
  std::cout << "in graph sampling" << std::endl;
  sample_nodes.clear();
  sample_neighbors.clear();
  sample_res.clear();
  sample_nodes.resize(gpu_num);
  sample_neighbors.resize(gpu_num);
  sample_res.resize(gpu_num);
  std::vector<std::vector<std::vector<paddle::framework::GpuPsGraphNode>>>
      sample_nodes_ex(graph_table->task_pool_size_);
  std::vector<std::vector<std::vector<int64_t>>> sample_neighbors_ex(
      graph_table->task_pool_size_);
  for (int i = 0; i < graph_table->task_pool_size_; i++) {
    sample_nodes_ex[i].resize(gpu_num);
    sample_neighbors_ex[i].resize(gpu_num);
  }
  std::vector<std::future<int>> tasks;
  for (size_t i = 0; i < graph_table->shards.size(); ++i) {
    tasks.push_back(
        graph_table->_shards_task_pool[i % graph_table->task_pool_size_]
            ->enqueue([&, i, this]() -> int {
              if (this->status == GraphSamplerStatus::terminating) return 0;
              paddle::framework::GpuPsGraphNode node;
              std::vector<Node *> &v =
                  this->graph_table->shards[i]->get_bucket();
              size_t ind = i % this->graph_table->task_pool_size_;
              for (size_t j = 0; j < v.size(); j++) {
                size_t location = v[j]->get_id() % this->gpu_num;
                node.node_id = v[j]->get_id();
                node.neighbor_size = v[j]->get_neighbor_size();
                node.neighbor_offset =
                    (int)sample_neighbors_ex[ind][location].size();
                sample_nodes_ex[ind][location].emplace_back(node);
                for (int k = 0; k < node.neighbor_size; k++)
                  sample_neighbors_ex[ind][location].push_back(
                      v[j]->get_neighbor_id(k));
              }
              return 0;
            }));
  }
  for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();
  tasks.clear();
523
  for (int i = 0; i < gpu_num; i++) {
524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550
    tasks.push_back(
        graph_table->_shards_task_pool[i % graph_table->task_pool_size_]
            ->enqueue([&, i, this]() -> int {
              if (this->status == GraphSamplerStatus::terminating) return 0;
              int total_offset = 0;
              size_t ind = i % this->graph_table->task_pool_size_;
              for (int j = 0; j < this->graph_table->task_pool_size_; j++) {
                for (size_t k = 0; k < sample_nodes_ex[j][ind].size(); k++) {
                  sample_nodes[ind].push_back(sample_nodes_ex[j][ind][k]);
                  sample_nodes[ind].back().neighbor_offset += total_offset;
                }
                size_t neighbor_size = sample_neighbors_ex[j][ind].size();
                total_offset += neighbor_size;
                for (size_t k = 0; k < neighbor_size; k++) {
                  sample_neighbors[ind].push_back(
                      sample_neighbors_ex[j][ind][k]);
                }
              }
              return 0;
            }));
  }
  for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();

  if (this->status == GraphSamplerStatus::terminating) {
    pthread_rwlock_unlock(rw_lock);
    return 0;
  }
551
  for (int i = 0; i < gpu_num; i++) {
552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585
    sample_res[i].node_list = sample_nodes[i].data();
    sample_res[i].neighbor_list = sample_neighbors[i].data();
    sample_res[i].node_size = sample_nodes[i].size();
    sample_res[i].neighbor_size = sample_neighbors[i].size();
  }
  pthread_rwlock_unlock(rw_lock);
  if (this->status == GraphSamplerStatus::terminating) {
    return 0;
  }
  callback(sample_res);
  return 0;
}
void CompleteGraphSampler::init(size_t gpu_num, GraphTable *graph_table,
                                std::vector<std::string> args) {
  this->gpu_num = gpu_num;
  this->graph_table = graph_table;
}

int BasicBfsGraphSampler::run_graph_sampling() {
  pthread_rwlock_t *rw_lock = graph_table->rw_lock.get();
  pthread_rwlock_rdlock(rw_lock);
  while (rounds > 0 && status == GraphSamplerStatus::running) {
    for (size_t i = 0; i < sample_neighbors_map.size(); i++) {
      sample_neighbors_map[i].clear();
    }
    sample_neighbors_map.clear();
    std::vector<int> nodes_left(graph_table->shards.size(),
                                node_num_for_each_shard);
    std::promise<int> prom;
    std::future<int> fut = prom.get_future();
    sample_neighbors_map.resize(graph_table->task_pool_size_);
    int task_size = 0;
    std::vector<std::future<int>> tasks;
    int init_size = 0;
586 587
    //__sync_fetch_and_add
    std::function<int(int, int64_t)> bfs = [&, this](int i, int id) -> int {
588 589 590 591 592 593 594 595 596 597 598 599 600
      if (this->status == GraphSamplerStatus::terminating) {
        int task_left = __sync_sub_and_fetch(&task_size, 1);
        if (task_left == 0) {
          prom.set_value(0);
        }
        return 0;
      }
      size_t ind = i % this->graph_table->task_pool_size_;
      if (nodes_left[i] > 0) {
        auto iter = sample_neighbors_map[ind].find(id);
        if (iter == sample_neighbors_map[ind].end()) {
          Node *node = graph_table->shards[i]->find_node(id);
          if (node != NULL) {
601 602 603
            nodes_left[i]--;
            sample_neighbors_map[ind][id] = std::vector<int64_t>();
            iter = sample_neighbors_map[ind].find(id);
604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627
            size_t edge_fetch_size =
                std::min((size_t) this->edge_num_for_each_node,
                         node->get_neighbor_size());
            for (size_t k = 0; k < edge_fetch_size; k++) {
              int64_t neighbor_id = node->get_neighbor_id(k);
              int node_location = neighbor_id % this->graph_table->shard_num %
                                  this->graph_table->task_pool_size_;
              __sync_add_and_fetch(&task_size, 1);
              graph_table->_shards_task_pool[node_location]->enqueue(
                  bfs, neighbor_id % this->graph_table->shard_num, neighbor_id);
              iter->second.push_back(neighbor_id);
            }
          }
        }
      }
      int task_left = __sync_sub_and_fetch(&task_size, 1);
      if (task_left == 0) {
        prom.set_value(0);
      }
      return 0;
    };
    for (size_t i = 0; i < graph_table->shards.size(); ++i) {
      std::vector<Node *> &v = graph_table->shards[i]->get_bucket();
      if (v.size() > 0) {
628 629 630 631 632 633 634 635
        int search_size = std::min(init_search_size, (int)v.size());
        for (int k = 0; k < search_size; k++) {
          init_size++;
          __sync_add_and_fetch(&task_size, 1);
          int64_t id = v[k]->get_id();
          graph_table->_shards_task_pool[i % graph_table->task_pool_size_]
              ->enqueue(bfs, i, id);
        }
636 637 638 639 640 641 642 643 644 645
      }  // if
    }
    if (init_size == 0) {
      prom.set_value(0);
    }
    fut.get();
    if (this->status == GraphSamplerStatus::terminating) {
      pthread_rwlock_unlock(rw_lock);
      return 0;
    }
646
    VLOG(0) << "BasicBfsGraphSampler finishes the graph searching task";
647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693
    sample_nodes.clear();
    sample_neighbors.clear();
    sample_res.clear();
    sample_nodes.resize(gpu_num);
    sample_neighbors.resize(gpu_num);
    sample_res.resize(gpu_num);
    std::vector<std::vector<std::vector<paddle::framework::GpuPsGraphNode>>>
        sample_nodes_ex(graph_table->task_pool_size_);
    std::vector<std::vector<std::vector<int64_t>>> sample_neighbors_ex(
        graph_table->task_pool_size_);
    for (int i = 0; i < graph_table->task_pool_size_; i++) {
      sample_nodes_ex[i].resize(gpu_num);
      sample_neighbors_ex[i].resize(gpu_num);
    }
    tasks.clear();
    for (size_t i = 0; i < (size_t)graph_table->task_pool_size_; ++i) {
      tasks.push_back(
          graph_table->_shards_task_pool[i]->enqueue([&, i, this]() -> int {
            if (this->status == GraphSamplerStatus::terminating) {
              return 0;
            }
            paddle::framework::GpuPsGraphNode node;
            auto iter = sample_neighbors_map[i].begin();
            size_t ind = i;
            for (; iter != sample_neighbors_map[i].end(); iter++) {
              size_t location = iter->first % this->gpu_num;
              node.node_id = iter->first;
              node.neighbor_size = iter->second.size();
              node.neighbor_offset =
                  (int)sample_neighbors_ex[ind][location].size();
              sample_nodes_ex[ind][location].emplace_back(node);
              for (auto k : iter->second)
                sample_neighbors_ex[ind][location].push_back(k);
            }
            return 0;
          }));
    }

