Merge pull request #805 from luotao1/breathe

remove breathe and doc/howto/source directory

.travis.yml

@@ -50,7 +50,7 @@ before_install:
     fi
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo paddle/scripts/travis/before_install.linux.sh; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then paddle/scripts/travis/before_install.osx.sh; fi
-  - pip install wheel protobuf sphinx breathe recommonmark virtualenv numpy sphinx_rtd_theme
+  - pip install wheel protobuf sphinx recommonmark virtualenv numpy sphinx_rtd_theme
 script:
   - paddle/scripts/travis/main.sh
 notifications:

cmake/check_packages.cmake

@@ -30,7 +30,6 @@ if(WITH_DOC)
   find_package(Sphinx REQUIRED)
   find_package(Doxygen REQUIRED)
   find_python_module(recommonmark REQUIRED)
-  find_python_module(breathe REQUIRED)
 endif()
 
 if(WITH_SWIG_PY)

doc/getstarted/build_and_install/build_from_source_en.md

@@ -79,7 +79,7 @@ As a simple example, consider the following:
 
     ```bash
     pip install 'sphinx>=1.4.0'
-    pip install sphinx_rtd_theme breathe recommonmark
+    pip install sphinx_rtd_theme recommonmark
 
     # install doxygen on Ubuntu
     sudo apt-get install doxygen 

doc/howto/source/api.rst

-API
-===
-
-.. doxygenfile:: paddle/api/PaddleAPI.h
-.. doxygenfile:: paddle/api/Internal.h

doc/howto/source/cuda/index.rst

-CUDA
-====
-
-.. toctree::
-  :maxdepth: 2
-
-  matrix.rst
-  nn.rst
-  utils.rst

doc/howto/source/cuda/matrix.rst

-Matrix
-======
-
-Base
-----
-
-hl_matrix.h
-```````````
-.. doxygenfile:: paddle/cuda/include/hl_matrix.h
-
-hl_matrix_base.h
-````````````````
-.. doxygenfile:: paddle/cuda/include/hl_matrix_base.cuh
-
-hl_matrix_apply.cuh
-```````````````````
-.. doxygenfile:: paddle/cuda/include/hl_matrix_apply.cuh
-
-hl_matrix_ops.cuh
-`````````````````
-.. doxygenfile:: paddle/cuda/include/hl_matrix_ops.cuh
-
-hl_matrix_type.cuh
-``````````````````
-.. doxygenfile:: paddle/cuda/include/hl_matrix_type.cuh
-
-hl_sse_matrix_kernel.cuh
-````````````````````````
-.. doxygenfile:: paddle/cuda/include/hl_sse_matrix_kernel.cuh
-
-Matrix Function 
----------------
-
-hl_batch_transpose.h
-````````````````````
-.. doxygenfile:: paddle/cuda/include/hl_batch_transpose.h
-
-hl_aggregate.h
-``````````````
-.. doxygenfile:: paddle/cuda/include/hl_aggregate.h
-
-hl_top_k.h
-``````````
-.. doxygenfile:: paddle/cuda/include/hl_top_k.h
-
-hl_table_apply.h
-````````````````
-.. doxygenfile:: paddle/cuda/include/hl_table_apply.h
-
-Sparse Matrix
--------------
-
-hl_sparse.h
-```````````
-.. doxygenfile:: paddle/cuda/include/hl_sparse.h
-
-hl_sparse.ph
-````````````
-.. doxygenfile:: paddle/cuda/include/hl_sparse.ph

doc/howto/source/cuda/nn.rst

-Neural Network
-==============
-
-Base
-----
-
-.. doxygenfile:: paddle/cuda/include/hl_gpu.h
-.. doxygenfile:: paddle/cuda/include/hl_functions.h
-.. doxygenfile:: paddle/cuda/include/hl_avx_functions.h
-.. doxygenfile:: paddle/cuda/include/hl_gpu_functions.cuh
-.. doxygenfile:: paddle/cuda/include/hl_activation_functions.h
-
-
-CNN Related APIs
-----------------
-.. doxygenfile:: paddle/cuda/include/hl_cnn.h
-.. doxygenfile:: paddle/cuda/include/hl_cuda_cudnn.h
-.. doxygenfile:: paddle/cuda/include/hl_cuda_cudnn.ph
-
-RNN Related APIs
-----------------
-
-.. doxygenfile:: paddle/cuda/include/hl_recurrent_apply.cuh
-.. doxygenfile:: paddle/cuda/include/hl_sequence.h
-
-LSTM Model
-``````````
-
-.. doxygenfile:: paddle/cuda/include/hl_lstm.h
-.. dpxygenfile:: paddle/cuda/include/hl_cpu_lstm.cuh
-.. doxygenfile:: paddle/cuda/include/hl_gpu_lstm.cuh
-.. doxygenfile:: paddle/cuda/include/hl_lstm_ops.cuh
-
-GRU Model
-`````````
-
-.. doxygenfile:: paddle/cuda/include/hl_gru_ops.cuh
-.. doxygenfile:: paddle/cuda/include/hl_cpu_gru.cuh
-.. doxygenfile:: paddle/cuda/include/hl_gpu_gru.cuh

