!pip install -q gradio
import gradio as gr
import os
def molecule(input_pdb):
mol = read_mol(input_pdb)
x = (
"""
"""
)
return f""""""
def get_pdb(pdb_code="", filepath=""):
if pdb_code is None or pdb_code == "":
try:
return filepath.name
except AttributeError as e:
return None
else:
os.system(f"wget -qnc https://files.rcsb.org/view/{pdb_code}.pdb")
return f"{pdb_code}.pdb"
def read_mol(molpath):
with open(molpath, "r") as fp:
lines = fp.readlines()
mol = ""
for l in lines:
mol += l
return mol
def update(fastaName='',fastaContent=''):
if(fastaName==''):
return None
else:
return molecule(fastaName+"_pred.pdb")
demo = gr.Blocks()
with demo:
gr.Markdown("# PDB viewer using 3Dmol.js")
with gr.Row():
with gr.Box():
fastaName = gr.Textbox(interactive=False,label='Fasta label')
fastaContent = gr.Textbox(interactive=False,label='Fasta content')
gr.Examples([["T1026", read_mol( "T1026.fasta")],["T1037", read_mol("T1037.fasta")]], [fastaName,fastaContent])
btn = gr.Button("View")
mol = gr.HTML()
btn.click(fn=update, inputs=[fastaName,fastaContent], outputs=mol)
demo.launch()