    for (size_t i = 0; i < tasks.size(); i++) {
      tasks[i].get();
      sample_neighbors_map[i].clear();
    }
    tasks.clear();
    if (this->status == GraphSamplerStatus::terminating) {
      pthread_rwlock_unlock(rw_lock);
      return 0;
    }
694
    for (size_t i = 0; i < (size_t)gpu_num; i++) {
695 696 697 698 699 700 701 702 703
      tasks.push_back(
          graph_table->_shards_task_pool[i % graph_table->task_pool_size_]
              ->enqueue([&, i, this]() -> int {
                if (this->status == GraphSamplerStatus::terminating) {
                  pthread_rwlock_unlock(rw_lock);
                  return 0;
                }
                int total_offset = 0;
                for (int j = 0; j < this->graph_table->task_pool_size_; j++) {
704 705
                  for (size_t k = 0; k < sample_nodes_ex[j][i].size(); k++) {
                    sample_nodes[i].push_back(sample_nodes_ex[j][i][k]);
706 707
                    sample_nodes[i].back().neighbor_offset += total_offset;
                  }
708
                  size_t neighbor_size = sample_neighbors_ex[j][i].size();
709 710
                  total_offset += neighbor_size;
                  for (size_t k = 0; k < neighbor_size; k++) {
711
                    sample_neighbors[i].push_back(sample_neighbors_ex[j][i][k]);
712 713 714 715 716 717 718 719 720 721
                  }
                }
                return 0;
              }));
    }
    for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();
    if (this->status == GraphSamplerStatus::terminating) {
      pthread_rwlock_unlock(rw_lock);
      return 0;
    }
722
    for (int i = 0; i < gpu_num; i++) {
723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739
      sample_res[i].node_list = sample_nodes[i].data();
      sample_res[i].neighbor_list = sample_neighbors[i].data();
      sample_res[i].node_size = sample_nodes[i].size();
      sample_res[i].neighbor_size = sample_neighbors[i].size();
    }
    pthread_rwlock_unlock(rw_lock);
    if (this->status == GraphSamplerStatus::terminating) {
      return 0;
    }
    callback(sample_res);
    rounds--;
    if (rounds > 0) {
      for (int i = 0;
           i < interval && this->status == GraphSamplerStatus::running; i++) {
        std::this_thread::sleep_for(std::chrono::seconds(1));
      }
    }
740
    VLOG(0)<<"bfs returning";
741 742 743 744 745 746 747
  }
  return 0;
}
void BasicBfsGraphSampler::init(size_t gpu_num, GraphTable *graph_table,
                                std::vector<std::string> args) {
  this->gpu_num = gpu_num;
  this->graph_table = graph_table;
748 749 750 751 752
  init_search_size = args.size() > 0 ? std::stoi(args[0]) : 10;
  node_num_for_each_shard = args.size() > 1 ? std::stoi(args[1]) : 10;
  edge_num_for_each_node = args.size() > 2 ? std::stoi(args[2]) : 10;
  rounds = args.size() > 3 ? std::stoi(args[3]) : 1;
  interval = args.size() > 4 ? std::stoi(args[4]) : 60;
753 754 755
}

