diff --git a/auto/generate_test_runner.rb b/auto/generate_test_runner.rb
index 5b35f5e6b6c606d7e6d74cd49481c25e5b44b7cf..b221663537b48126c9af63a6b64494651dd481f6 100644
--- a/auto/generate_test_runner.rb
+++ b/auto/generate_test_runner.rb
@@ -24,6 +24,7 @@ class UnityTestRunnerGenerator
       require 'yaml'
       yaml_guts = YAML.load_file(config_file)
       yaml_goodness = yaml_guts[:unity] ? yaml_guts[:unity] : yaml_guts[:cmock]
+      raise "No :unity or :cmock section found in #{config_file}" unless yaml_goodness
       options[:cexception] = 1 unless (yaml_goodness[:plugins] & ['cexception', :cexception]).empty?
       options[:order]      = 1 if     (yaml_goodness[:enforce_strict_ordering])
       options[:framework]  =          (yaml_goodness[:framework] || :unity)
@@ -120,7 +121,7 @@ class UnityTestRunnerGenerator
     output.puts('/* AUTOGENERATED FILE. DO NOT EDIT. */')
     output.puts("#include \"#{@options[:framework].to_s}.h\"")
     output.puts('#include "cmock.h"') unless (mocks.empty?)
-    @options[:includes].flatten.each do |includes|
+    @options[:includes].flatten.uniq.compact.each do |includes|
       output.puts("#include \"#{includes.gsub('.h','')}.h\"")
     end
     output.puts('#include <setjmp.h>')
diff --git a/examples/rakefile_helper.rb b/examples/rakefile_helper.rb
index cbf11c837b5dfe92c2a24cb2bd5af1bea179e788..b54d5af0d15a81d1e1502eadbb804bef655c0887 100644
--- a/examples/rakefile_helper.rb
+++ b/examples/rakefile_helper.rb
@@ -9,7 +9,7 @@ module RakefileHelpers
   C_EXTENSION = '.c'
   
   def load_configuration(config_file)
-    $cfg_file = config_file
+    $cfg_file = "../targets/#{config_file}"
     $cfg = YAML.load(File.read($cfg_file))
   end
   
@@ -191,7 +191,7 @@ module RakefileHelpers
       runner_name = test_base + '_Runner.c'
       if $cfg['compiler']['runner_path'].nil?
         runner_path = $cfg['compiler']['build_path'] + runner_name
-        test_gen = UnityTestRunnerGenerator.new
+        test_gen = UnityTestRunnerGenerator.new($cfg_file)
         test_gen.run(test, runner_path)
       else
         runner_path = $cfg['compiler']['runner_path'] + runner_name
diff --git a/rakefile_helper.rb b/rakefile_helper.rb
index 935500813fcd280f8034fdcc00cd9d19781fa079..66f5088e7b0dd41283c3c6f647f57fc7d03008c0 100644
--- a/rakefile_helper.rb
+++ b/rakefile_helper.rb
@@ -16,7 +16,7 @@ module RakefileHelpers
   C_EXTENSION = '.c'
   
   def load_configuration(config_file)
-    $cfg_file = config_file
+    $cfg_file = "targets/#{config_file}" unless $cfg_file =~ /[\\|\/]/
     $cfg = YAML.load(File.read($cfg_file))
     $colour_output = false unless $cfg['colour']
   end
@@ -27,7 +27,7 @@ module RakefileHelpers
   
   def configure_toolchain(config_file=DEFAULT_CONFIG_FILE)
     config_file += '.yml' unless config_file =~ /\.yml$/
-    config_file = "targets/#{config_file}" unless config_file =~ /[\\|\/]/
+    config_file = config_file unless config_file =~ /[\\|\/]/
     load_configuration(config_file)
     configure_clean
   end
@@ -205,8 +205,7 @@ module RakefileHelpers
         runner_path = $cfg['compiler']['runner_path'] + runner_name
       end
       
