From c705f065ba403606d39bc972d85f7eba1920f029 Mon Sep 17 00:00:00 2001 From: Yan Chunwei Date: Mon, 2 Oct 2017 16:14:48 -0400 Subject: [PATCH] add TensorArray (#4459) * add tensor array * update * set type --- paddle/framework/CMakeLists.txt | 3 + paddle/framework/tensor_array.cc | 283 ++++++++++++++++++++++++++ paddle/framework/tensor_array.h | 118 +++++++++++ paddle/framework/tensor_array_test.cc | 130 ++++++++++++ 4 files changed, 534 insertions(+) create mode 100644 paddle/framework/tensor_array.cc create mode 100644 paddle/framework/tensor_array.h create mode 100644 paddle/framework/tensor_array_test.cc diff --git a/paddle/framework/CMakeLists.txt b/paddle/framework/CMakeLists.txt index 9140854a96..5d394132b7 100644 --- a/paddle/framework/CMakeLists.txt +++ b/paddle/framework/CMakeLists.txt @@ -43,3 +43,6 @@ add_custom_command(TARGET framework_py_proto POST_BUILD cc_library(backward SRCS backward.cc DEPS net_op) cc_test(backward_test SRCS backward_test.cc DEPS backward recurrent_op device_context) + +cc_library(tensor_array SRCS tensor_array.cc DEPS lod_tensor) +cc_test(tensor_array_test SRCS tensor_array_test.cc DEPS tensor_array place) diff --git a/paddle/framework/tensor_array.cc b/paddle/framework/tensor_array.cc new file mode 100644 index 0000000000..d54714c66c --- /dev/null +++ b/paddle/framework/tensor_array.cc @@ -0,0 +1,283 @@ +/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve. + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + + + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. */ + +#include "paddle/framework/tensor_array.h" + +#include +#include +#include + +namespace paddle { +namespace framework { + +namespace detail { + +/* + * Offer an iterator over the length-sorted lod-tensor's top level. The top + * level of a lod-tensor stores batch-size of sequences, each top-level sequence + * may contains several lower-level sequences, sort top-level lod by the numbers + * of lower-level sequences in descending order, so that during RNN's running, + * the batch-size will keep decreasing, the short sentences will end at the tail + * of each batch. + * + * Let's take a simple lod-tensor for example + * + * |(0) |(1) top-level has two instances + * ||| ||||| lower-level + * + * sort by lower-level's length + * + * |(1) |(0) + * ||||| ||| + * + * when RNN runs, it get 5 batches (equals the number of elements the longest + * sequence has) + * + * ||||| + * ||| + * + * the first three batches has two elements, the last two elements just has 1 + * element each. + */ +struct DynamicBatchUnpacker { + using value_type = float; + + DynamicBatchUnpacker(const LoDTensor& source, size_t level, + bool descend = true) + : source(&source), level(level) { + BuildLengthSortedMeta(descend); + } + + LoDTensor GetBatch(size_t index); + + std::vector meta; + + LoDTensor const* source; + size_t level; + + protected: + void BuildLengthSortedMeta(bool descend); +}; + +LoDTensor PackDynamicBatch(const std::vector& source, + const std::vector& meta, const LoD& lod, + size_t level); + +} // namespace detail + +const LoDTensor& TensorArray::Read(size_t index) const { + PADDLE_ENFORCE_LE(index, MAX_SIZE, "index[%d] too large", index); + if (index >= size()) { + values_.resize(index + 1); + } + return values_[index]; +} + +void TensorArray::Write(size_t index, const LoDTensor& value) { + PADDLE_ENFORCE_LE(index, MAX_SIZE, "index[%d] too large", index); + + if (index >= size()) { + values_.resize(index + 1); + } + + values_[index].Resize(value.dims()); + values_[index].mutable_data(platform::CPUPlace()); + values_[index].CopyFrom(value, platform::CPUPlace()); +} + +void TensorArray::WriteShared(size_t index, const LoDTensor& value) { + PADDLE_ENFORCE_LE(index, MAX_SIZE, "index[%d] too