#endif
756
*/
S
seemingwang 已提交
757 758 759 760 761 762 763 764 765 766 767
std::vector<Node *> GraphShard::get_batch(int start, int end, int step) {
  if (start < 0) start = 0;
  std::vector<Node *> res;
  for (int pos = start; pos < std::min(end, (int)bucket.size()); pos += step) {
    res.push_back(bucket[pos]);
  }
  return res;
}

size_t GraphShard::get_size() { return bucket.size(); }

768
int32_t GraphTable::add_comm_edge(int idx, int64_t src_id, int64_t dst_id) {
769 770 771 772 773 774
  size_t src_shard_id = src_id % shard_num;

  if (src_shard_id >= shard_end || src_shard_id < shard_start) {
    return -1;
  }
  size_t index = src_shard_id - shard_start;
775 776
  edge_shards[idx][index]->add_graph_node(src_id)->build_edges(false);
  edge_shards[idx][index]->add_neighbor(src_id, dst_id, 1.0);
777 778
  return 0;
}
779
int32_t GraphTable::add_graph_node(int idx, std::vector<int64_t> &id_list,
780
                                   std::vector<bool> &is_weight_list) {
781
  auto &shards = edge_shards[idx];
782
  size_t node_size = id_list.size();
783
  std::vector<std::vector<std::pair<int64_t, bool>>> batch(task_pool_size_);
784 785 786 787 788 789 790 791 792 793 794
  for (size_t i = 0; i < node_size; i++) {
    size_t shard_id = id_list[i] % shard_num;
    if (shard_id >= shard_end || shard_id < shard_start) {
      continue;
    }
    batch[get_thread_pool_index(id_list[i])].push_back(
        {id_list[i], i < is_weight_list.size() ? is_weight_list[i] : false});
  }
  std::vector<std::future<int>> tasks;
  for (size_t i = 0; i < batch.size(); ++i) {
    if (!batch[i].size()) continue;
795 796 797 798 799 800 801 802
    tasks.push_back(
        _shards_task_pool[i]->enqueue([&shards, &batch, i, this]() -> int {
          for (auto &p : batch[i]) {
            size_t index = p.first % this->shard_num - this->shard_start;
            shards[index]->add_graph_node(p.first)->build_edges(p.second);
          }
          return 0;
        }));
803 804 805 806 807
  }
  for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();
  return 0;
}

808
int32_t GraphTable::remove_graph_node(int idx, std::vector<int64_t> &id_list) {
809
  size_t node_size = id_list.size();
810
  std::vector<std::vector<int64_t>> batch(task_pool_size_);
811 812 813 814 815
  for (size_t i = 0; i < node_size; i++) {
    size_t shard_id = id_list[i] % shard_num;
    if (shard_id >= shard_end || shard_id < shard_start) continue;
    batch[get_thread_pool_index(id_list[i])].push_back(id_list[i]);
  }
816
  auto &shards = edge_shards[idx];
817 818 819
  std::vector<std::future<int>> tasks;
  for (size_t i = 0; i < batch.size(); ++i) {
    if (!batch[i].size()) continue;
820 821 822 823 824 825 826 827
    tasks.push_back(
        _shards_task_pool[i]->enqueue([&shards, &batch, i, this]() -> int {
          for (auto &p : batch[i]) {
            size_t index = p % this->shard_num - this->shard_start;
            shards[index]->delete_node(p);
          }
          return 0;
        }));
828 829 830 831 832 833 834 835 836 837 838 839 840 841
  }
  for (size_t i = 0; i < tasks.size(); i++) tasks[i].get();
  return 0;
}

void GraphShard::clear() {
  for (size_t i = 0; i < bucket.size(); i++) {
    delete bucket[i];
  }
  bucket.clear();
  node_location.clear();
}

GraphShard::~GraphShard() { clear(); }
842

843
void GraphShard::delete_node(int64_t id) {
844 845 846 847 848 849 850 851 852 853 854
  auto iter = node_location.find(id);
  if (iter == node_location.end()) return;
  int pos = iter->second;
  delete bucket[pos];
  if (pos != (int)bucket.size() - 1) {
    bucket[pos] = bucket.back();
    node_location[bucket.back()->get_id()] = pos;
  }
  node_location.erase(id);
  bucket.pop_back();
}
855
GraphNode *GraphShard::add_graph_node(int64_t id) {
S
seemingwang 已提交
856 857 858 859 860 861 862
  if (node_location.find(id) == node_location.end()) {
    node_location[id] = bucket.size();
    bucket.push_back(new GraphNode(id));
  }
  return (GraphNode *)bucket[node_location[id]];
}

863 864 865 866 867 868 869 870
GraphNode *GraphShard::add_graph_node(Node *node) {
  auto id = node->get_id();
  if (node_location.find(id) == node_location.end()) {
    node_location[id] = bucket.size();
    bucket.push_back(node);
  }
  return (GraphNode *)bucket[node_location[id]];
}
871
FeatureNode *GraphShard::add_feature_node(int64_t id) {
S
seemingwang 已提交
872 873 874 875 876 877 878
  if (node_location.find(id) == node_location.end()) {
    node_location[id] = bucket.size();
    bucket.push_back(new FeatureNode(id));
  }
  return (FeatureNode *)bucket[node_location[id]];
}

879
void GraphShard::add_neighbor(int64_t id, int64_t dst_id, float weight) {
S
seemingwang 已提交
880 881 882
  find_node(id)->add_edge(dst_id, weight);
}

883
Node *GraphShard::find_node(int64_t id) {
S
seemingwang 已提交
884 885 886 887
  auto iter = node_location.find(id);
  return iter == node_location.end() ? nullptr : bucket[iter->second];
}

888
GraphTable::~GraphTable() {
889 890 891 892 893
  for (int i = 0; i < (int)edge_shards.size(); i++) {
    for (auto p : edge_shards[i]) {
      delete p;
    }
    edge_shards[i].clear();
894 895
  }

896 897 898 899 900 901
  for (int i = 0; i < (int)feature_shards.size(); i++) {
    for (auto p : feature_shards[i]) {
      delete p;
    }
    feature_shards[i].clear();
  }
902 903
}

Z
zhaocaibei123 已提交
904
int32_t GraphTable::Load(const std::string &path, const std::string &param) {
S
seemingwang 已提交
905 906 907 908
  bool load_edge = (param[0] == 'e');
  bool load_node = (param[0] == 'n');
  if (load_edge) {
    bool reverse_edge = (param[1] == '<');
909 910
    std::string edge_type = param.substr(2);
    return this->load_edges(path, reverse_edge, edge_type);
S
seemingwang 已提交
911 912 913 914 915 916 917 918 919
  }
  if (load_node) {
    std::string node_type = param.substr(1);
    return this->load_nodes(path, node_type);
  }
  return 0;
}