doc/howto/source/cuda/utils.rst

-Utils
-=====
-
-Dynamic Link Libs
------------------
-.. doxygenfile:: paddle/cuda/include/hl_dso_loader.h
-
-GPU Resources
--------------
-
-hl_cuda.ph
-``````````
-.. doxygenfile:: paddle/cuda/include/hl_cuda.ph
-
-hl_cuda.h
-`````````
-.. doxygenfile:: paddle/cuda/include/hl_cuda.h
-
-HPPL Base
----------
-.. doxygenfile:: paddle/cuda/include/hl_base.h
-
-CUBLAS Wrapper
---------------
-.. doxygenfile:: paddle/cuda/include/hl_cuda_cublas.h
-
-Timer
------
-.. doxygenfile:: paddle/cuda/include/hl_time.h
-
-Thread Resource
----------------
-.. doxygenfile:: paddle/cuda/include/hl_thread.ph
-
-Device Function
----------------
-.. doxygenfile:: paddle/cuda/include/hl_device_functions.cuh

doc/howto/source/gserver/activations.rst

-Activations
-===========
-
-..  doxygenclass:: paddle::ActivationFunction
-    :members:

doc/howto/source/gserver/dataproviders.rst

-==============
-Data Providers
-==============
-
-DataProviders
-=============
-
-Base
-----
-..  doxygenclass:: paddle::DataProvider
-    :members:
-
-DataProviderGroup
------------------
-..  doxygenclass:: paddle::DataProviderGroup
-    :members:
-
-MultiDataProvider
------------------
-..  doxygenclass:: paddle::MultiDataProvider
-    :members:
-
-PyDataProvider
-==============
-
-IFieldScanner
--------------
-..  doxygenclass:: paddle::IFieldScanner
-    :members:
-
-DenseScanner
--------------
-..  doxygenclass:: paddle::DenseScanner
-    :members:
-
-IndexScanner
--------------
-..  doxygenclass:: paddle::IndexScanner
-    :members:
-
-SparseNonValueScanner
----------------------
-..  doxygenclass:: paddle::SparseNonValueScanner
-    :members:
-
-SparseValueScanner
-------------------
-..  doxygenclass:: paddle::SparseValueScanner
-    :members:
-
-SequenceScanner
----------------
-..  doxygenclass:: paddle::SparseValueScanner
-    :members:
-
-IPyDataProviderCache
---------------------
-..  doxygenclass:: paddle::IPyDataProviderCache
-    :members:
-
-NoCacheStrategy
----------------
-..  doxygenclass:: paddle::NoCacheStrategy
-    :members:
-
-CacheOnePassInMemory
---------------------
-..  doxygenclass:: paddle::CacheOnePassInMemory
-    :members:
-
-IPyDataProvider
----------------
-..  doxygenclass:: paddle::PyDataProvider2
-    :members:
-
-ProtoDataProvider
-=================
-
-ProtoDataProvider
-----------------
-..  doxygenclass:: paddle::ProtoDataProvider
-    :members:
-
-ProtoSequenceDataProvider
--------------------------
-..  doxygenclass:: paddle::ProtoSequenceDataProvider
-    :members:

