diff --git a/.flake8 b/.flake8
index f6a6a64a7010c1f2497e212ae15bda058a1ef663..30005bb85411063da06be96122c4ae02460ed9ac 100644
--- a/.flake8
+++ b/.flake8
@@ -37,25 +37,3 @@ per-file-ignores =
     python/paddle/fluid/tests/unittests/collective/fleet/test_hdfs1.py:E101,W191
     # Ignore unused imports in __init__.py
     __init__.py: F401
-    # These files will be fixed later
-    python/paddle/signal.py:F401
-    python/paddle/common_ops_import.py:F401
-    python/paddle/check_import_scipy.py:F401
-    python/paddle/fft.py:F401
-    python/paddle/_C_ops.py:F401
-    python/paddle/reader/*:F401
-    python/paddle/nn/*:F401
-    python/paddle/distributed/*:F401
-    python/paddle/dataset/*:F401
-    python/paddle/tests/*:F401
-    python/paddle/distribution/*:F401
-    python/paddle/utils/*:F401
-    python/paddle/tensor/*:F401
-    python/paddle/fluid/tests/unittests/ir/*:F401
-    python/paddle/fluid/tests/unittests/tokenizer/*:F401
-    python/paddle/fluid/tests/unittests/distribution/*:F401
-    python/paddle/fluid/tests/unittests/distributed_passes/*:F401
-    python/paddle/fluid/tests/unittests/auto_parallel/*:F401
-    python/paddle/fluid/tests/unittests/dygraph_to_static/*:F401
-    python/paddle/fluid/tests/unittests/sequence/*:F401
-    python/paddle/fluid/tests/unittests/mkldnn/*:F401