int32_t GraphTable::get_nodes_ids_by_ranges(
920 921
    int type_id, int idx, std::vector<std::pair<int, int>> ranges,
    std::vector<int64_t> &res) {
S
seemingwang 已提交
922 923
  int start = 0, end, index = 0, total_size = 0;
  res.clear();
924
  auto &shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
925
  std::vector<std::future<std::vector<int64_t>>> tasks;
926
  for (size_t i = 0; i < shards.size() && index < (int)ranges.size(); i++) {
927
    end = total_size + shards[i]->get_size();
S
seemingwang 已提交
928
    start = total_size;
929
    while (start < end && index < (int)ranges.size()) {
S
seemingwang 已提交
930 931 932 933 934 935 936 937 938 939 940
      if (ranges[index].second <= start)
        index++;
      else if (ranges[index].first >= end) {
        break;
      } else {
        int first = std::max(ranges[index].first, start);
        int second = std::min(ranges[index].second, end);
        start = second;
        first -= total_size;
        second -= total_size;
        tasks.push_back(_shards_task_pool[i % task_pool_size_]->enqueue(
941
            [&shards, this, first, second, i]() -> std::vector<int64_t> {
942
              return shards[i]->get_ids_by_range(first, second);
S
seemingwang 已提交
943 944 945
            }));
      }
    }
946
    total_size += shards[i]->get_size();
S
seemingwang 已提交
947
  }
948
  for (size_t i = 0; i < tasks.size(); i++) {
S
seemingwang 已提交
949 950 951 952 953 954 955 956 957 958 959 960 961
    auto vec = tasks[i].get();
    for (auto &id : vec) {
      res.push_back(id);
      std::swap(res[rand() % res.size()], res[(int)res.size() - 1]);
    }
  }
  return 0;
}

int32_t GraphTable::load_nodes(const std::string &path, std::string node_type) {
  auto paths = paddle::string::split_string<std::string>(path, ";");
  int64_t count = 0;
  int64_t valid_count = 0;
962 963 964 965 966 967 968 969 970 971 972 973
  int idx = 0;
  if (node_type == "") {
    VLOG(0) << "node_type not specified, loading edges to " << id_to_feature[0]
            << " part";
  } else {
    if (feature_to_id.find(node_type) == feature_to_id.end()) {
      VLOG(0) << "node_type " << node_type
              << " is not defined, nothing will be loaded";
      return 0;
    }
    idx = feature_to_id[node_type];
  }
S
seemingwang 已提交
974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990
  for (auto path : paths) {
    std::ifstream file(path);
    std::string line;
    while (std::getline(file, line)) {
      auto values = paddle::string::split_string<std::string>(line, "\t");
      if (values.size() < 2) continue;
      auto id = std::stoull(values[1]);

      size_t shard_id = id % shard_num;
      if (shard_id >= shard_end || shard_id < shard_start) {
        VLOG(4) << "will not load " << id << " from " << path
                << ", please check id distribution";
        continue;
      }

      if (count % 1000000 == 0) {
        VLOG(0) << count << " nodes are loaded from filepath";
991
        VLOG(0) << line;
S
seemingwang 已提交
992
      }
993
      count++;
S
seemingwang 已提交
994 995 996 997 998 999 1000 1001

      std::string nt = values[0];
      if (nt != node_type) {
        continue;
      }

      size_t index = shard_id - shard_start;

1002 1003 1004
      // auto node = shards[index]->add_feature_node(id);
      auto node = feature_shards[idx][index]->add_feature_node(id);
      node->set_feature_size(feat_name[idx].size());
S
seemingwang 已提交
1005 1006

      for (size_t slice = 2; slice < values.size(); slice++) {
1007
        auto feat = this->parse_feature(idx, values[slice]);
S
seemingwang 已提交
1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023
        if (feat.first >= 0) {
          node->set_feature(feat.first, feat.second);
        } else {
          VLOG(4) << "Node feature:  " << values[slice]
                  << " not in feature_map.";
        }
      }
      valid_count++;
    }
  }

  VLOG(0) << valid_count << "/" << count << " nodes in type " << node_type
          << " are loaded successfully in " << path;
  return 0;
}

1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034
int32_t GraphTable::build_sampler(int idx, std::string sample_type) {
  for (auto &shard : edge_shards[idx]) {
    auto bucket = shard->get_bucket();
    for (size_t i = 0; i < bucket.size(); i++) {
      bucket[i]->build_sampler(sample_type);
    }
  }
  return 0;
}
int32_t GraphTable::load_edges(const std::string &path, bool reverse_edge,
                               const std::string &edge_type) {
1035 1036 1037 1038 1039
#ifdef PADDLE_WITH_HETERPS
  // if (gpups_mode) pthread_rwlock_rdlock(rw_lock.get());
  if (search_level == 2) total_memory_cost = 0;
  const int64_t fixed_load_edges = 1000000;
#endif
1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051
  int idx = 0;
  if (edge_type == "") {
    VLOG(0) << "edge_type not specified, loading edges to " << id_to_edge[0]
            << " part";
  } else {
    if (edge_to_id.find(edge_type) == edge_to_id.end()) {
      VLOG(0) << "edge_type " << edge_type
              << " is not defined, nothing will be loaded";
      return 0;
    }
    idx = edge_to_id[edge_type];
  }
1052

S
seemingwang 已提交
1053
  auto paths = paddle::string::split_string<std::string>(path, ";");
S
seemingwang 已提交
1054
  int64_t count = 0;
S
seemingwang 已提交
1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079
  std::string sample_type = "random";
  bool is_weighted = false;
  int valid_count = 0;
  for (auto path : paths) {
    std::ifstream file(path);
    std::string line;
    while (std::getline(file, line)) {
      auto values = paddle::string::split_string<std::string>(line, "\t");
      count++;
      if (values.size() < 2) continue;
      auto src_id = std::stoull(values[0]);
      auto dst_id = std::stoull(values[1]);
      if (reverse_edge) {
        std::swap(src_id, dst_id);
      }
      float weight = 1;
      if (values.size() == 3) {
        weight = std::stof(values[2]);
        sample_type = "weighted";
        is_weighted = true;
      }

      size_t src_shard_id = src_id % shard_num;

      if (src_shard_id >= shard_end || src_shard_id < shard_start) {
1080 1081
        VLOG(4) << "will not load " << src_id << " from " << path
                << ", please check id distribution";
S
seemingwang 已提交
1082 1083
        continue;
      }
1084

