* add log_p for auto_grad

* add log_p_op.cc in prim_op_test srcs

* fix bug of wrong op name; add test in test_primops

* add test case of log in testprimapi

* fix bug of test_without_guard

* no need to fix test_without_guard

* move _gradients to primapi and rename to grad

* modify jvp to call forward_grad in primitive mode

* add primapi unittest and remove some unused test cases.

* fix  circular import problem

* move paddle/autograd/functional into paddle/incubate.autograd/functional

* remove unused JacobianBatchLast class

* use yapf to format all python file

* yapf exclude two unittests file for they rely on writing and reading file, and format will break them

* disable diff_py_file because too many diff files cause command following failed

* Updated triple_grad_check func

* add todo for gradient checker and refine some comments

* remove additional code

* add test for warnging in backward.py

* format python code

* support multi input in triple gradient checker

* Add matmul triple grad kernel

* Updated comments of TODO

* Supported some special tests

* Change code-format to follow CI std

* Updated gradient_checker.py

* Fix conflicts

* Removed unnecessary printing log

* Change code style to follow CI std

* merge upstream

* add priops.py

* add_p

* rm useless files

* add sub_p mul_p div_p

* add sqrt_p and tanh_p

* add reshape_p

* add broadcast_p

* Add python primitive wrappers.

* Jvp rules updated.

* JVP rules done for all the 17 primops.

* quick check and fixes.

* add jvp(op, *args)

* add broadcast_p fill_constant_p matmul_p reduce_p reshape_p transpose_p

* add split_p and concat_p

* add gather_p and scatter_add_p

* add slice_select_p and slice_assign_p

* Add transpose rules.

* add multi input check for add_p, sub_p, mul_p, div_p

* update concat_p

* Linearize and transpose in progress..

* refine gather_p and scatter_add_p

* updated.

* update transpose.

* refine slice_assign_p and slice_select_p

* init commit for lower

* Merged with primitive ops.

* small update

* add rules for orig2prim and prim2orig

* add 9 test for prim ops

* add more test and fix some bug

* add more test

* register proto

* Adding primops test.

* add shape valid check for broadcast_p op, and add keepdim attr into reduce_p op proto

* support multi input and multi output for split_p and concat_p

* Test updated.

* update

* fix slice bug for slice_select_p and slice_assign_p

* updated.

* Ops updated.

* Refactor and bug fixes.

* updated.

* finish orig2prim and prim2orig rules

* dtype for axis attr should be long int

* update dtype for axis attr int64_t

* update for iscan CI

* Update primx.

* Refactor vars in primx.

* update for lower transform

* add more shape and dtype check

* update primx.py

* change IndexTensor into int32 dtype

* update

* Fix linearize and transpose.

* Update is_dot

* Update is_dot

* Update is_dot

* add gradient aggregation, fix add_transpose.

* pass first linearize+transpose test.

* update test

* refactor op registration and primx.

* update rule for slice_assign

* try test lower

* update orig2prim and prim2orig

* pass simple lower pass

* update

* Update input types in the unit test.

* orig2prim segfault.

* 50% for adam.minimize

* test updated.

* temp fix erros in removing vars.

* primx updated.

* update for matmul_v2 and reshape2 orig2prim

* update for minimize

* Refine primrules

* Remove some code

* supporting unused and unreachable vars.

* update for use prim2orig in minimize

* fix gather and scatter_add transpose.

* Add rules UT

* update scatter_add

* Refine UT code

* fix nonetype check in topo

* Update gather_p pywrapper.

* remove useless print

* Merge tongxin PR and refine code

* readd some test

* rm useless print

* polish code.

* fix bug in minimize

* add get_input_var_list and get_output_var_list and use it in lower

* Fix scatter_add_p prim2orig

* Update code and fix orig2prim/prim2orig UT

* delete vars after block.desc._remove

* Improve ops and vars clean up logics.

* fix some bug in linearize and lower

* update tanh transpose.

* use set instead of list for var2remove

* test updated.

* polish code.

* fix dot2bar delete.

* merge tx/ad

* add indextensor_dot for gather and scatter_add

* add sorted for set

* Fix scale_orig2prim params

* fix some syntax bug

* add golbal_lower_update list

* Better handling of unused vars.

* update tests.

