# Copyright (c) 2019 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Model for classifier.""" from __future__ import absolute_import from __future__ import division from __future__ import print_function from __future__ import unicode_literals from __future__ import absolute_import import time import numpy as np import os import math import json import logging import collections import six from scipy.stats import pearsonr, spearmanr from six.moves import xrange import paddle.fluid as fluid from utils.cmrc2018_eval import eval_file from model.ernie import ErnieModel import tokenization log = logging.getLogger(__name__) def create_model(args, pyreader_name, ernie_config, is_training): pyreader = fluid.layers.py_reader( capacity=50, shapes=[[-1, args.max_seq_len, 1], [-1, args.max_seq_len, 1], [-1, args.max_seq_len, 1], [-1, args.max_seq_len, 1], [-1, args.max_seq_len, 1], [-1, 1], [-1, 1], [-1, 1]], dtypes=[ 'int64', 'int64', 'int64', 'int64', 'float32', 'int64', 'int64', 'int64' ], lod_levels=[0, 0, 0, 0, 0, 0, 0, 0], name=pyreader_name, use_double_buffer=True) (src_ids, sent_ids, pos_ids, task_ids, input_mask, start_positions, end_positions, unique_id) = fluid.layers.read_file(pyreader) ernie = ErnieModel( src_ids=src_ids, position_ids=pos_ids, sentence_ids=sent_ids, task_ids=task_ids, input_mask=input_mask, config=ernie_config, use_fp16=args.use_fp16) enc_out = ernie.get_sequence_output() enc_out = fluid.layers.dropout( x=enc_out, dropout_prob=0.1, dropout_implementation="upscale_in_train") logits = fluid.layers.fc( input=enc_out, size=2, num_flatten_dims=2, param_attr=fluid.ParamAttr( name="cls_mrc_out_w", initializer=fluid.initializer.TruncatedNormal(scale=0.02)), bias_attr=fluid.ParamAttr( name="cls_mrc_out_b", initializer=fluid.initializer.Constant(0.))) logits = fluid.layers.transpose(x=logits, perm=[2, 0, 1]) start_logits, end_logits = fluid.layers.unstack(x=logits, axis=0) batch_ones = fluid.layers.fill_constant_batch_size_like( input=start_logits, dtype='int64', shape=[1], value=1) num_seqs = fluid.layers.reduce_sum(input=batch_ones) def compute_loss(logits, positions): loss = fluid.layers.softmax_with_cross_entropy( logits=logits, label=positions) loss = fluid.layers.mean(x=loss) return loss start_loss = compute_loss(start_logits, start_positions) end_loss = compute_loss(end_logits, end_positions) loss = (start_loss + end_loss) / 2.0 if args.use_fp16 and args.loss_scaling > 1.0: loss *= args.loss_scaling graph_vars = { "loss": loss, "num_seqs": num_seqs, "unique_id": unique_id, "start_logits": start_logits, "end_logits": end_logits } for k, v in graph_vars.items(): v.persistable = True return pyreader, graph_vars def evaluate(exe, test_program, test_pyreader, graph_vars, eval_phase, tag_num=None, dev_count=1, examples=None, features=None, args=None): if eval_phase == "train": train_fetch_list = [graph_vars["loss"].name] if "learning_rate" in graph_vars: train_fetch_list.append(graph_vars["learning_rate"].name) outputs = exe.run(fetch_list=train_fetch_list) ret = {"loss": np.mean(outputs[0])} if "learning_rate" in graph_vars: ret["learning_rate"] = float(outputs[1][0]) return ret output_dir = args.checkpoints if not os.path.exists(output_dir): os.makedirs(output_dir) output_prediction_file = os.path.join(output_dir, eval_phase + "_predictions.json") output_nbest_file = os.path.join(output_dir, eval_phase + "_nbest_predictions.json") RawResult = collections.namedtuple( "RawResult", ["unique_id", "start_logits", "end_logits"]) test_pyreader.start() all_results = [] time_begin = time.time() fetch_list = [ graph_vars["unique_id"].name, graph_vars["start_logits"].name, graph_vars["end_logits"].name, graph_vars["num_seqs"].name ] while True: try: np_unique_ids, np_start_logits, np_end_logits, np_num_seqs = exe.run( program=test_program, fetch_list=fetch_list) for idx in range(np_unique_ids.shape[0]): if len(all_results) % 1000 == 0: log.info("Processing example: %d" % len(all_results)) unique_id = int(np_unique_ids[idx]) start_logits = [float(x) for x in np_start_logits[idx].flat] end_logits = [float(x) for x in np_end_logits[idx].flat] all_results.append( RawResult( unique_id=unique_id, start_logits=start_logits, end_logits=end_logits)) except fluid.core.EOFException: test_pyreader.reset() break write_predictions(examples, features, all_results, args.n_best_size, args.max_answer_length, args.do_lower_case, output_prediction_file, output_nbest_file) if eval_phase.find("dev") != -1: data_file = args.dev_set elif eval_phase.find("test") != -1: data_file = args.test_set em, f1, avg, total = eval_file(data_file, output_prediction_file) time_end = time.time() elapsed_time = time_end - time_begin log.info( "[%s evaluation] em: %f, f1: %f, avg: %f, questions: %d, elapsed time: %f" % (eval_phase, em, f1, avg, total, elapsed_time)) def write_predictions(all_examples, all_features, all_results, n_best_size, max_answer_length, do_lower_case, output_prediction_file, output_nbest_file): """Write final predictions to the json file and log-odds of null if needed.""" log.info("Writing predictions to: %s" % (output_prediction_file)) log.info("Writing nbest to: %s" % (output_nbest_file)) example_index_to_features = collections.defaultdict(list) for feature in all_features: example_index_to_features[feature.example_index].append(feature) unique_id_to_result = {} for result in all_results: unique_id_to_result[result.unique_id] = result _PrelimPrediction = collections.namedtuple( # pylint: disable=invalid-name "PrelimPrediction", [ "feature_index", "start_index", "end_index", "start_logit", "end_logit" ]) all_predictions = collections.OrderedDict() all_nbest_json = collections.OrderedDict() for (example_index, example) in enumerate(all_examples): features = example_index_to_features[example_index] prelim_predictions = [] # keep track of the minimum score of null start+end of position 0 for (feature_index, feature) in enumerate(features): result = unique_id_to_result[feature.unique_id] start_indexes = _get_best_indexes(result.start_logits, n_best_size) end_indexes = _get_best_indexes(result.end_logits, n_best_size) for start_index in start_indexes: for end_index in end_indexes: # We could hypothetically create invalid predictions, e.g., predict # that the start of the span is in the question. We throw out all # invalid predictions. if start_index >= len(feature.tokens): continue if end_index >= len(feature.tokens): continue if start_index not in feature.token_to_orig_map: continue if end_index not in feature.token_to_orig_map: continue if not feature.token_is_max_context.get(start_index, False): continue if end_index < start_index: continue length = end_index - start_index + 1 if length > max_answer_length: continue prelim_predictions.append( _PrelimPrediction( feature_index=feature_index, start_index=start_index, end_index=end_index, start_logit=result.start_logits[start_index], end_logit=result.end_logits[end_index])) prelim_predictions = sorted( prelim_predictions, key=lambda x: (x.start_logit + x.end_logit), reverse=True) _NbestPrediction = collections.namedtuple( # pylint: disable=invalid-name "NbestPrediction", ["text", "start_logit", "end_logit"]) seen_predictions = {} nbest = [] for pred in prelim_predictions: if len(nbest) >= n_best_size: break feature = features[pred.feature_index] if pred.start_index > 0: # this is a non-null prediction tok_tokens = feature.tokens[pred.start_index:(pred.end_index + 1 )] orig_doc_start = feature.token_to_orig_map[pred.start_index] orig_doc_end = feature.token_to_orig_map[pred.end_index] orig_tokens = example.doc_tokens[orig_doc_start:(orig_doc_end + 1)] tok_text = " ".join(tok_tokens) # De-tokenize WordPieces that have been split off. tok_text = tok_text.replace(" ##", "") tok_text = tok_text.replace("##", "") # Clean whitespace tok_text = tok_text.strip() tok_text = " ".join(tok_text.split()) orig_text = "".join(orig_tokens) final_text = get_final_text(tok_text, orig_text, do_lower_case) if final_text in seen_predictions: continue seen_predictions[final_text] = True else: final_text = "" seen_predictions[final_text] = True nbest.append( _NbestPrediction( text=final_text, start_logit=pred.start_logit, end_logit=pred.end_logit)) # In very rare edge cases we could have no valid predictions. So we # just create a nonce prediction in this case to avoid failure. if not nbest: nbest.append( _NbestPrediction( text="empty", start_logit=0.0, end_logit=0.0)) total_scores = [] best_non_null_entry = None for entry in nbest: total_scores.append(entry.start_logit + entry.end_logit) probs = _compute_softmax(total_scores) nbest_json = [] for (i, entry) in enumerate(nbest): output = collections.OrderedDict() output["text"] = entry.text output["probability"] = probs[i] output["start_logit"] = entry.start_logit output["end_logit"] = entry.end_logit nbest_json.append(output) assert len(nbest_json) >= 1 all_predictions[example.qas_id] = nbest_json[0]["text"] all_nbest_json[example.qas_id] = nbest_json with open(output_prediction_file, "w") as writer: writer.write(json.dumps(all_predictions, indent=4) + "\n") with open(output_nbest_file, "w") as writer: writer.write(json.dumps(all_nbest_json, indent=4) + "\n") def get_final_text(pred_text, orig_text, do_lower_case): """Project the tokenized prediction back to the original text.""" # When we created the data, we kept track of the alignment between original # (whitespace tokenized) tokens and our WordPiece tokenized tokens. So # now `orig_text` contains the span of our original text corresponding to the # span that we predicted. # # However, `orig_text` may contain extra characters that we don't want in # our prediction. # # For example, let's say: # pred_text = steve smith # orig_text = Steve Smith's # # We don't want to return `orig_text` because it contains the extra "'s". # # We don't want to return `pred_text` because it's already been normalized # (the SQuAD eval script also does punctuation stripping/lower casing but # our tokenizer does additional normalization like stripping accent # characters). # # What we really want to return is "Steve Smith". # # Therefore, we have to apply a semi-complicated alignment heruistic between # `pred_text` and `orig_text` to get a character-to-charcter alignment. This # can fail in certain cases in which case we just return `orig_text`. def _strip_spaces(text): ns_chars = [] ns_to_s_map = collections.OrderedDict() for (i, c) in enumerate(text): if c == " ": continue ns_to_s_map[len(ns_chars)] = i ns_chars.append(c) ns_text = "".join(ns_chars) return (ns_text, ns_to_s_map) # We first tokenize `orig_text`, strip whitespace from the result # and `pred_text`, and check if they are the same length. If they are # NOT the same length, the heuristic has failed. If they are the same # length, we assume the characters are one-to-one aligned. tokenizer = tokenization.BasicTokenizer(do_lower_case=do_lower_case) tok_text = " ".join(tokenizer.tokenize(orig_text)) start_position = tok_text.find(pred_text) if start_position == -1: return orig_text end_position = start_position + len(pred_text) - 1 (orig_ns_text, orig_ns_to_s_map) = _strip_spaces(orig_text) (tok_ns_text, tok_ns_to_s_map) = _strip_spaces(tok_text) if len(orig_ns_text) != len(tok_ns_text): return orig_text # We then project the characters in `pred_text` back to `orig_text` using # the character-to-character alignment. tok_s_to_ns_map = {} for (i, tok_index) in six.iteritems(tok_ns_to_s_map): tok_s_to_ns_map[tok_index] = i orig_start_position = None if start_position in tok_s_to_ns_map: ns_start_position = tok_s_to_ns_map[start_position] if ns_start_position in orig_ns_to_s_map: orig_start_position = orig_ns_to_s_map[ns_start_position] if orig_start_position is None: return orig_text orig_end_position = None if end_position in tok_s_to_ns_map: ns_end_position = tok_s_to_ns_map[end_position] if ns_end_position in orig_ns_to_s_map: orig_end_position = orig_ns_to_s_map[ns_end_position] if orig_end_position is None: return orig_text output_text = orig_text[orig_start_position:(orig_end_position + 1)] return output_text def _get_best_indexes(logits, n_best_size): """Get the n-best logits from a list.""" index_and_score = sorted( enumerate(logits), key=lambda x: x[1], reverse=True) best_indexes = [] for i in range(len(index_and_score)): if i >= n_best_size: break best_indexes.append(index_and_score[i][0]) return best_indexes def _compute_softmax(scores): """Compute softmax probability over raw logits.""" if not scores: return [] max_score = None for score in scores: if max_score is None or score > max_score: max_score = score exp_scores = [] total_sum = 0.0 for score in scores: x = math.exp(score - max_score) exp_scores.append(x) total_sum += x probs = [] for score in exp_scores: probs.append(score / total_sum) return probs