S
seemingwang 已提交
1085 1086
      if (count % 1000000 == 0) {
        VLOG(0) << count << " edges are loaded from filepath";
1087
        VLOG(0) << line;
S
seemingwang 已提交
1088 1089 1090
      }

      size_t index = src_shard_id - shard_start;
1091 1092
      edge_shards[idx][index]->add_graph_node(src_id)->build_edges(is_weighted);
      edge_shards[idx][index]->add_neighbor(src_id, dst_id, weight);
S
seemingwang 已提交
1093
      valid_count++;
1094 1095 1096 1097 1098 1099 1100 1101 1102
#ifdef PADDLE_WITH_HETERPS
      // if (gpups_mode) pthread_rwlock_rdlock(rw_lock.get());
      if (count > fixed_load_edges && search_level == 2) {
        dump_edges_to_ssd(idx);
        VLOG(0) << "dumping edges to ssd, edge count is reset to 0";
        clear_graph(idx);
        count = 0;
      }
#endif
S
seemingwang 已提交
1103 1104 1105 1106 1107
    }
  }
  VLOG(0) << valid_count << "/" << count << " edges are loaded successfully in "
          << path;

1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120
// Build Sampler j
#ifdef PADDLE_WITH_HETERPS
  // if (gpups_mode) pthread_rwlock_rdlock(rw_lock.get());
  if (search_level == 2) {
    if (count > 0) {
      dump_edges_to_ssd(idx);
      VLOG(0) << "dumping edges to ssd, edge count is reset to 0";
      clear_graph(idx);
      count = 0;
    }
    return 0;
  }
#endif
1121
  for (auto &shard : edge_shards[idx]) {
1122 1123 1124 1125 1126 1127
    auto bucket = shard->get_bucket();
    for (size_t i = 0; i < bucket.size(); i++) {
      bucket[i]->build_sampler(sample_type);
    }
  }

S
seemingwang 已提交
1128 1129 1130
  return 0;
}

1131
Node *GraphTable::find_node(int type_id, int idx, int64_t id) {
S
seemingwang 已提交
1132 1133
  size_t shard_id = id % shard_num;
  if (shard_id >= shard_end || shard_id < shard_start) {
1134
    return nullptr;
S
seemingwang 已提交
1135 1136
  }
  size_t index = shard_id - shard_start;
1137 1138
  auto &search_shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
  Node *node = search_shards[index]->find_node(id);
S
seemingwang 已提交
1139 1140
  return node;
}
1141
uint32_t GraphTable::get_thread_pool_index(int64_t node_id) {
1142
  return node_id % shard_num % shard_num_per_server % task_pool_size_;
S
seemingwang 已提交
1143
}
1144

1145
uint32_t GraphTable::get_thread_pool_index_by_shard_index(int64_t shard_index) {
S
seemingwang 已提交
1146
  return shard_index % shard_num_per_server % task_pool_size_;
1147 1148
}

1149 1150 1151 1152
int32_t GraphTable::clear_nodes(int type_id, int idx) {
  auto &search_shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
  for (int i = 0; i < search_shards.size(); i++) {
    search_shards[i]->clear();
1153 1154 1155 1156
  }
  return 0;
}

1157
int32_t GraphTable::random_sample_nodes(int type_id, int idx, int sample_size,
S
seemingwang 已提交
1158 1159 1160
                                        std::unique_ptr<char[]> &buffer,
                                        int &actual_size) {
  int total_size = 0;
1161
  auto &shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
1162
  for (int i = 0; i < (int)shards.size(); i++) {
1163
    total_size += shards[i]->get_size();
S
seemingwang 已提交
1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199
  }
  if (sample_size > total_size) sample_size = total_size;
  int range_num = random_sample_nodes_ranges;
  if (range_num > sample_size) range_num = sample_size;
  if (sample_size == 0 || range_num == 0) return 0;
  std::vector<int> ranges_len, ranges_pos;
  int remain = sample_size, last_pos = -1, num;
  std::set<int> separator_set;
  for (int i = 0; i < range_num - 1; i++) {
    while (separator_set.find(num = rand() % (sample_size - 1)) !=
           separator_set.end())
      ;
    separator_set.insert(num);
  }
  for (auto p : separator_set) {
    ranges_len.push_back(p - last_pos);
    last_pos = p;
  }
  ranges_len.push_back(sample_size - 1 - last_pos);
  remain = total_size - sample_size + range_num;
  separator_set.clear();
  for (int i = 0; i < range_num; i++) {
    while (separator_set.find(num = rand() % remain) != separator_set.end())
      ;
    separator_set.insert(num);
  }
  int used = 0, index = 0;
  last_pos = -1;
  for (auto p : separator_set) {
    used += p - last_pos - 1;
    last_pos = p;
    ranges_pos.push_back(used);
    used += ranges_len[index++];
  }
  std::vector<std::pair<int, int>> first_half, second_half;
  int start_index = rand() % total_size;
1200
  for (size_t i = 0; i < ranges_len.size() && i < ranges_pos.size(); i++) {
S
seemingwang 已提交
1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214
    if (ranges_pos[i] + ranges_len[i] - 1 + start_index < total_size)
      first_half.push_back({ranges_pos[i] + start_index,
                            ranges_pos[i] + ranges_len[i] + start_index});
    else if (ranges_pos[i] + start_index >= total_size) {
      second_half.push_back(
          {ranges_pos[i] + start_index - total_size,
           ranges_pos[i] + ranges_len[i] + start_index - total_size});
    } else {
      first_half.push_back({ranges_pos[i] + start_index, total_size});
      second_half.push_back(
          {0, ranges_pos[i] + ranges_len[i] + start_index - total_size});
    }
  }
  for (auto &pair : first_half) second_half.push_back(pair);
1215
  std::vector<int64_t> res;
1216
  get_nodes_ids_by_ranges(type_id, idx, second_half, res);
1217
  actual_size = res.size() * sizeof(int64_t);
S
seemingwang 已提交
1218 1219 1220 1221 1222
  buffer.reset(new char[actual_size]);
  char *pointer = buffer.get();
  memcpy(pointer, res.data(), actual_size);
  return 0;
}
1223
int32_t GraphTable::random_sample_neighbors(
1224
    int idx, int64_t *node_ids, int sample_size,
1225 1226
    std::vector<std::shared_ptr<char>> &buffers, std::vector<int> &actual_sizes,
    bool need_weight) {
S
seemingwang 已提交
1227
  size_t node_num = buffers.size();
1228
  std::function<void(char *)> char_del = [](char *c) { delete[] c; };
S
seemingwang 已提交
1229
  std::vector<std::future<int>> tasks;
1230 1231
  std::vector<std::vector<uint32_t>> seq_id(task_pool_size_);
  std::vector<std::vector<SampleKey>> id_list(task_pool_size_);
S
seemingwang 已提交
1232
  size_t index;
1233 1234 1235 1236
  for (size_t idy = 0; idy < node_num; ++idy) {
    index = get_thread_pool_index(node_ids[idy]);
    seq_id[index].emplace_back(idy);
    id_list[index].emplace_back(idx, node_ids[idy], sample_size, need_weight);
S
seemingwang 已提交
1237
  }
1238

