diff --git a/paddle/fluid/framework/CMakeLists.txt b/paddle/fluid/framework/CMakeLists.txt
index bced7600dc4bbd4d5328e104c8cece15eafceb36..41e7ea1abbff60e4cf8341e103f3587a1f44d3b2 100755
--- a/paddle/fluid/framework/CMakeLists.txt
+++ b/paddle/fluid/framework/CMakeLists.txt
@@ -583,7 +583,7 @@ if(WITH_PYTHON)
        ${PADDLE_BINARY_DIR}/python/paddle/distributed/fleet/proto)
   file(TOUCH
        ${PADDLE_BINARY_DIR}/python/paddle/distributed/fleet/proto/__init__.py)
-  file(TOUCH __init__.py)
+  file(TOUCH ${CMAKE_CURRENT_BINARY_DIR}/__init__.py)
   add_dependencies(
     framework_py_proto trainer_py_proto distributed_strategy_py_proto
     pass_desc_py_proto ps_py_proto pslib_py_proto)
diff --git a/paddle/phi/api/profiler/CMakeLists.txt b/paddle/phi/api/profiler/CMakeLists.txt
index 82d8819f914fdd855cc4c36d9c941931d2bfa2b8..14e3ace536a7ab05798a1150c934699244213622 100644
--- a/paddle/phi/api/profiler/CMakeLists.txt
+++ b/paddle/phi/api/profiler/CMakeLists.txt
@@ -3,7 +3,7 @@ proto_library(phi_profiler_proto SRCS profiler.proto)
 if(WITH_PYTHON AND EXISTS ${PADDLE_BINARY_DIR})
   set(FLUID_PATH ${PADDLE_BINARY_DIR}/python/paddle/fluid)
   py_proto_compile(profiler_py_proto SRCS profiler.proto)
-  file(TOUCH __init__.py)
+  file(TOUCH ${CMAKE_CURRENT_BINARY_DIR}/__init__.py)
   if(NOT WIN32)
     add_custom_command(
       TARGET profiler_py_proto