# Copyright (c) 2019 PaddlePaddle Authors. All Rights Reserved # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """This package implements some common message passing functions to help building graph neural networks. """ import numpy as np import paddle import paddle.fluid as fluid import paddle.fluid.layers as L from pgl.utils import paddle_helper __all__ = ['copy_send', 'weighted_copy_send', 'mean_recv', 'sum_recv', 'max_recv', 'lstm_recv', 'graphsage_sum', 'graphsage_mean', 'pinsage_mean', 'pinsage_sum', 'softmax_agg', 'msg_norm'] def copy_send(src_feat, dst_feat, edge_feat): """doc""" return src_feat["h"] def weighted_copy_send(src_feat, dst_feat, edge_feat): """doc""" return src_feat["h"] * edge_feat["weight"] def mean_recv(feat): """doc""" return fluid.layers.sequence_pool(feat, pool_type="average") def sum_recv(feat): """doc""" return fluid.layers.sequence_pool(feat, pool_type="sum") def max_recv(feat): """doc""" return fluid.layers.sequence_pool(feat, pool_type="max") def lstm_recv(feat): """doc""" hidden_dim = 128 forward, _ = fluid.layers.dynamic_lstm( input=feat, size=hidden_dim * 4, use_peepholes=False) output = fluid.layers.sequence_last_step(forward) return output def graphsage_sum(gw, feature, hidden_size, act, initializer, learning_rate, name): """doc""" msg = gw.send(copy_send, nfeat_list=[("h", feature)]) neigh_feature = gw.recv(msg, sum_recv) self_feature = feature self_feature = fluid.layers.fc(self_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_l.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_l.b_0" ) neigh_feature = fluid.layers.fc(neigh_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_r.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_r.b_0" ) output = fluid.layers.concat([self_feature, neigh_feature], axis=1) output = fluid.layers.l2_normalize(output, axis=1) return output def graphsage_mean(gw, feature, hidden_size, act, initializer, learning_rate, name): """doc""" msg = gw.send(copy_send, nfeat_list=[("h", feature)]) neigh_feature = gw.recv(msg, mean_recv) self_feature = feature self_feature = fluid.layers.fc(self_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_l.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_l.b_0" ) neigh_feature = fluid.layers.fc(neigh_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_r.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_r.b_0" ) output = fluid.layers.concat([self_feature, neigh_feature], axis=1) output = fluid.layers.l2_normalize(output, axis=1) return output def pinsage_mean(gw, feature, hidden_size, act, initializer, learning_rate, name): """doc""" msg = gw.send(weighted_copy_send, nfeat_list=[("h", feature)], efeat_list=["weight"]) neigh_feature = gw.recv(msg, mean_recv) self_feature = feature self_feature = fluid.layers.fc(self_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_l.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_l.b_0" ) neigh_feature = fluid.layers.fc(neigh_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_r.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_r.b_0" ) output = fluid.layers.concat([self_feature, neigh_feature], axis=1) output = fluid.layers.l2_normalize(output, axis=1) return output def pinsage_sum(gw, feature, hidden_size, act, initializer, learning_rate, name): """doc""" msg = gw.send(weighted_copy_send, nfeat_list=[("h", feature)], efeat_list=["weight"]) neigh_feature = gw.recv(msg, sum_recv) self_feature = feature self_feature = fluid.layers.fc(self_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_l.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_l.b_0" ) neigh_feature = fluid.layers.fc(neigh_feature, hidden_size, act=act, param_attr=fluid.ParamAttr(name=name + "_r.w_0", initializer=initializer, learning_rate=learning_rate), bias_attr=name+"_r.b_0" ) output = fluid.layers.concat([self_feature, neigh_feature], axis=1) output = fluid.layers.l2_normalize(output, axis=1) return output def softmax_agg(beta): """Implementation of softmax_agg aggregator, see more information in the paper "DeeperGCN: All You Need to Train Deeper GCNs" (https://arxiv.org/pdf/2006.07739.pdf) Args: msg: the received message, lod-tensor, (batch_size, seq_len, hidden_size) beta: Inverse Temperature Return: An output tensor with shape (num_nodes, hidden_size) """ def softmax_agg_inside(msg): alpha = paddle_helper.sequence_softmax(msg, beta) msg = msg * alpha return fluid.layers.sequence_pool(msg, "sum") return softmax_agg_inside def msg_norm(x, msg, name): """Implementation of message normalization, see more information in the paper "DeeperGCN: All You Need to Train Deeper GCNs" (https://arxiv.org/pdf/2006.07739.pdf) Args: x: centre node feature (num_nodes, feature_size) msg: neighbor node feature (num_nodes, feature_size) name: name for s Return: An output tensor with shape (num_nodes, feature_size) """ s = fluid.layers.create_parameter( shape=[1], dtype='float32', default_initializer= fluid.initializer.ConstantInitializer(value=1.0), name=name + '_s_msg_norm') msg = fluid.layers.l2_normalize(msg, axis=1) x_norm = fluid.layers.reduce_sum(x * x, dim=1, keep_dim=True) msg = msg * x_norm * s return msg