1239
  for (int i = 0; i < (int)seq_id.size(); i++) {
S
seemingwang 已提交
1240 1241
    if (seq_id[i].size() == 0) continue;
    tasks.push_back(_shards_task_pool[i]->enqueue([&, i, this]() -> int {
1242
      int64_t node_id;
S
seemingwang 已提交
1243 1244 1245 1246
      std::vector<std::pair<SampleKey, SampleResult>> r;
      LRUResponse response = LRUResponse::blocked;
      if (use_cache) {
        response =
1247
            scaled_lru->query(i, id_list[i].data(), id_list[i].size(), r);
S
seemingwang 已提交
1248 1249 1250 1251 1252 1253
      }
      int index = 0;
      std::vector<SampleResult> sample_res;
      std::vector<SampleKey> sample_keys;
      auto &rng = _shards_task_rng_pool[i];
      for (size_t k = 0; k < id_list[i].size(); k++) {
1254
        if (index < (int)r.size() &&
S
seemingwang 已提交
1255
            r[index].first.node_key == id_list[i][k].node_key) {
1256 1257 1258
          int idy = seq_id[i][k];
          actual_sizes[idy] = r[index].second.actual_size;
          buffers[idy] = r[index].second.buffer;
S
seemingwang 已提交
1259 1260 1261
          index++;
        } else {
          node_id = id_list[i][k].node_key;
1262 1263 1264
          Node *node = find_node(0, idx, node_id);
          int idy = seq_id[i][k];
          int &actual_size = actual_sizes[idy];
S
seemingwang 已提交
1265
          if (node == nullptr) {
1266 1267
#ifdef PADDLE_WITH_HETERPS
            if (search_level == 2) {
1268
              VLOG(2) << "enter sample from ssd";
1269
              char *buffer_addr = random_sample_neighbor_from_ssd(
1270
                  idx, node_id, sample_size, rng, actual_size);
1271 1272 1273 1274 1275 1276 1277
              if (actual_size != 0) {
                std::shared_ptr<char> &buffer = buffers[idx];
                buffer.reset(buffer_addr, char_del);
              }
              continue;
            }
#endif
S
seemingwang 已提交
1278 1279 1280
            actual_size = 0;
            continue;
          }
1281
          std::shared_ptr<char> &buffer = buffers[idy];
S
seemingwang 已提交
1282
          std::vector<int> res = node->sample_k(sample_size, rng);
1283 1284 1285
          actual_size =
              res.size() * (need_weight ? (Node::id_size + Node::weight_size)
                                        : Node::id_size);
S
seemingwang 已提交
1286
          int offset = 0;
1287
          int64_t id;
S
seemingwang 已提交
1288 1289 1290
          float weight;
          char *buffer_addr = new char[actual_size];
          if (response == LRUResponse::ok) {
1291
            sample_keys.emplace_back(idx, node_id, sample_size, need_weight);
S
seemingwang 已提交
1292 1293
            sample_res.emplace_back(actual_size, buffer_addr);
            buffer = sample_res.back().buffer;
1294
          } else {
S
seemingwang 已提交
1295 1296 1297 1298 1299 1300
            buffer.reset(buffer_addr, char_del);
          }
          for (int &x : res) {
            id = node->get_neighbor_id(x);
            memcpy(buffer_addr + offset, &id, Node::id_size);
            offset += Node::id_size;
1301 1302 1303 1304 1305
            if (need_weight) {
              weight = node->get_neighbor_weight(x);
              memcpy(buffer_addr + offset, &weight, Node::weight_size);
              offset += Node::weight_size;
            }
1306 1307
          }
        }
1308
      }
S
seemingwang 已提交
1309 1310 1311
      if (sample_res.size()) {
        scaled_lru->insert(i, sample_keys.data(), sample_res.data(),
                           sample_keys.size());
1312 1313 1314
      }
      return 0;
    }));
S
seemingwang 已提交
1315
  }
S
seemingwang 已提交
1316 1317
  for (auto &t : tasks) {
    t.get();
S
seemingwang 已提交
1318 1319 1320 1321
  }
  return 0;
}

1322
int32_t GraphTable::get_node_feat(int idx, const std::vector<int64_t> &node_ids,
S
seemingwang 已提交
1323 1324 1325 1326
                                  const std::vector<std::string> &feature_names,
                                  std::vector<std::vector<std::string>> &res) {
  size_t node_num = node_ids.size();
  std::vector<std::future<int>> tasks;
1327 1328
  for (size_t idy = 0; idy < node_num; ++idy) {
    int64_t node_id = node_ids[idy];
S
seemingwang 已提交
1329
    tasks.push_back(_shards_task_pool[get_thread_pool_index(node_id)]->enqueue(
1330 1331
        [&, idx, idy, node_id]() -> int {
          Node *node = find_node(1, idx, node_id);
S
seemingwang 已提交
1332 1333 1334 1335

          if (node == nullptr) {
            return 0;
          }
1336 1337
          for (int feat_idx = 0; feat_idx < (int)feature_names.size();
               ++feat_idx) {
S
seemingwang 已提交
1338
            const std::string &feature_name = feature_names[feat_idx];
1339
            if (feat_id_map[idx].find(feature_name) != feat_id_map[idx].end()) {
S
seemingwang 已提交
1340 1341
              // res[feat_idx][idx] =
              // node->get_feature(feat_id_map[feature_name]);
1342 1343
              auto feat = node->get_feature(feat_id_map[idx][feature_name]);
              res[feat_idx][idy] = feat;
S
seemingwang 已提交
1344 1345 1346 1347
            }
          }
          return 0;
        }));
S
seemingwang 已提交
1348
  }
1349 1350
  for (size_t idy = 0; idy < node_num; ++idy) {
    tasks[idy].get();
S
seemingwang 已提交
1351 1352 1353 1354 1355
  }
  return 0;
}

