# coding: utf8 # Copyright (c) 2019 PaddlePaddle Authors. All Rights Reserve. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from __future__ import absolute_import from __future__ import division from __future__ import print_function from collections import OrderedDict import paddle.fluid as fluid from paddle.fluid.initializer import MSRA from paddle.fluid.param_attr import ParamAttr from .seg_modules import softmax_with_loss from .seg_modules import dice_loss from .seg_modules import bce_loss from .libs import sigmoid_to_softmax class HRNet(object): def __init__(self, num_classes, mode='train', stage1_num_modules=1, stage1_num_blocks=[4], stage1_num_channels=[64], stage2_num_modules=1, stage2_num_blocks=[4, 4], stage2_num_channels=[18, 36], stage3_num_modules=4, stage3_num_blocks=[4, 4, 4], stage3_num_channels=[18, 36, 72], stage4_num_modules=3, stage4_num_blocks=[4, 4, 4, 4], stage4_num_channels=[18, 36, 72, 144], use_bce_loss=False, use_dice_loss=False, class_weight=None, ignore_index=255): # dice_loss或bce_loss只适用两类分割中 if num_classes > 2 and (use_bce_loss or use_dice_loss): raise ValueError( "dice loss and bce loss is only applicable to binary classfication" ) if class_weight is not None: if isinstance(class_weight, list): if len(class_weight) != num_classes: raise ValueError( "Length of class_weight should be equal to number of classes" ) elif isinstance(class_weight, str): if class_weight.lower() != 'dynamic': raise ValueError( "if class_weight is string, must be dynamic!") else: raise TypeError( 'Expect class_weight is a list or string but receive {}'. format(type(class_weight))) self.num_classes = num_classes self.mode = mode self.use_bce_loss = use_bce_loss self.use_dice_loss = use_dice_loss self.class_weight = class_weight self.ignore_index = ignore_index self.stage1_num_modules = stage1_num_modules self.stage1_num_blocks = stage1_num_blocks self.stage1_num_channels = stage1_num_channels self.stage2_num_modules = stage2_num_modules self.stage2_num_blocks = stage2_num_blocks self.stage2_num_channels = stage2_num_channels self.stage3_num_modules = stage3_num_modules self.stage3_num_blocks = stage3_num_blocks self.stage3_num_channels = stage3_num_channels self.stage4_num_modules = stage4_num_modules self.stage4_num_blocks = stage4_num_blocks self.stage4_num_channels = stage4_num_channels def build_net(self, inputs): if self.use_dice_loss or self.use_bce_loss: self.num_classes = 1 image = inputs['image'] logit = self._high_resolution_net(image, self.num_classes) if self.num_classes == 1: out = sigmoid_to_softmax(logit) out = fluid.layers.transpose(out, [0, 2, 3, 1]) else: out = fluid.layers.transpose(logit, [0, 2, 3, 1]) pred = fluid.layers.argmax(out, axis=3) pred = fluid.layers.unsqueeze(pred, axes=[3]) if self.mode == 'train': label = inputs['label'] mask = label != self.ignore_index return self._get_loss(logit, label, mask) else: if self.num_classes == 1: logit = sigmoid_to_softmax(logit) else: logit = fluid.layers.softmax(logit, axis=1) return pred, logit return logit def generate_inputs(self): inputs = OrderedDict() inputs['image'] = fluid.data( dtype='float32', shape=[None, 3, None, None], name='image') if self.mode == 'train': inputs['label'] = fluid.data( dtype='int32', shape=[None, 1, None, None], name='label') elif self.mode == 'eval': inputs['label'] = fluid.data( dtype='int32', shape=[None, 1, None, None], name='label') return inputs def _get_loss(self, logit, label, mask): avg_loss = 0 if not (self.use_dice_loss or self.use_bce_loss): avg_loss += softmax_with_loss( logit, label, mask, num_classes=self.num_classes, weight=self.class_weight, ignore_index=self.ignore_index) else: if self.use_dice_loss: avg_loss += dice_loss(logit, label, mask) if self.use_bce_loss: avg_loss += bce_loss( logit, label, mask, ignore_index=self.ignore_index) return avg_loss def _conv_bn_layer(self, input, filter_size, num_filters, stride=1, padding=1, num_groups=1, if_act=True, name=None): conv = fluid.layers.conv2d( input=input, num_filters=num_filters, filter_size=filter_size, stride=stride, padding=(filter_size - 1) // 2, groups=num_groups, act=None, param_attr=ParamAttr(initializer=MSRA(), name=name + '_weights'), bias_attr=False) bn_name = name + '_bn' bn = fluid.layers.batch_norm( input=conv, param_attr=ParamAttr( name=bn_name + "_scale", initializer=fluid.initializer.Constant(1.0)), bias_attr=ParamAttr( name=bn_name + "_offset", initializer=fluid.initializer.Constant(0.0)), moving_mean_name=bn_name + '_mean', moving_variance_name=bn_name + '_variance') if if_act: bn = fluid.layers.relu(bn) return bn def _basic_block(self, input, num_filters, stride=1, downsample=False, name=None): residual = input conv = self._conv_bn_layer( input=input, filter_size=3, num_filters=num_filters, stride=stride, name=name + '_conv1') conv = self._conv_bn_layer( input=conv, filter_size=3, num_filters=num_filters, if_act=False, name=name + '_conv2') if downsample: residual = self._conv_bn_layer( input=input, filter_size=1, num_filters=num_filters, if_act=False, name=name + '_downsample') return fluid.layers.elementwise_add(x=residual, y=conv, act='relu') def _bottleneck_block(self, input, num_filters, stride=1, downsample=False, name=None): residual = input conv = self._conv_bn_layer( input=input, filter_size=1, num_filters=num_filters, name=name + '_conv1') conv = self._conv_bn_layer( input=conv, filter_size=3, num_filters=num_filters, stride=stride, name=name + '_conv2') conv = self._conv_bn_layer( input=conv, filter_size=1, num_filters=num_filters * 4, if_act=False, name=name + '_conv3') if downsample: residual = self._conv_bn_layer( input=input, filter_size=1, num_filters=num_filters * 4, if_act=False, name=name + '_downsample') return fluid.layers.elementwise_add(x=residual, y=conv, act='relu') def _fuse_layers(self, x, channels, multi_scale_output=True, name=None): out = [] for i in range(len(channels) if multi_scale_output else 1): residual = x[i] shape = fluid.layers.shape(residual)[-2:] for j in range(len(channels)): if j > i: y = self._conv_bn_layer( x[j], filter_size=1, num_filters=channels[i], if_act=False, name=name + '_layer_' + str(i + 1) + '_' + str(j + 1)) y = fluid.layers.resize_bilinear(input=y, out_shape=shape) residual = fluid.layers.elementwise_add( x=residual, y=y, act=None) elif j < i: y = x[j] for k in range(i - j): if k == i - j - 1: y = self._conv_bn_layer( y, filter_size=3, num_filters=channels[i], stride=2, if_act=False, name=name + '_layer_' + str(i + 1) + '_' + str(j + 1) + '_' + str(k + 1)) else: y = self._conv_bn_layer( y, filter_size=3, num_filters=channels[j], stride=2, name=name + '_layer_' + str(i + 1) + '_' + str(j + 1) + '_' + str(k + 1)) residual = fluid.layers.elementwise_add( x=residual, y=y, act=None) residual = fluid.layers.relu(residual) out.append(residual) return out def _branches(self, x, block_num, channels, name=None): out = [] for i in range(len(channels)): residual = x[i] for j in range(block_num[i]): residual = self._basic_block( residual, channels[i], name=name + '_branch_layer_' + str(i + 1) + '_' + str(j + 1)) out.append(residual) return out def _high_resolution_module(self, x, blocks, channels, multi_scale_output=True, name=None): residual = self._branches(x, blocks, channels, name=name) out = self._fuse_layers( residual, channels, multi_scale_output=multi_scale_output, name=name) return out def _transition_layer(self, x, in_channels, out_channels, name=None): num_in = len(in_channels) num_out = len(out_channels) out = [] for i in range(num_out): if i < num_in: if in_channels[i] != out_channels[i]: residual = self._conv_bn_layer( x[i], filter_size=3, num_filters=out_channels[i], name=name + '_layer_' + str(i + 1)) out.append(residual) else: out.append(x[i]) else: residual = self._conv_bn_layer( x[-1], filter_size=3, num_filters=out_channels[i], stride=2, name=name + '_layer_' + str(i + 1)) out.append(residual) return out def _stage(self, x, num_modules, num_blocks, num_channels, multi_scale_output=True, name=None): out = x for i in range(num_modules): if i == num_modules - 1 and multi_scale_output == False: out = self._high_resolution_module( out, num_blocks, num_channels, multi_scale_output=False, name=name + '_' + str(i + 1)) else: out = self._high_resolution_module( out, num_blocks, num_channels, name=name + '_' + str(i + 1)) return out def _layer1(self, input, num_modules, num_blocks, num_channels, name=None): # num_modules 默认为1,是否增加处理,官网实现为[1],是否对齐。 conv = input for i in range(num_blocks[0]): conv = self._bottleneck_block( conv, num_filters=num_channels[0], downsample=True if i == 0 else False, name=name + '_' + str(i + 1)) return conv def _high_resolution_net(self, input, num_classes): x = self._conv_bn_layer( input=input, filter_size=3, num_filters=self.stage1_num_channels[0], stride=2, if_act=True, name='layer1_1') x = self._conv_bn_layer( input=x, filter_size=3, num_filters=self.stage1_num_channels[0], stride=2, if_act=True, name='layer1_2') la1 = self._layer1( x, self.stage1_num_modules, self.stage1_num_blocks, self.stage1_num_channels, name='layer2') tr1 = self._transition_layer([la1], self.stage1_num_channels, self.stage2_num_channels, name='tr1') st2 = self._stage( tr1, self.stage2_num_modules, self.stage2_num_blocks, self.stage2_num_channels, name='st2') tr2 = self._transition_layer( st2, self.stage2_num_channels, self.stage3_num_channels, name='tr2') st3 = self._stage( tr2, self.stage3_num_modules, self.stage3_num_blocks, self.stage3_num_channels, name='st3') tr3 = self._transition_layer( st3, self.stage3_num_channels, self.stage4_num_channels, name='tr3') st4 = self._stage( tr3, self.stage4_num_modules, self.stage4_num_blocks, self.stage4_num_channels, name='st4') # upsample shape = fluid.layers.shape(st4[0])[-2:] st4[1] = fluid.layers.resize_bilinear(st4[1], out_shape=shape) st4[2] = fluid.layers.resize_bilinear(st4[2], out_shape=shape) st4[3] = fluid.layers.resize_bilinear(st4[3], out_shape=shape) out = fluid.layers.concat(st4, axis=1) last_channels = sum(self.stage4_num_channels) out = self._conv_bn_layer( input=out, filter_size=1, num_filters=last_channels, stride=1, if_act=True, name='conv-2') out = fluid.layers.conv2d( input=out, num_filters=num_classes, filter_size=1, stride=1, padding=0, act=None, param_attr=ParamAttr(initializer=MSRA(), name='conv-1_weights'), bias_attr=False) input_shape = fluid.layers.shape(input)[-2:] out = fluid.layers.resize_bilinear(out, input_shape) return out