doc/howto/source/gserver/evaluators.rst

-==========
-Evaluators
-==========
-
-Base
-====
-
-..  doxygenclass:: paddle::Evaluator
-    :members:
-
-Sum
-===
-
-SumEvaluator
-------------
-..  doxygenclass:: paddle::SumEvaluator
-    :members:
-
-ColumnSumEvaluator
-------------------
-..  doxygenclass:: paddle::ColumnSumEvaluator
-    :members:
-
-Classification
-==============
-
-ClassificationErrorEvaluator
----------------------------
-..  doxygenclass:: paddle::ClassificationErrorEvaluator
-    :members:
-
-SequenceClassificationErrorEvaluator
-------------------------------------
-..  doxygenclass:: paddle::SequenceClassificationErrorEvaluator
-    :members:
-
-AucEvaluator
--------------
-..  doxygenclass:: paddle::AucEvaluator
-    :members:
-
-PrecisionRecallEvaluator
-------------------------
-..  doxygenclass:: paddle::PrecisionRecallEvaluator
-    :members:
-
-ChunkEvaluator
---------------
-..  doxygenclass:: paddle::ChunkEvaluator
-    :members:
-
-CTCEvaluator
-------------
-..  doxygenclass:: paddle::CTCErrorEvaluator
-    :members:
-
-
-Rank
-====
-
-PnpairEvaluator
--------------
-..  doxygenclass:: paddle::PnpairEvaluator
-    :members:
-
-AucEvaluator
--------------
-..  doxygenclass:: paddle::RankAucEvaluator
-    :members:
-
-
-Printer
-=======
-
-ValuePrinter
--------------
-..  doxygenclass:: paddle::ValuePrinter
-    :members:
-
-GradientPrinter
----------------
-..  doxygenclass:: paddle::GradientPrinter
-    :members:
-
-MaxIdPrinter
-------------
-..  doxygenclass:: paddle::MaxIdPrinter
-    :members:
-
-MaxFramePrinter
----------------
-..  doxygenclass:: paddle::MaxFramePrinter
-    :members:
-
-SequenceTextPrinter
-------------------
-..  doxygenclass:: paddle::SequenceTextPrinter
-    :members:
-
-ClassificationErrorPrinter
---------------------------
-..  doxygenclass:: paddle::ClassificationErrorPrinter
-    :members:

doc/howto/source/gserver/gradientmachines.rst

-Gradient Machines
-=================
-
-GradientMachine
----------------
-..  doxygenclass:: paddle::GradientMachine
-    :members:
-
-GradientMachineMode
--------------------
-..  doxygenclass:: paddle::IGradientMachineMode
-    :members:
-
-MultiGradientMachine
---------------------
-..  doxygenclass:: paddle::MultiGradientMachine
-    :members:
-
-TrainerThread
-`````````````
-..  doxygenclass:: paddle::TrainerThread
-    :members:
-
-RecurrentGradientMachine
-------------------------
-..  doxygenclass:: paddle::RecurrentGradientMachine
-    :members:

doc/howto/source/gserver/index.rst

-GServer
-=======
-
-.. toctree::
-  :maxdepth: 2
-
-  activations.rst
-  dataproviders.rst
-  evaluators.rst
-  gradientmachines.rst
-  layers.rst
-  neworks.rst