large", index); + if (index >= size()) { + values_.resize(index + 1); + } + + values_[index].ShareDataWith(value); +} + +LoDTensor TensorArray::Pack(size_t level, const std::vector& meta, + const LoD& lod) const { + return detail::PackDynamicBatch(values_, meta, lod, level); +} + +std::vector TensorArray::Unpack(const LoDTensor& source, int level, + bool length_desend) { + detail::DynamicBatchUnpacker unpacker(source, level, + length_desend /*descend*/); + + // find max length of all the sequences + size_t max_length = 0; + for (const auto& seq : unpacker.meta) { + max_length = std::max(max_length, seq.end - seq.begin); + } + + // write batches to values + for (size_t batch_id = 0; batch_id < max_length; batch_id++) { + Write(batch_id, unpacker.GetBatch(batch_id)); + } + + return unpacker.meta; +} + +LoDTensor TensorArray::Stack() const { + LoDTensor result; + if (size() == 0) return result; + + const auto& first_dims = values_.front().dims(); + // check all the values have the same shape + // TODO(superjom) check the same dtypes + for (size_t idx = 1; idx < size(); idx++) { + const auto& value_dims = values_[idx].dims(); + PADDLE_ENFORCE_EQ(first_dims, value_dims); + } + + // copy + auto result_dims = vectorize(first_dims); + result_dims.insert(result_dims.begin(), size()); + result.Resize(make_ddim(result_dims)); + result.mutable_data(platform::CPUPlace()); + + for (size_t idx = 0; idx < size(); idx++) { + result.Slice(idx, idx + 1) + .CopyFrom(Read(idx), platform::CPUPlace()); + } + return result; +} + +void TensorArray::Unstack(const LoDTensor& source) const { + Unstack(source, false /*data_shared*/); +} + +void TensorArray::UnstackShared(const LoDTensor& source) const { + Unstack(source, true /*data_shared*/); +} + +void TensorArray::Unstack(const LoDTensor& source, bool data_shared) const { + size_t first_dim = source.dims()[0]; + DDim value_dims = slice_ddim(source.dims(), 1, source.dims().size()); + PADDLE_ENFORCE_GT(first_dim, 0, + "source should have some data to be unstacked"); + + values_.resize(first_dim); + + for (size_t elem = 0; elem < first_dim; elem++) { + // create a new value + auto& value = values_[elem]; + if (data_shared) { + // share memory + value.ShareDataWith(source.Slice(elem, elem + 1)); + } else { + // copy + value.Resize(value_dims); + value.CopyFrom(source.Slice(elem, elem + 1), + platform::CPUPlace()); + } + } +} + +size_t TensorArray::size() const { return values_.size(); } + +namespace detail { + +void DynamicBatchUnpacker::BuildLengthSortedMeta(bool descend) { + PADDLE_ENFORCE(meta.empty(), "duplicate build meta"); + // collect meta for each sequence in some level + auto lod = SliceLevels(source->lod(), level, level + 1)[0]; + + for (size_t seq_id = 0; seq_id < lod.size() - 1; seq_id++) { + DySeqMeta seq_meta({lod[seq_id], lod[seq_id + 1], seq_id}); + meta.push_back(seq_meta); + } + + PADDLE_ENFORCE_GT(meta.size(), 0, "meta is empty"); + + // sort by length + sort(meta.begin(), meta.end(), + [descend](const DySeqMeta& a, const DySeqMeta& b) { + bool a_ge_b = (a.end - a.begin) > (b.end - b.begin); + return descend ? a_ge_b : !a_ge_b; + }); +} + +LoDTensor DynamicBatchUnpacker::GetBatch(size_t index) { + PADDLE_ENFORCE(!meta.empty(), "should build meta first"); + LoDTensor result; + + // collect indice need to copy to the batch + std::vector indice; + for (size_t seq_id = 0; seq_id < meta.size(); seq_id++) { + const auto& seq_meta = meta[seq_id]; + if (index >= seq_meta.end) break; + indice.push_back(seq_meta.begin + index); + } + + PADDLE_ENFORCE(!indice.empty(), "invalid batch at %d", index); + + // copy the indice of records in LoDTensor + auto record_dims = slice_ddim(source->dims(), 1, source->dims().size()); + auto record_dims_vec = vectorize(record_dims); + record_dims_vec.insert(record_dims_vec.begin(), indice.size()); + result.Resize(make_ddim(record_dims_vec)); + result.mutable_data(platform::CPUPlace()); + + for (size_t i = 0; i < indice.size() - 1; i++) { + auto index = indice[i]; + auto target = result.Slice(i, i + 1); + auto source_ = source->Slice(index, index + 1); + target.CopyFrom(source_, platform::CPUPlace()); + } + + return result; +} + +LoDTensor PackDynamicBatch(const std::vector& source, + const std::vector& meta, const LoD& lod, + size_t level) { + PADDLE_ENFORCE(!source.empty()); + PADDLE_ENFORCE(!meta.empty()); + PADDLE_ENFORCE(!lod.empty()); + + LoDTensor result; + + // init result space + auto record_dims = slice_ddim(source[0].dims(), 1, source[0].dims().size()); + auto record_dims_vec = vectorize(record_dims); + auto height = lod[level].back(); + record_dims_vec.insert(record_dims_vec.begin(), height); + result.Resize(make_ddim(record_dims_vec)); + result.mutable_data(platform::CPUPlace()); + + for (size_t batch_id = 0; batch_id < source.size(); batch_id++) { + for (size_t seq_id = 0; seq_id < meta.size(); seq_id++) { + const auto& seq_meta = meta[seq_id]; + // source is source[batch_id][seq_id] + // target is result[index] + auto index = seq_meta.begin + batch_id; + if (index >= seq_meta.end) break; + auto source_ = source[batch_id].Slice(seq_id, seq_id + 1); + auto target = result.Slice(index, index + 1); + target.CopyFrom(source_, platform::CPUPlace()); + } + } + + result.set_lod(lod); + + return result; +} + +} // namespace detail + +} // namespace framework +} // namespace paddle diff --git a/paddle/framework/tensor_array.h b/paddle/framework/tensor_array.h new file mode 100644 index 0000000000..e76f33d2c0 --- /dev/null +++ b/paddle/framework/tensor_array.h @@ -0,0 +1,118 @@ +/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve. + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. */ + +#pragma once +#include + +#include "paddle/framework/lod_tensor.h" + +namespace paddle { +namespace framework { + +/* + * DyBatchSeqPosition stores indices of the basic element in tensor. It is used + * after lod-tensor's re-assembling, its info can be used to recover the order + * in original lod-tensor. + */ +struct DySeqMeta { + size_t begin; + size_t end; // not included + size_t ori_idx; +}; + +/* + * TensorArray is a C-array-like array of tensors, it is meant to be used with + * dynamic iteration primitives such as while_loop. It is used to segment inputs + * and store states in all time steps. + * + * By providing some methods similar to a C++ array, the difinition of some + * state-based dynamic models such as RNN cound be more natural and highly + * flexible. + */ +class TensorArray { + public: + using value_type = float; + + // max number of values allowed to store. + const size_t MAX_SIZE{100000}; + + /* + * Inputs: + * - value_shared: share memory between tensors. + */ + explicit TensorArray(bool values_shared = true) + : values_shared_(values_shared) {} + + /* + * Read the value at location `index` in the `TensorArray`. + */ + const LoDTensor &Read(size_t index) const; + + /* + * Write value into the index of the TensorArray. + */ + void Write(size_t index, const LoDTensor &value); + + /* + * Write value into the index of the TensorArray, with memory shared. + */ + void WriteShared(size_t index, const LoDTensor &value); + + /* + * Recover the original LoD-arranged LoDTensor with the `values`, `level` and + * `indice_map`. + */ + LoDTensor Pack(size_t level, const std::vector &meta, + const LoD &lod) const; + + /* + * Split LoDTensor in some `level` and write the generated batches to + * `values`, if set `desend`, will sort by length in descending order else in + * ascending order. + */ + std::vector Unpack(const LoDTensor &source, int level, + bool length_desend); + + /* + * Pack the values into a tensor with rank one higher than each tensor in + * values. + */ + LoDTensor Stack() const; + + /* + * Unpacks the given division of a rank-`R` tensor into rank-`(R-1)` tensors. + */ + void Unstack(const LoDTensor &source) const; + + /* + * Unpacks the given division of a rank-`R` tensor into rank-`(R-1)` tensors, + * with memory of tensors shared. + */ + void UnstackShared(const LoDTensor &source) const; + + /* + * Return the number of values. + */ + size_t size() const; + + protected: + void Unstack(const LoDTensor &source, bool data_shared) const; + + private: + mutable std::vector values_; + bool values_shared_; +}; // class TensorArray + +} // namespace framework +} // namespace paddle diff --git a/paddle/framework/tensor_array_test.cc b/paddle/framework/tensor_array_test.cc new file mode 100644 index 0000000000..d9f52509cd --- /dev/null +++ b/paddle/framework/tensor_array_test.cc @@ -0,0 +1,130 @@ +/* Copyright (c) 2016 PaddlePaddle Authors. All Rights Reserve. + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. */ + +#include "paddle/framework/tensor_array.h" + +#include + +namespace paddle { +namespace framework { + +class TensorArrayTester : public ::testing::Test { + protected: + void SetUp() override { + LoDTensor source; + source.Resize(make_ddim({batch_size, dim})); + int* data = source.mutable_data(platform::CPUPlace()); + for (int i = 0; i < 16 * 32; i++) { + data[i] = i; + } + ta.Unstack(source); + } + + TensorArray ta; + const int batch_size = 16; + const int dim = 32; +}; + +TEST_F(TensorArrayTester, Read) { + for (int i = 0; i < batch_size; i++) { + const auto& tensor = ta.Read(i); + ASSERT_EQ(tensor.dims()[0], 1); + ASSERT_EQ(tensor.dims()[1], dim); + } +} + +TEST_F(TensorArrayTester, Write) { + LoDTensor source; + source.Resize(make_ddim({1, dim})); + for (int i = 0; i < dim; i++) { + *(source.mutable_data(platform::CPUPlace()) + i) = i; + } + + ta.Write(2, source); + + const auto& tensor = ta.Read(2); + for (int i = 0; i < dim; i++) { + EXPECT_EQ(*(tensor.data() + i), *(source.data() + i)); + } +} + +TEST_F(TensorArrayTester, WriteShared) { + LoDTensor source; + source.Resize(make_ddim({1, dim})); + for (int i = 0; i < dim; i++) { + *(source.mutable_data(platform::CPUPlace()) + i) = i; + } + + ta.WriteShared(2, source); + + const auto& tensor = ta.Read(2); + for (int i = 0; i < dim; i++) { + EXPECT_EQ(*(tensor.data() + i), *(source.data() + i)); + } + + EXPECT_EQ(source.data(), tensor.data()); +} + +class TensorArrayPackTester : public ::testing::Test { + protected: + virtual void SetUp() override { + lod.push_back(std::vector{0, 2, 9, 13}); + + source.set_lod(lod); + source.Resize(make_ddim({13, 128})); + source.mutable_data(platform::CPUPlace()); + + // content of each setence: 0 1 2 3 4 + const auto& level = lod.front(); + for (size_t i = 0; i < level.size() - 1; i++) { + size_t begin = level[i]; + size_t end = level[i + 1]; + for (size_t j = begin; j < end; j++) { + auto record = source.Slice(j, j + 1); + for (int dim = 0; dim < 128; dim++) { + record.mutable_data(platform::CPUPlace())[dim] = j - begin; + } + } + } + + // unpack + meta = ta.Unpack(source, 0, true); + } + + LoD lod; + TensorArray ta; + LoDTensor source; + std::vector meta; +}; + +TEST_F(TensorArrayPackTester, Unpack) { + ASSERT_EQ(ta.size(), 7UL); + + const auto& t0 = ta.Read(0); + const auto& t1 = ta.Read(1); + + ASSERT_EQ(t0.data()[0], int(0)); + ASSERT_EQ(t1.data()[0], int(1)); +} + +TEST_F(TensorArrayPackTester, Pack) { + LoDTensor packed = ta.Pack(0, meta, lod); +} + +TEST_F(TensorArrayTester, size) { + ASSERT_EQ(ta.size(), static_cast(batch_size)); +} + +} // namespace framework +} // namespace paddle -- GitLab