diff --git a/.flake8 b/.flake8
index 1ddbb23cae304bd94b49c9cc41851c427f89528d..e0dabceab8cbf0da9cddae0f861ae75e609ecc15 100644
--- a/.flake8
+++ b/.flake8
@@ -40,30 +40,19 @@ per-file-ignores =
     python/paddle/check_import_scipy.py:F401
     python/paddle/fft.py:F401
     python/paddle/_C_ops.py:F401
-    python/paddle/framework/*:F401
     python/paddle/reader/*:F401
     python/paddle/nn/*:F401
     python/paddle/distributed/*:F401
-    python/paddle/proto/*:F401
-    python/paddle/onnx/*:F401
-    python/paddle/optimizer/*:F401
-    python/paddle/hapi/*:F401
-    python/paddle/autograd/*:F401
     python/paddle/dataset/*:F401
-    python/paddle/io/*:F401
-    python/paddle/cost_model/*:F401
     python/paddle/tests/*:F401
     python/paddle/distribution/*:F401
-    python/paddle/geometric/*:F401
     python/paddle/utils/*:F401
-    python/paddle/vision/*:F401
     python/paddle/quantization/*:F401
     python/paddle/libs/*:F401
     python/paddle/audio/*:F401
     python/paddle/incubate/*:F401
     python/paddle/amp/*:F401
     python/paddle/jit/*:F401
-    python/paddle/static/*:F401
     python/paddle/inference/*:F401
     python/paddle/device/*:F401
     python/paddle/profiler/*:F401