int32_t GraphTable::set_node_feat(
1356
    int idx, const std::vector<int64_t> &node_ids,
S
seemingwang 已提交
1357 1358 1359 1360
    const std::vector<std::string> &feature_names,
    const std::vector<std::vector<std::string>> &res) {
  size_t node_num = node_ids.size();
  std::vector<std::future<int>> tasks;
1361 1362
  for (size_t idy = 0; idy < node_num; ++idy) {
    int64_t node_id = node_ids[idy];
S
seemingwang 已提交
1363
    tasks.push_back(_shards_task_pool[get_thread_pool_index(node_id)]->enqueue(
1364
        [&, idx, idy, node_id]() -> int {
S
seemingwang 已提交
1365
          size_t index = node_id % this->shard_num - this->shard_start;
1366 1367
          auto node = feature_shards[idx][index]->add_feature_node(node_id);
          node->set_feature_size(this->feat_name[idx].size());
1368 1369
          for (int feat_idx = 0; feat_idx < (int)feature_names.size();
               ++feat_idx) {
S
seemingwang 已提交
1370
            const std::string &feature_name = feature_names[feat_idx];
1371 1372 1373
            if (feat_id_map[idx].find(feature_name) != feat_id_map[idx].end()) {
              node->set_feature(feat_id_map[idx][feature_name],
                                res[feat_idx][idy]);
S
seemingwang 已提交
1374 1375 1376 1377
            }
          }
          return 0;
        }));
S
seemingwang 已提交
1378
  }
1379 1380
  for (size_t idy = 0; idy < node_num; ++idy) {
    tasks[idy].get();
S
seemingwang 已提交
1381 1382 1383 1384 1385
  }
  return 0;
}

std::pair<int32_t, std::string> GraphTable::parse_feature(
1386
    int idx, std::string feat_str) {
S
seemingwang 已提交
1387 1388 1389
  // Return (feat_id, btyes) if name are in this->feat_name, else return (-1,
  // "")
  auto fields = paddle::string::split_string<std::string>(feat_str, " ");
1390 1391 1392 1393
  if (feat_id_map[idx].count(fields[0])) {
    // if (this->feat_id_map.count(fields[0])) {
    int32_t id = this->feat_id_map[idx][fields[0]];
    std::string dtype = this->feat_dtype[idx][id];
S
seemingwang 已提交
1394 1395 1396 1397 1398 1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416 1417
    std::vector<std::string> values(fields.begin() + 1, fields.end());
    if (dtype == "feasign") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), paddle::string::join_strings(values, ' '));
    } else if (dtype == "string") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), paddle::string::join_strings(values, ' '));
    } else if (dtype == "float32") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), FeatureNode::parse_value_to_bytes<float>(values));
    } else if (dtype == "float64") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), FeatureNode::parse_value_to_bytes<double>(values));
    } else if (dtype == "int32") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), FeatureNode::parse_value_to_bytes<int32_t>(values));
    } else if (dtype == "int64") {
      return std::make_pair<int32_t, std::string>(
          int32_t(id), FeatureNode::parse_value_to_bytes<int64_t>(values));
    }
  }
  return std::make_pair<int32_t, std::string>(-1, "");
}

1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430 1431 1432 1433 1434 1435 1436 1437
std::vector<std::vector<int64_t>> GraphTable::get_all_id(int type_id, int idx,
                                                         int slice_num) {
  std::vector<std::vector<int64_t>> res(slice_num);
  auto &search_shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
  std::vector<std::future<std::vector<int64_t>>> tasks;
  for (int i = 0; i < search_shards.size(); i++) {
    tasks.push_back(_shards_task_pool[i % task_pool_size_]->enqueue(
        [&search_shards, i]() -> std::vector<int64_t> {
          return search_shards[i]->get_all_id();
        }));
  }
  for (size_t i = 0; i < tasks.size(); ++i) {
    tasks[i].wait();
  }
  for (size_t i = 0; i < tasks.size(); i++) {
    auto ids = tasks[i].get();
    for (auto &id : ids) res[id % slice_num].push_back(id);
  }
  return res;
}
1438 1439
int32_t GraphTable::pull_graph_list(int type_id, int idx, int start,
                                    int total_size,
S
seemingwang 已提交
1440 1441 1442 1443 1444
                                    std::unique_ptr<char[]> &buffer,
                                    int &actual_size, bool need_feature,
                                    int step) {
  if (start < 0) start = 0;
  int size = 0, cur_size;
1445
  auto &search_shards = type_id == 0 ? edge_shards[idx] : feature_shards[idx];
S
seemingwang 已提交
1446
  std::vector<std::future<std::vector<Node *>>> tasks;
1447 1448
  for (size_t i = 0; i < search_shards.size() && total_size > 0; i++) {
    cur_size = search_shards[i]->get_size();
S
seemingwang 已提交
1449 1450 1451 1452 1453 1454 1455
    if (size + cur_size <= start) {
      size += cur_size;
      continue;
    }
    int count = std::min(1 + (size + cur_size - start - 1) / step, total_size);
    int end = start + (count - 1) * step + 1;
    tasks.push_back(_shards_task_pool[i % task_pool_size_]->enqueue(
1456 1457 1458
        [&search_shards, this, i, start, end, step,
         size]() -> std::vector<Node *> {
          return search_shards[i]->get_batch(start - size, end - size, step);
S
seemingwang 已提交
1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472 1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483 1484 1485 1486
        }));
    start += count * step;
    total_size -= count;
    size += cur_size;
  }
  for (size_t i = 0; i < tasks.size(); ++i) {
    tasks[i].wait();
  }
  size = 0;
  std::vector<std::vector<Node *>> res;
  for (size_t i = 0; i < tasks.size(); i++) {
    res.push_back(tasks[i].get());
    for (size_t j = 0; j < res.back().size(); j++) {
      size += res.back()[j]->get_size(need_feature);
    }
  }
  char *buffer_addr = new char[size];
  buffer.reset(buffer_addr);
  int index = 0;
  for (size_t i = 0; i < res.size(); i++) {
    for (size_t j = 0; j < res[i].size(); j++) {
      res[i][j]->to_buffer(buffer_addr + index, need_feature);
      index += res[i][j]->get_size(need_feature);
    }
  }
  actual_size = size;
  return 0;
}
S
seemingwang 已提交
1487

