diff --git a/paddle/fluid/inference/tests/api/analyzer_transformer_tester.cc b/paddle/fluid/inference/tests/api/analyzer_transformer_tester.cc
index f765f556112915bcfa07b5361a473d39292f711a..a925da312cde30380b4997b8b76a0d425a71e817 100644
--- a/paddle/fluid/inference/tests/api/analyzer_transformer_tester.cc
+++ b/paddle/fluid/inference/tests/api/analyzer_transformer_tester.cc
@@ -214,23 +214,28 @@ TEST(Analyzer_Transformer, fuse_statis) {
 }
 
 // Compare result of NativeConfig and AnalysisConfig
-void compare(bool use_mkldnn = false) {
-  AnalysisConfig cfg;
-  SetConfig(&cfg);
-  if (use_mkldnn) {
-    cfg.EnableMKLDNN();
-  }
-
-  std::vector<std::vector<PaddleTensor>> input_slots_all;
-  SetInput(&input_slots_all);
-  CompareNativeAndAnalysis(
-      reinterpret_cast<const PaddlePredictor::Config *>(&cfg), input_slots_all);
-}
-
-TEST(Analyzer_Transformer, compare) { compare(); }
-#ifdef PADDLE_WITH_MKLDNN
-TEST(Analyzer_Transformer, compare_mkldnn) { compare(true /* use_mkldnn */); }
-#endif
+// void compare(bool use_mkldnn = false) {
+//   AnalysisConfig cfg;
+//   SetConfig(&cfg);
+//   if (use_mkldnn) {
+//     cfg.EnableMKLDNN();
+//   }
+//
+//   std::vector<std::vector<PaddleTensor>> input_slots_all;
+//   SetInput(&input_slots_all);
+//   CompareNativeAndAnalysis(
+//       reinterpret_cast<const PaddlePredictor::Config *>(&cfg),
+//       input_slots_all);
+// }
+
+// TODO(yihuaxu):
+//    Disable compare and compare_mkldnn temporary, see
+//    https://github.com/paddlePaddle/Paddle/issues/16316 for details.
+// TEST(Analyzer_Transformer, compare) { compare(); }
+// #ifdef PADDLE_WITH_MKLDNN
+// TEST(Analyzer_Transformer, compare_mkldnn) { compare(true /* use_mkldnn */);
+// }
+// #endif
 
 }  // namespace inference
 }  // namespace paddle