# Copyright (c) 2019 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import sys import os import numpy as np import itertools import logging import paddle.fluid as F import paddle.fluid.layers as L import sklearn.metrics log = logging.getLogger(__name__) __all__ = [ 'Metrics', 'F1', 'Recall', 'Precision', 'Mrr', 'Mean', 'Acc', 'ChunkF1', 'RecallAtPrecision' ] class Metrics(object): def __init__(self): self.saver = [] @property def tensor(self): pass def update(self, *args): pass def eval(self): pass class Mean(Metrics): def __init__(self, t): self.t = t self.reset() def reset(self): self.saver = np.array([]) @property def tensor(self): self.t.persistable = True return self.t, def update(self, args): t, = args t = t.reshape([-1]) self.saver = np.concatenate([self.saver, t]) def eval(self): return self.saver.mean() class Ppl(Mean): def eval(self): return np.exp(self.saver.mean()) class Acc(Mean): def __init__(self, label, pred): self.eq = L.equal(pred, label) self.reset() @property def tensor(self): self.eq.persistable = True return self.eq, class MSE(Mean): def __init__(self, label, pred): diff = pred - label self.mse = diff * diff self.reset() @property def tensor(self): self.mse.persistable = True return self.mse, class Cosine(Mean): def __init__(self, label, pred): self.cos = L.cos_sim(label, pred) self.reset() @property def tensor(self): self.cos.persistable = True return self.cos, class Precision(Metrics): def __init__(self, label, pred): self.label = label self.pred = pred self.reset() def reset(self): self.label_saver = np.array([], dtype=np.bool) self.pred_saver = np.array([], dtype=np.bool) @property def tensor(self): self.label.persistable = True self.pred.persistable = True return self.label, self.pred def update(self, args): label, pred = args label = label.reshape([-1]).astype(np.bool) pred = pred.reshape([-1]).astype(np.bool) if label.shape != pred.shape: raise ValueError( 'Metrics precesion: input not match: label:%s pred:%s' % (label, pred)) self.label_saver = np.concatenate([self.label_saver, label]) self.pred_saver = np.concatenate([self.pred_saver, pred]) def eval(self): tp = (self.label_saver & self.pred_saver).astype(np.int64).sum() t = self.label_saver.astype(np.int64).sum() return tp / t class Recall(Precision): def eval(self): tp = (self.label_saver & self.pred_saver).astype(np.int64).sum() p = (self.label_saver).astype(np.int64).sum() return tp / p class F1(Precision): def eval(self): tp = (self.label_saver & self.pred_saver).astype(np.int64).sum() t = self.label_saver.astype(np.int64).sum() p = self.pred_saver.astype(np.int64).sum() precision = tp / (t + 1.e-6) recall = tp / (p + 1.e-6) return 2 * precision * recall / (precision + recall + 1.e-6) class Auc(Metrics): def __init__(self, label, pred): self.pred = pred self.label = label self.reset() def reset(self): self.pred_saver = np.array([], dtype=np.float32) self.label_saver = np.array([], dtype=np.bool) @property def tensor(self): self.pred.persistable = True self.label.persistable = True return [self.pred, self.label] def update(self, args): pred, label = args pred = pred.reshape([-1]).astype(np.float32) label = label.reshape([-1]).astype(np.bool) self.pred_saver = np.concatenate([self.pred_saver, pred]) self.label_saver = np.concatenate([self.label_saver, label]) def eval(self): fpr, tpr, thresholds = sklearn.metrics.roc_curve( self.label_saver.astype(np.int64), self.pred_saver) auc = sklearn.metrics.auc(fpr, tpr) return auc class RecallAtPrecision(Auc): def __init__(self, label, pred, precision=0.9): super(RecallAtPrecision, self).__init__(label, pred) self.precision = precision def eval(self): self.pred_saver = self.pred_saver.reshape( [self.label_saver.size, -1])[:, -1] precision, recall, thresholds = sklearn.metrics.precision_recall_curve( self.label_saver, self.pred_saver) for p, r in zip(precision, recall): if p > self.precision: return r class PrecisionAtThreshold(Auc): def __init__(self, label, pred, threshold=0.5): super().