1488
int32_t GraphTable::get_server_index_by_id(int64_t id) {
S
seemingwang 已提交
1489 1490
  return id % shard_num / shard_num_per_server;
}
Z
zhaocaibei123 已提交
1491
int32_t GraphTable::Initialize(const TableParameter &config,
1492 1493 1494
                               const FsClientParameter &fs_config) {
  LOG(INFO) << "in graphTable initialize";
  _config = config;
Z
zhaocaibei123 已提交
1495
  if (InitializeAccessor() != 0) {
1496 1497 1498
    LOG(WARNING) << "Table accessor initialize failed";
    return -1;
  }
S
seemingwang 已提交
1499

1500 1501 1502 1503 1504 1505 1506
  if (_afs_client.initialize(fs_config) != 0) {
    LOG(WARNING) << "Table fs_client initialize failed";
    // return -1;
  }
  auto graph = config.graph_parameter();
  shard_num = _config.shard_num();
  LOG(INFO) << "in graphTable initialize over";
Z
zhaocaibei123 已提交
1507
  return Initialize(graph);
1508
}
Z
zhaocaibei123 已提交
1509
int32_t GraphTable::Initialize(const GraphParameter &graph) {
1510
  task_pool_size_ = graph.task_pool_size();
1511
#ifdef PADDLE_WITH_HETERPS
1512 1513 1514 1515 1516
  _db = NULL;
  search_level = graph.search_level();
  if (search_level >= 2) {
    _db = paddle::distributed::RocksDBHandler::GetInstance();
    _db->initialize("./temp_gpups_db", task_pool_size_);
1517
  }
1518 1519 1520 1521 1522 1523 1524 1525 1526
// gpups_mode = true;
// auto *sampler =
//     CREATE_PSCORE_CLASS(GraphSampler, graph.gpups_graph_sample_class());
// auto slices =
//     string::split_string<std::string>(graph.gpups_graph_sample_args(), ",");
// std::cout << "slices" << std::endl;
// for (auto x : slices) std::cout << x << std::endl;
// sampler->init(graph.gpu_num(), this, slices);
// graph_sampler.reset(sampler);
1527
#endif
1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538
  if (shard_num == 0) {
    server_num = 1;
    _shard_idx = 0;
    shard_num = graph.shard_num();
  }
  use_cache = graph.use_cache();
  if (use_cache) {
    cache_size_limit = graph.cache_size_limit();
    cache_ttl = graph.cache_ttl();
    make_neighbor_sample_cache((size_t)cache_size_limit, (size_t)cache_ttl);
  }
S
seemingwang 已提交
1539 1540 1541
  _shards_task_pool.resize(task_pool_size_);
  for (size_t i = 0; i < _shards_task_pool.size(); ++i) {
    _shards_task_pool[i].reset(new ::ThreadPool(1));
1542
    _shards_task_rng_pool.push_back(paddle::framework::GetCPURandomEngine(0));
S
seemingwang 已提交
1543
  }
1544
  auto graph_feature = graph.graph_feature();
1545 1546 1547 1548 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567 1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579
  auto node_types = graph.node_types();
  auto edge_types = graph.edge_types();
  VLOG(0) << "got " << edge_types.size() << "edge types in total";
  feat_id_map.resize(node_types.size());
  for (int k = 0; k < edge_types.size(); k++) {
    VLOG(0) << "in initialize: get a edge_type " << edge_types[k];
    edge_to_id[edge_types[k]] = k;
    id_to_edge.push_back(edge_types[k]);
  }
  feat_name.resize(node_types.size());
  feat_shape.resize(node_types.size());
  feat_dtype.resize(node_types.size());
  VLOG(0) << "got " << node_types.size() << "node types in total";
  for (int k = 0; k < node_types.size(); k++) {
    feature_to_id[node_types[k]] = k;
    auto node_type = node_types[k];
    auto feature = graph_feature[k];
    id_to_feature.push_back(node_type);
    int feat_conf_size = static_cast<int>(feature.name().size());

    for (int i = 0; i < feat_conf_size; i++) {
      // auto &f_name = common.attributes()[i];
      // auto &f_shape = common.dims()[i];
      // auto &f_dtype = common.params()[i];
      auto &f_name = feature.name()[i];
      auto &f_shape = feature.shape()[i];
      auto &f_dtype = feature.dtype()[i];
      feat_name[k].push_back(f_name);
      feat_shape[k].push_back(f_shape);
      feat_dtype[k].push_back(f_dtype);
      feat_id_map[k][f_name] = i;
      VLOG(0) << "init graph table feat conf name:" << f_name
              << " shape:" << f_shape << " dtype:" << f_dtype;
    }
  }
1580 1581 1582 1583
  // this->table_name = common.table_name();
  // this->table_type = common.name();
  this->table_name = graph.table_name();
  this->table_type = graph.table_type();
S
seemingwang 已提交
1584 1585
  VLOG(0) << " init graph table type " << this->table_type << " table name "
          << this->table_name;
1586
  // int feat_conf_size = static_cast<int>(common.attributes().size());
1587
  // int feat_conf_size = static_cast<int>(graph_feature.name().size());
S
seemingwang 已提交
1588 1589
  VLOG(0) << "in init graph table shard num = " << shard_num << " shard_idx"
          << _shard_idx;
S
seemingwang 已提交
1590 1591 1592
  shard_num_per_server = sparse_local_shard_num(shard_num, server_num);
  shard_start = _shard_idx * shard_num_per_server;
  shard_end = shard_start + shard_num_per_server;
S
seemingwang 已提交
1593 1594
  VLOG(0) << "in init graph table shard idx = " << _shard_idx << " shard_start "
          << shard_start << " shard_end " << shard_end;
1595
  edge_shards.resize(id_to_edge.size());
1596 1597 1598
#ifdef PADDLE_WITH_HETERPS
  partitions.resize(id_to_edge.size());
#endif
1599 1600 1601 1602
  for (int k = 0; k < (int)edge_shards.size(); k++) {
    for (size_t i = 0; i < shard_num_per_server; i++) {
      edge_shards[k].push_back(new GraphShard());
    }
1603
  }
1604 1605 1606 1607 1608
  feature_shards.resize(id_to_feature.size());
  for (int k = 0; k < (int)feature_shards.size(); k++) {
    for (size_t i = 0; i < shard_num_per_server; i++) {
      feature_shards[k].push_back(new GraphShard());
    }
1609 1610
  }

S
seemingwang 已提交
1611 1612
  return 0;
}
1613

1614 1615
}  // namespace distributed
};  // namespace paddle