* Fix elementwise_sub orig2prim

* support none for transpose rule

* Merge and add transform UT

* fix a bug in transpose

* Fix transpose and UT

* a hacky fix for cancat op

* Fix exector place

* Refine variable name

* Add elementwise_mul orig2prim and support p_norm when p=1

* Add sqrt orig2prim rule and UT

* merge wz test

* rename files, add enable_prim, disable_prim, prim_enabled, delete global_lower_update

* fix a bug in test_ad_transform_trans

* revert modify in framework.py

* add paddle.fluid.incubate.ad_transform to  python/setup.py.in

* Fix remove vars error

* Fix p_norm_orig2prim

* merge wz

* Modify the code directory

* Add utils.py and remove get_input/output_vars functions

* Update maolin code

* Rename UT and refine test_ad_transform_primops

* Fix div_p jvp rule

* Add higher derivatives UT

* Remove UT to autograd dir

* Fix comments

* import paddle in primops.py

* Add some error message for assert

* Refine UT class name and refine some comments in primreg.py

* update minimize of paddle/optimizer for supporting new autograd

* resolve cicular importing between backward.py and optimizer.py

* fill gradients and minimize unittest

* Replace `assert isinstance` with `raise TypeError`

* Add some assert message for primx.py

* Polish variable name

* Add some assert message

* add some docstring

* refine some name

* update the format of english documents

* Split test_transform.py to two files to avoid ci error

* fix the document format of enable_prim/disable_prim/prim2orig/prim_enabled

* polish test_gradients_and_minimize

* add default value for prim_enabled api doc

* Remove some UT to avoid windows ci error

* Enlarge test_gradients_and_minimize limit time

* Fix ut limit time
Co-authored-by: Nveyron95 <veyron_wu@163.com>
Co-authored-by: NJiabin Yang <360788950@qq.com>
Co-authored-by: Nlevi131 <limaolin01@baidu.com>
Co-authored-by: NTongxin Bai <waffle.bai@gmail.com>
Co-authored-by: NXiaoxu Chen <chenxx_id@163.com>
Co-authored-by: Nlevi131 <83750468+levi131@users.noreply.github.com>

* native commit for triple grad of sigmod

* Updated unittests files

* init functional jacobian api

* Updated trible_test func

* Updated gradient_checker & test_script

* finish test with dtype float32

* add float64 test case

* polish code

* use atol=1e-5 with dtype float64

* fix for ci

* set timeout for test_jacobian

* fix dygraph grad to support high differential

* polish API docstring

* Updated gradient checker and some related files

* fix double grad strip error for high differential

* fix double grad strip error for high differential

* Add Sigmoid triple grad tests

* fix dygraph double grad dtype error when calling for high differential senario

* Updated triple grad teses func

* Use np.random to initialize ddx

* Updated triple_grad_check func

* add todo for gradient checker and refine some comments

* remove additional code

* add test for warnging in backward.py

* format python code

* support multi input in triple gradient checker

* Add matmul triple grad kernel

* Updated comments of TODO

* Supported some special tests

* Change code-format to follow CI std

* Updated gradient_checker.py

* Fix conflicts

* Removed unnecessary printing log

* Change code style to follow CI std

* merge upstream

* add priops.py

* add_p

* rm useless files

* add sub_p mul_p div_p

* add sqrt_p and tanh_p

* add reshape_p

* add broadcast_p

* Add python primitive wrappers.

* Jvp rules updated.

* JVP rules done for all the 17 primops.

* quick check and fixes.

* add jvp(op, *args)

* add broadcast_p fill_constant_p matmul_p reduce_p reshape_p transpose_p

* add split_p and concat_p

* add gather_p and scatter_add_p

* add slice_select_p and slice_assign_p

* Add transpose rules.

* add multi input check for add_p, sub_p, mul_p, div_p

* update concat_p

* Linearize and transpose in progress..

* refine gather_p and scatter_add_p

* updated.

* update transpose.

* refine slice_assign_p and slice_select_p

* init commit for lower

* Merged with primitive ops.

* small update

* add rules for orig2prim and prim2orig

* add 9 test for prim ops

* add more test and fix some bug

* add more test

* register proto

* Adding primops test.

* add shape valid check for broadcast_p op, and add keepdim attr into reduce_p op proto

* support multi input and multi output for split_p and concat_p

* Test updated.

* update

* fix slice bug for slice_select_p and slice_assign_p

* updated.

* Ops updated.

* Refactor and bug fixes.

* updated.

* finish orig2prim and prim2orig rules

* dtype for axis attr should be long int

* update dtype for axis attr int64_t

* update for iscan CI

* Update primx.

* Refactor vars in primx.

* update for lower transform

* update primx.py

* update

* Fix linearize and transpose.

* Update is_dot

* Update is_dot

* Update is_dot

* add gradient aggregation, fix add_transpose.

* pass first linearize+transpose test.

* update test

* add_prim_op_pywrapper

* Add primops UT

* Fix set_value and update

* Fix code format and PR-CI-Coverage
Co-authored-by: Nveyron95 <veyron_wu@163.com>
Co-authored-by: NJiabin Yang <360788950@qq.com>
Co-authored-by: NTongxin Bai <waffle.bai@gmail.com>
Co-authored-by: N0x45f <wangzhen45@baidu.com>