__init__(label, pred) self.threshold = threshold def eval(self): infered = self.pred_saver > self.threshold correct_num = np.array(infered & self.label_saver).sum() infer_num = infered.sum() return correct_num / (infer_num + 1.e-6) class Mrr(Metrics): def __init__(self, qid, label, pred): self.qid = qid self.label = label self.pred = pred self.reset() def reset(self): self.qid_saver = np.array([], dtype=np.int64) self.label_saver = np.array([], dtype=np.int64) self.pred_saver = np.array([], dtype=np.float32) @property def tensor(self): self.qid.persistable = True self.label.persistable = True self.pred.persistable = True return [self.qid, self.label, self.pred] def update(self, args): qid, label, pred = args if not (qid.shape[0] == label.shape[0] == pred.shape[0]): raise ValueError( 'Mrr dimention not match: qid[%s] label[%s], pred[%s]' % (qid.shape, label.shape, pred.shape)) self.qid_saver = np.concatenate( [self.qid_saver, qid.reshape([-1]).astype(np.int64)]) self.label_saver = np.concatenate( [self.label_saver, label.reshape([-1]).astype(np.int64)]) self.pred_saver = np.concatenate( [self.pred_saver, pred.reshape([-1]).astype(np.float32)]) def eval(self): def key_func(tup): return tup[0] def calc_func(tup): ranks = [ 1. / (rank + 1.) for rank, (_, l, p) in enumerate( sorted( tup, key=lambda t: t[2], reverse=True)) if l != 0 ] if len(ranks): return ranks[0] else: return 0. mrr_for_qid = [ calc_func(tup) for _, tup in itertools.groupby( sorted( zip(self.qid_saver, self.label_saver, self.pred_saver), key=key_func), key=key_func) ] mrr = np.float32(sum(mrr_for_qid) / len(mrr_for_qid)) return mrr class ChunkF1(Metrics): def __init__(self, label, pred, seqlen, num_label): self.label = label self.pred = pred self.seqlen = seqlen self.null_index = num_label - 1 self.label_cnt = 0 self.pred_cnt = 0 self.correct_cnt = 0 def _extract_bio_chunk(self, seq): chunks = [] cur_chunk = None for index in range(len(seq)): tag = seq[index] tag_type = tag // 2 tag_pos = tag % 2 if tag == self.null_index: if cur_chunk is not None: chunks.append(cur_chunk) cur_chunk = None continue if tag_pos == 0: if cur_chunk is not None: chunks.append(cur_chunk) cur_chunk = {} cur_chunk = {"st": index, "en": index + 1, "type": tag_type} else: if cur_chunk is None: cur_chunk = { "st": index, "en": index + 1, "type": tag_type } continue if cur_chunk["type"] == tag_type: cur_chunk["en"] = index + 1 else: chunks.append(cur_chunk) cur_chunk = { "st": index, "en": index + 1, "type": tag_type } if cur_chunk is not None: chunks.append(cur_chunk) return chunks def reset(self): self.label_cnt = 0 self.pred_cnt = 0 self.correct_cnt = 0 @property def tensor(self): self.pred.persistable = True self.label.persistable = True self.seqlen.persistable = True return [self.pred, self.label, self.seqlen] def update(self, args): pred, label, seqlen = args pred = pred.reshape([-1]).astype(np.int32).tolist() label = label.reshape([-1]).astype(np.int32).tolist() seqlen = seqlen.reshape([-1]).astype(np.int32).tolist() max_len = 0 for l in seqlen: max_len = max(max_len, l) for i in range(len(seqlen)): seq_st = i * max_len + 1 seq_en = seq_st + (seqlen[i] - 2) pred_chunks = self._extract_bio_chunk(pred[seq_st:seq_en]) label_chunks = self._extract_bio_chunk(label[seq_st:seq_en]) self.pred_cnt += len(pred_chunks) self.label_cnt += len(label_chunks) pred_index = 0 label_index = 0 while label_index < len(label_chunks) and pred_index < len( pred_chunks): if pred_chunks[pred_index]['st'] < label_chunks[label_index][ 'st']: pred_index += 1 elif pred_chunks[pred_index]['st'] > label_chunks[label_index][ 'st']: label_index += 1 else: if pred_chunks[pred_index]['en'] == label_chunks[label_index]['en'] \ and pred_chunks[pred_index]['type'] == label_chunks[label_index]['type']: self.correct_cnt += 1 pred_index += 1 label_index += 1 def eval(self): if self.pred_cnt == 0: precision = 0.0 else: precision = 1.0 * self.correct_cnt / self.pred_cnt if self.label_cnt == 0: recall = 0.0 else: recall = 1.0 * self.correct_cnt / self.label_cnt if self.correct_cnt == 0: f1 = 0.0 else: f1 = 2 * precision * recall / (precision + recall) return np.float32(f1) class PNRatio(Metrics): def __init__(self, qid, label, pred): self.qid = qid self.label = label self.pred = pred self.saver = {} def reset(self): self.saver = {} @property def tensor(self): self.qid.persistable = True self.label.persistable = True self.pred.persistable = True return [self.qid, self.label, self.pred] def update(self, args): qid, label, pred = args if not (qid.shape[0] == label.shape[0] == pred.shape[0]): raise ValueError('dimention not match: qid[%s] label[%s], pred[%s]' % (qid.shape, label.shape, pred.shape)) qid = qid.reshape([-1]).tolist() label = label.reshape([-1]).tolist() pred = pred.reshape([-1]).tolist() assert len(qid) == len(label) == len(pred) for q, l, p in zip(qid, label, pred): if q not in self.saver: self.saver[q] = [] self.saver[q].append((l, p)) def eval(self): p = 0 n = 0 for qid, outputs in self.saver.items(): for i in range(0, len(outputs)): l1, p1 = outputs[i] for j in range(i + 1, len(outputs)): l2, p2 = outputs[j] if l1 > l2: if p1 > p2: p += 1 elif p1 < p2: n += 1 elif l1 < l2: if p1 < p2: p += 1 elif p1 > p2: n += 1 pn = p / n if n > 0 else 0.0 return np.float32(pn) class BinaryPNRatio(PNRatio): def __init__(self, qid, label, pred): super(BinaryPNRatio, self).__init__(qid, label, pred) def eval(self): p = 0 n = 0 for qid, outputs in self.saver.items(): pos_set = [] neg_set = [] for label, score in outputs: if label == 1: pos_set.append(score) else: neg_set.append(score) for ps in pos_set: for ns in neg_set: if ps > ns: p += 1 elif ps < ns: n += 1 else: continue pn = p / n if n > 0 else 0.0 return np.float32(pn) class PrecisionAtK(Metrics): def __init__(self, qid, label, pred, k=1): self.qid = qid self.label = label self.pred = pred self.k = k self.saver = {} def reset(self): self.saver = {} @property def tensor(self): self.qid.persistable = True self.label.persistable = True self.pred.persistable = True return [self.qid, self.label, self.pred] def update(self, args): qid, label, pred = args if not (qid.shape[0] == label.shape[0] == pred.shape[0]): raise ValueError('dimention not match: qid[%s] label[%s], pred[%s]' % (qid.shape, label.shape, pred.shape)) qid = qid.reshape([-1]).tolist() label = label.reshape([-1]).tolist() pred = pred.reshape([-1]).tolist() assert len(qid) == len(label) == len(pred) for q, l, p in zip(qid, label, pred): if q not in self.saver: self.saver[q] = [] self.saver[q].append((l, p)) def eval(self): right = 0 total = 0 for v in self.saver.values(): v = sorted(v, key=lambda x: x[1], reverse=True) k = min(self.k, len(v)) for i in range(k): if v[i][0] == 1: right += 1 break total += 1 return np.float32(1.0 * right / total) #class SemanticRecallMetrics(Metrics): # def __init__(self, qid, vec, type_id): # self.qid = qid # self.vec = vec # self.type_id = type_id # self.reset() # # def reset(self): # self.saver = [] # # @property # def tensor(self): # return [self.qid, self.vec, self.type_id] # # def update(self, args): # qid, vec, type_id = args # self.saver.append((qid, vec, type_id)) # # def eval(self): # dic = {} # for qid, vec, type_id in self.saver(): # dic.setdefault(i, {}).setdefault(k, []).append(vec) # # for qid in dic: # assert len(dic[qid]) == 3 # qvec = np.arrray(dic[qid][0]) # assert len(qvec) == 1 # ptvec = np.array(dic[qid][1]) # ntvec = np.array(dic[qid][2]) # # np.matmul(qvec, np.transpose(ptvec)) # np.matmul(qvec, np.transpose(ntvec)) #