doc/howto/source/gserver/layers.rst

-======
-Layers
-======
-
-Base
-====
-
-Layer 
------
-..  doxygenclass:: paddle::Layer
-    :members:
-
-Projection
-----------
-..  doxygenclass:: paddle::Projection
-    :members:
-
-Operator
---------
-..  doxygenclass:: paddle::Operator
-    :members:
-    
-Data Layer
-==========
-
-..  doxygenclass:: paddle::DataLayer
-    :members:
-
-Fully Connected Layers
-======================
-
-FullyConnectedLayer
--------------------
-..  doxygenclass:: paddle::FullyConnectedLayer
-    :members:
-
-SelectiveFullyConnectedLayer
-----------------------------
-..  doxygenclass:: paddle::SelectiveFullyConnectedLayer
-    :members:
-
-Conv Layers
-===========
-
-ConvBaseLayer
--------------
-..  doxygenclass:: paddle::ConvBaseLayer
-    :members:
-
-ConvOperator
-------------
-..  doxygenclass:: paddle::ConvOperator
-    :members:
-
-ConvShiftLayer
---------------
-..  doxygenclass:: paddle::ConvShiftLayer
-    :members:
-
-CudnnConvLayer
---------------
-..  doxygenclass:: paddle::CudnnConvLayer
-    :members:
-
-ExpandConvBaseLayer
--------------------
-..  doxygenclass:: paddle::ExpandConvBaseLayer
-    :members:
-
-ExpandConvLayer
----------------
-..  doxygenclass:: paddle::ExpandConvLayer
-    :members:
-
-ContextProjection
------------------
-..  doxygenclass:: paddle::ContextProjection
-    :members:
-
-Pooling Layers
-==============
-
-PoolLayer
----------
-..  doxygenclass:: paddle::PoolLayer
-    :members:
-
-PoolProjectionLayer
--------------------
-..  doxygenclass:: paddle::PoolProjectionLayer
-    :members:
-
-CudnnPoolLayer
---------------
-..  doxygenclass:: paddle::CudnnPoolLayer
-    :members:
-
-SpatialPyramidPoolLayer
------------------------
-..  doxygenclass:: paddle::SpatialPyramidPoolLayer
-    :members:
-
-MaxOutLayer
------------
-..  doxygenclass:: paddle::MaxOutLayer
-    :members:
-
-Norm Layers
-===========
-
-NormLayer
----------
-..  doxygenclass:: paddle::NormLayer
-    :members:
-
-CMRProjectionNormLayer
-----------------------
-..  doxygenclass:: paddle::CMRProjectionNormLayer
-    :members:
-
-DataNormLayer
--------------
-..  doxygenclass:: paddle::DataNormLayer
-    :members:
-
-ResponseNormLayer
------------------
-..  doxygenclass:: paddle::ResponseNormLayer
-    :members:
-
-BatchNormBaseLayer
-------------------
-..  doxygenclass:: paddle::BatchNormBaseLayer
-    :members:
-
-BatchNormalizationLayer
------------------------
-..  doxygenclass:: paddle::BatchNormalizationLayer
-    :members:
-
-CudnnBatchNormLayer
------------------------
-..  doxygenclass:: paddle::CudnnBatchNormLayer
-    :members:
-
-SumToOneNormLayer
------------------
-..  doxygenclass:: paddle::SumToOneNormLayer
-    :members:
-
-Activation Layer
-================
-
-ParameterReluLayer
-------------------
-..  doxygenclass:: paddle::ParameterReluLayer
-    :members:
-
-Recurrent Layers
-================
-
-RecurrentLayer
---------------
-..  doxygenclass:: paddle::RecurrentLayer
-    :members:
-
-SequenceToBatch
----------------
-..  doxygenclass:: paddle::SequenceToBatch
-    :members:
-
-LSTM
-----
-LstmLayer
-`````````
-..  doxygenclass:: paddle::LstmLayer
-    :members:
-
-LstmStepLayer
-`````````````
-..  doxygenclass:: paddle::LstmStepLayer
-    :members:
-
-LstmCompute
-```````````
-..  doxygenclass:: paddle::LstmCompute
-    :members:
-
-MDLSTM
-------
-MDLstmLayer
-```````````
-..  doxygenclass:: paddle::MDLstmLayer
-    :members:
-
-CoordIterator
-`````````````
-..  doxygenclass:: paddle::CoordIterator
-    :members:
-
-GRU
----
-GatedRecurrentLayer
-```````````````````
-..  doxygenclass:: paddle::GatedRecurrentLayer
-    :members:
-
-GruStepLayer
-````````````
-..  doxygenclass:: paddle::GruStepLayer
-    :members:
-
-GruCompute
-``````````
-..  doxygenclass:: paddle::GruCompute
-    :members:
-
-Recurrent Layer Group
-=====================
-
-AgentLayer
-----------
-..  doxygenclass:: paddle::AgentLayer
-    :members:
-
-SequenceAgentLayer
-------------------
-..  doxygenclass:: paddle::SequenceAgentLayer
-    :members:
-
-GatherAgentLayer
-----------------
-..  doxygenclass:: paddle::GatherAgentLayer
-    :members:
-
-SequenceGatherAgentLayer
-------------------------
-..  doxygenclass:: paddle::SequenceGatherAgentLayer
-    :members:
-
-ScatterAgentLayer
------------------
-..  doxygenclass:: paddle::ScatterAgentLayer
-    :members:
-
-SequenceScatterAgentLayer
--------------------------
-..  doxygenclass:: paddle::SequenceScatterAgentLayer
-    :members:
-
-GetOutputLayer
---------------
-..  doxygenclass:: paddle::GetOutputLayer
-    :members:
-
-Mixed Layer
-===========
-..  doxygenclass:: paddle::MixedLayer
-    :members:
-
-DotMulProjection
-----------------
-..  doxygenclass:: paddle::DotMulProjection
-    :members:
-
-DotMulOperator
---------------
-..  doxygenclass:: paddle::DotMulOperator
-    :members:
-
-FullMatrixProjection
---------------------
-..  doxygenclass:: paddle::FullMatrixProjection
-    :members:
-
-IdentityProjection
-------------------
-..  doxygenclass:: paddle::IdentityProjection
-    :members:
-
-IdentityOffsetProjection
-------------------------
-..  doxygenclass:: paddle::IdentityOffsetProjection
-    :members:
-
-TableProjection
----------------
-..  doxygenclass:: paddle::TableProjection
-    :members:
-
-TransposedFullMatrixProjection
-------------------------------
-..  doxygenclass:: paddle::TransposedFullMatrixProjection
-    :members:
-
-Aggregate Layers
-================
-
-Aggregate
----------
-AverageLayer
-````````````
-..  doxygenclass:: paddle::AverageLayer
-    :members:
-
-MaxLayer
-````````
-..  doxygenclass:: paddle::MaxLayer
-    :members:
-
-SequenceLastInstanceLayer
-`````````````````````````
-..  doxygenclass:: paddle::SequenceLastInstanceLayer
-    :members:
-
-Concat
-------
-ConcatenateLayer
-````````````````
-..  doxygenclass:: paddle::ConcatenateLayer
-    :members:
-
-ConcatenateLayer2
-`````````````````
-..  doxygenclass:: paddle::ConcatenateLayer2
-    :members:
-
-SequenceConcatLayer
-```````````````````
-..  doxygenclass:: paddle::SequenceConcatLayer
-    :members:
-
-Subset
-------
-SubSequenceLayer
-````````````````
-..  doxygenclass:: paddle::SubSequenceLayer
-    :members:
-
-Reshaping Layers
-================
-
-BlockExpandLayer
-----------------
-..  doxygenclass:: paddle::BlockExpandLayer
-    :members:
-
-ExpandLayer
------------
-..  doxygenclass:: paddle::ExpandLayer
-    :members:
-
-FeatureMapExpandLayer
----------------------
-..  doxygenclass:: paddle::FeatureMapExpandLayer
-    :members:
-
-ResizeLayer
------------
-..  doxygenclass:: paddle::ResizeLayer
-    :members:
-
-SequenceReshapeLayer
---------------------
-..  doxygenclass:: paddle::SequenceReshapeLayer
-    :members:
-
-Math Layers
-===========
-
-AddtoLayer
-----------
-..  doxygenclass:: paddle::AddtoLayer
-    :members:
-
-ConvexCombinationLayer
-----------------------
-..  doxygenclass:: paddle::ConvexCombinationLayer
-    :members:
-
-InterpolationLayer
-------------------
-..  doxygenclass:: paddle::InterpolationLayer
-    :members:
-
-MultiplexLayer
---------------
-..  doxygenclass:: paddle::MultiplexLayer
-    :members:
-
-OuterProdLayer
---------------
-..  doxygenclass:: paddle::OuterProdLayer
-    :members:
-
-PowerLayer
-----------
-..  doxygenclass:: paddle::PowerLayer
-    :members:
-
-ScalingLayer
-------------
-..  doxygenclass:: paddle::ScalingLayer
-    :members:
-
-SlopeInterceptLayer
--------------------
-..  doxygenclass:: paddle::SlopeInterceptLayer
-    :members:
-
-TensorLayer
-------------
-..  doxygenclass:: paddle::TensorLayer
-    :members:
-
-TransLayer
-----------
-..  doxygenclass:: paddle::TransLayer
-    :members:
-
-Sampling Layers
-===============
-
-BilinearInterpLayer
--------------------
-..  doxygenclass:: paddle::BilinearInterpLayer
-    :members:
-
-MultinomialSampler
-------------------
-..  doxygenclass:: paddle::MultinomialSampler
-    :members:
-
-MaxIdLayer
-----------
-..  doxygenclass:: paddle::MaxIdLayer
-    :members:
-
-SamplingIdLayer
----------------
-..  doxygenclass:: paddle::SamplingIdLayer
-    :members:
-
-Cost Layers
-===========
-
-CostLayer
------------
-..  doxygenclass:: paddle::CostLayer
-    :members:
-
-HuberTwoClass
-`````````````
-..  doxygenclass:: paddle::HuberTwoClass
-    :members:
-
-LambdaCost
-```````````
-..  doxygenclass:: paddle::LambdaCost
-    :members:
-
-MultiBinaryLabelCrossEntropy
-````````````````````````````
-..  doxygenclass:: paddle::MultiBinaryLabelCrossEntropy
-    :members:
-
-MultiClassCrossEntropy
-```````````````````````
-..  doxygenclass:: paddle::MultiClassCrossEntropy
-    :members:
-
-MultiClassCrossEntropyWithSelfNorm
-``````````````````````````````````
-..  doxygenclass:: paddle::MultiClassCrossEntropyWithSelfNorm
-    :members:
-
-RankingCost
-```````````
-..  doxygenclass:: paddle::RankingCost
-    :members:
-
-SoftBinaryClassCrossEntropy
-```````````````````````````
-..  doxygenclass:: paddle::SoftBinaryClassCrossEntropy
-    :members:
-
-SumOfSquaresCostLayer
-`````````````````````
-..  doxygenclass:: paddle::SumOfSquaresCostLayer
-    :members:
-
-SumCostLayer
-`````````````````````
-..  doxygenclass:: paddle::SumCostLayer
-    :members:
-
-CosSimLayer
------------
-..  doxygenclass:: paddle::CosSimLayer
-    :members:
-
-CosSimVecMatLayer
------------------
-..  doxygenclass:: paddle::CosSimVecMatLayer
-    :members:
-
-CRFDecodingLayer
-----------------
-..  doxygenclass:: paddle::CRFDecodingLayer
-    :members:
-
-CRFLayer
---------
-..  doxygenclass:: paddle::CRFLayer
-    :members:
-
-CTCLayer
---------
-..  doxygenclass:: paddle::CTCLayer
-    :members:
-
-HierarchicalSigmoidLayer
-------------------------
-..  doxygenclass:: paddle::HierarchicalSigmoidLayer
-    :members:
-
-LinearChainCRF
---------------
-..  doxygenclass:: paddle::LinearChainCRF
-    :members:
-
-LinearChainCTC
---------------
-..  doxygenclass:: paddle::LinearChainCTC
-    :members:
-
-NCELayer
---------
-..  doxygenclass:: paddle::NCELayer
-    :members:
-
-Validation Layers
------------------
-
-ValidationLayer
-```````````````
-..  doxygenclass:: paddle::ValidationLayer
-    :members:
-
-AucValidation
-`````````````
-..  doxygenclass:: paddle::AucValidation
-    :members:
-
-PnpairValidation
-````````````````
-..  doxygenclass:: paddle::PnpairValidation
-    :members:
-
-Check Layers
-============
-
-EosIdCheckLayer
----------------
-..  doxygenclass:: paddle::EosIdCheckLayer
-    :members:

doc/howto/source/gserver/neworks.rst

-Networks
-========
-
-NeuralNetwork
--------------
-..  doxygenclass:: paddle::NeuralNetwork
-    :members:
-
-ParallelNeuralNetwork
----------------------
-..  doxygenclass:: paddle::ParallelNeuralNetwork
-    :members:

doc/howto/source/index.rst

-Source Code Documents
-=====================
-
-.. toctree::
-  :maxdepth: 1
-
-  gserver/index.rst
-  trainer.rst
-  parameter/index.rst
-  pserver/index.rst
-  api.rst
-  cuda/index.rst
-  math/index.rst
-  utils/index.rst

doc/howto/source/math/functions.rst

-Functions
-=========
-
-MathFunctions
--------------
-.. doxygenfile:: paddle/math/MathFunctions.h
-
-SIMDFunctions
--------------
-.. doxygenfile:: paddle/math/SIMDFunctions.h

doc/howto/source/math/index.rst

-Math
-====
-
-.. toctree::
-  :maxdepth: 2
-
-  vector.rst
-  matrix.rst
-  functions.rst
-  utils.rst

doc/howto/source/math/matrix.rst

-Matrix
-======
-
-Base
-----
-
-BaseMatrix Template
-```````````````````
-..  doxygenclass:: paddle::BaseMatrixT
-    :members:
-
-Matrix
-``````
-..  doxygenclass:: paddle::Matrix
-    :members:
-
-MatrixOffset
-````````````
-..  doxygenclass:: paddle::MatrixOffset
-    :members:
-
-CpuMatrix
----------
-
-CpuMatrix
-`````````
-..  doxygenclass:: paddle::CpuMatrix
-    :members:
-
-SharedCpuMatrix
-```````````````
-..  doxygenclass:: paddle::SharedCpuMatrix
-    :members:
-
-GpuMatrix
----------
-..  doxygenclass:: paddle::GpuMatrix
-    :members:
-
-CpuSparseMatrix
----------------
-
-CpuSparseMatrix
-```````````````
-..  doxygenclass:: paddle::CpuSparseMatrix
-    :members:
-
-SparseRowCpuMatrix
-``````````````````
-..  doxygenclass:: paddle::SparseRowCpuMatrix
-    :members:
-
-SparseAutoGrowRowCpuMatrix
-``````````````````````````
-..  doxygenclass:: paddle::SparseAutoGrowRowCpuMatrix
-    :members:
-
-SparsePrefetchRowCpuMatrix
-``````````````````````````
-..  doxygenclass:: paddle::SparsePrefetchRowCpuMatrix
-    :members:
-
-SparseRowIdsCpuMatrix
-`````````````````````
-..  doxygenclass:: paddle::SparseRowIdsCpuMatrix
-    :members:
-
-CacheRowCpuMatrix
-`````````````````
-..  doxygenclass:: paddle::CacheRowCpuMatrix
-    :members:
-
-GpuSparseMatrix
----------------
-..  doxygenclass:: paddle::GpuSparseMatrix
-    :members:

doc/howto/source/math/utils.rst

-Memory Manager
-==============
-
-Memory Handle
--------------
-.. doxygenfile:: paddle/math/MemoryHandle.h
-
-Allocator
----------
-.. doxygenfile:: paddle/math/Allocator.h
-
-PoolAllocator
-`````````````
-.. doxygenfile:: paddle/math/PoolAllocator.h
-
-Storage
--------
-.. doxygenfile:: paddle/math/Storage.h

doc/howto/source/math/vector.rst

-Vector
-======
-
-BaseVector
-``````````
-..  doxygenclass:: paddle::BaseVector
-    :members:
-
-Vector Template
-```````````````
-..  doxygenclass:: paddle::VectorT
-    :members:
-
-CpuVector Template
-``````````````````
-..  doxygenclass:: paddle::CpuVectorT
-    :members:
-
-GpuVector Template
-``````````````````
-..  doxygenclass:: paddle::GpuVectorT
-    :members:
-
-ParallelCpuVector Template
-``````````````````````````
-..  doxygenclass:: paddle::ParallelCpuVectorT
-    :members:
-
-ParallelGpuVector Template
-``````````````````````````
-..  doxygenclass:: paddle::ParallelGpuVectorT
-    :members:
-
-CpuGpuVector Template
-`````````````````````
-..  doxygenclass:: paddle::CpuGpuVectorT
-    :members:

doc/howto/source/parameter/index.rst

-Parameter
-=========
-
-.. toctree::
-  :maxdepth: 2
-
-  parameter.rst
-  optimizer.rst
-  updater.rst

doc/howto/source/parameter/optimizer.rst

-Optimizer
-=========
-
-ParameterOptimizer
-------------------
-.. doxygenfile:: paddle/parameter/ParameterOptimizer.h
-
-Regularizer
------------
-.. doxygenfile:: paddle/parameter/Regularizer.h
-
-FirstOrderOptimizer
--------------------
-.. doxygenfile:: paddle/parameter/FirstOrderOptimizer.h
-
-AverageOptimizer
-----------------
-.. doxygenfile:: paddle/parameter/AverageOptimizer.h
-
-OptimizerWithRegularizer
-------------------------
-.. doxygenfile:: paddle/parameter/OptimizerWithRegularizer.h

doc/howto/source/parameter/parameter.rst

-Parameter
-=========
-
-Parameter
----------
-.. doxygenfile:: paddle/parameter/Argument.h
-.. doxygenfile:: paddle/parameter/Parameter.h
-.. doxygenfile:: paddle/parameter/ParallelParameter.h
-
-Weight
-------
-.. doxygenfile:: paddle/parameter/Weight.h

doc/howto/source/parameter/updater.rst

-Updater
-=======
-
-Base
-----
-.. doxygenfile:: paddle/parameter/ParameterUpdaterBase.h
-
-Hook
-----
-.. doxygenfile:: paddle/parameter/ParameterUpdaterHook.h
-
-Functions
----------
-.. doxygenfile:: paddle/parameter/ParameterUpdateFunctions.h

doc/howto/source/pserver/client.rst

-Client
-======
-
-BaseClient
-----------
-..  doxygenclass:: paddle::BaseClient
-    :members:
-
-ParameterClient2
-----------------
-..  doxygenclass:: paddle::ParameterClient2
-    :members:

doc/howto/source/pserver/index.rst

-PServer
-=======
-
-.. toctree::
-  :maxdepth: 2
-
-  client.rst
-  network.rst
-  server.rst
-  utils.rst

doc/howto/source/pserver/network.rst

-Network
-=======
-
-SocketServer
-------------
-..  doxygenclass:: paddle::SocketServer
-    :members:
-
-SocketWorker
-------------
-..  doxygenclass:: paddle::SocketWorker
-    :members:
-
-SocketClient
-------------
-..  doxygenclass:: paddle::SocketClient
-    :members:
-
-SocketChannel
--------------
-..  doxygenclass:: paddle::SocketChannel
-    :members:
-
-MessageReader
--------------
-..  doxygenclass:: paddle::MsgReader
-    :members:

doc/howto/source/pserver/server.rst

-Server
-======
-
-ProtoServer
------------
-..  doxygenclass:: paddle::ProtoServer
-    :members:
-
-ParameterServer2
-----------------
-..  doxygenclass:: paddle::ParameterServer2
-    :members:

doc/howto/source/trainer.rst

-Trainer
-=======
-
-TrainerStats
-------------
-
-..  doxygenclass:: paddle::TrainerStats
-    :members:
-
-RemoteParameterUpdater
------------------------
-
-..  doxygenclass:: paddle::RemoteParameterUpdater
-    :members:
-
-ConcurrentRemoteParameterUpdater
---------------------------------
-
-..  doxygenclass:: paddle::ConcurrentRemoteParameterUpdater
-    :members:
-
-SparseRemoteParameterUpdater
-----------------------------
-
-..  doxygenclass:: paddle::SparseRemoteParameterUpdater
-    :members:
-
-SparseRemoteParameterUpdaterComposite
--------------------------------------
-
-..  doxygenclass:: paddle::SparseRemoteParameterUpdaterComposite
-    :members:

doc/howto/source/utils/customStackTrace.rst

-CustomStackTrace
-================
-..  doxygenclass:: paddle::CustomStackTrace
-    :members:

doc/howto/source/utils/enum.rst

-Enumeration wrapper
-===================
-..  doxygennamespace:: paddle::enumeration_wrapper

doc/howto/source/utils/index.rst

-Utils
-=====
-
-.. toctree::
-  :maxdepth: 2
-
-  lock.rst
-  queue.rst
-  thread.rst
-  customStackTrace.rst
-  enum.rst

doc/howto/source/utils/lock.rst

-Lock
-====
-
-RWLock
-------
-..  doxygenclass:: paddle::RWLock
-    :members:
-
-ReadLockGuard
--------------
-..  doxygenclass:: paddle::ReadLockGuard
-    :members:
-
-SpinLock
---------
-..  doxygenclass:: paddle::SpinLock
-    :members:
-
-Semaphore
----------
-..  doxygenclass:: paddle::Semaphore
-    :members:
-
-ThreadBarrier
--------------
-..  doxygenclass:: paddle::ThreadBarrier
-    :members:
-
-LockedCondition
----------------
-..  doxygenclass:: paddle::LockedCondition
-    :members:

doc/howto/source/utils/queue.rst

-Queue
-=====
-
-Queue
------
-..  doxygenclass:: paddle::Queue
-    :members:
-
-BlockingQueue 
--------------
-..  doxygenclass:: paddle::BlockingQueue 
-    :members:

doc/howto/source/utils/thread.rst

-Thread
-======
-
-Thread 
-------
-..  doxygenclass:: paddle::Thread
-    :members:
-
-ThreadWorker
-------------
-..  doxygenclass:: paddle::ThreadWorker
-    :members:
-
-SyncThreadPool 
---------------
-..  doxygenclass:: paddle::SyncThreadPool 
-    :members:
-    
-MultiThreadWorker 
------------------
-..  doxygenclass:: paddle::MultiThreadWorker 
-    :members:
-
-AsyncThreadPool 
----------------
-..  doxygenclass:: paddle::AsyncThreadPool
-    :members:

paddle/scripts/docker/Dockerfile

@@ -13,7 +13,7 @@ RUN apt-get update \
     && apt-get clean -y
 RUN cd /usr/src/gtest && cmake . && make && sudo cp *.a /usr/lib
 RUN pip install -U BeautifulSoup docopt PyYAML pillow \
-    sphinx sphinx_rtd_theme breathe recommonmark
+    sphinx sphinx_rtd_theme recommonmark
 
 # cmake tends to hide and blur the dependencies between code modules, as
 # noted here https://github.com/PaddlePaddle/Paddle/issues/763. We are

paddle/scripts/docker/Dockerfile.gpu

@@ -13,7 +13,7 @@ RUN apt-get update \
     && apt-get clean -y
 RUN cd /usr/src/gtest && cmake . && make && sudo cp *.a /usr/lib
 RUN pip install -U BeautifulSoup docopt PyYAML pillow \
-    sphinx sphinx_rtd_theme breathe recommonmark
+    sphinx sphinx_rtd_theme recommonmark
 
 # cmake tends to hide and blur the dependencies between code modules, as
 # noted here https://github.com/PaddlePaddle/Paddle/issues/763. We are

paddle/scripts/tools/build_docs/Dockerfile

@@ -3,5 +3,5 @@ COPY build.sh /
 RUN pip install sphinx &&\
     pip install sphinx_rtd_theme &&\
     apt install -y doxygen graphviz &&\
-    pip install breathe recommonmark numpy protobuf==2.6.1
+    pip install recommonmark numpy protobuf==2.6.1
 CMD /build.sh