-      #UnityTestRunnerGenerator.new(:suite_setup => 'puts("\nStarting Test Suite!\n");', :suite_teardown => 'return num_failures;').run(test, runner_path)
-      UnityTestRunnerGenerator.new.run(test, runner_path)
+      UnityTestRunnerGenerator.new($cfg_file).run(test, runner_path)
 
       compile(runner_path, test_defines)
       obj_list << runner_name.ext($cfg['compiler']['object_files']['extension'])
diff --git a/targets/gcc.yml b/targets/gcc.yml
index c75f60e6ac1d4ee84d5acfec512dee9c4615e253..5c6b6098eb8aeca1b5b5e6437c1a5aa566e994ba 100644
--- a/targets/gcc.yml
+++ b/targets/gcc.yml
@@ -35,4 +35,6 @@ linker:
     prefix: '-o'
     extension: '.exe'
     destination: *build_path
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file
diff --git a/targets/gcc_64.yml b/targets/gcc_64.yml
index cbf25f44c231b5775a6e4e7a9ed56e6943fb49f7..f5f6586bb3d677f52164fb8d647815a7a1eb4789 100644
--- a/targets/gcc_64.yml
+++ b/targets/gcc_64.yml
@@ -36,4 +36,6 @@ linker:
     prefix: '-o'
     extension: '.exe'
     destination: *build_path
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file
diff --git a/targets/iar_arm_v4.yml b/targets/iar_arm_v4.yml
index 1f22ce2e02cf3687c0d228fa93891eb01cd9af4d..74f2899fd71165048ec028b5006c8e43915883dd 100644
--- a/targets/iar_arm_v4.yml
+++ b/targets/iar_arm_v4.yml
@@ -31,7 +31,7 @@ compiler:
     items:
       - [*tools_root, 'arm\inc\']
       - 'src\'
-      - '../src/'
+      - '..\src\'
       - *unit_tests_path
       - 'vendor\unity\src\'
   defines:
@@ -83,4 +83,6 @@ simulator:
     - [*tools_root, 'arm\config\ioat91sam7X256.ddf']
     - -d
     - sim
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file
diff --git a/targets/iar_arm_v5.yml b/targets/iar_arm_v5.yml
index 54a1deacb502400962ce3669225dfe7d563d0f3a..bc45153ac551bd225ff55e4d87ab75281b078909 100644
--- a/targets/iar_arm_v5.yml
+++ b/targets/iar_arm_v5.yml
@@ -30,7 +30,7 @@ compiler:
     items:
       - [*tools_root, 'arm\inc\']
       - 'src\'
-      - '../src/'
+      - '..\src\'
       - *unit_tests_path
       - 'vendor\unity\src\'
       - 'iar\iar_v5\incIAR\'
@@ -73,4 +73,6 @@ simulator:
     - [*tools_root, 'arm\config\debugger\atmel\ioat91sam7X256.ddf']
     - -d
     - sim
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file
diff --git a/targets/iar_cortexm3_v5.yml b/targets/iar_cortexm3_v5.yml
index 240c3abf6f1a38044f76a4096c460f48448a9349..dab84013d95a6f306e7e7343662ef28ad1363fd1 100644
--- a/targets/iar_cortexm3_v5.yml
+++ b/targets/iar_cortexm3_v5.yml
@@ -32,7 +32,7 @@ compiler:
    items:
      - [*tools_root, 'arm\inc\']
      - 'src\'
-      - '../src/'
+      - '..\src\'
      - *unit_tests_path
      - 'vendor\unity\src\'
      - 'iar\iar_v5\incIAR\'
@@ -77,4 +77,6 @@ simulator:
    - --cpu=Cortex-M3
    - -d
    - sim
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file
diff --git a/targets/iar_msp430.yml b/targets/iar_msp430.yml
index f41064d7c0906402ac139b613211846131d8eaea..705c23519ad09301543b160e3b6dbdac033134d3 100644
--- a/targets/iar_msp430.yml
+++ b/targets/iar_msp430.yml
@@ -88,4 +88,6 @@ simulator:
     - -p
     - [*core_config, 'MSP430F5438.ddf']
     - -d sim
-colour: true
\ No newline at end of file
+colour: true
+:unity:
+  :plugins: []
\ No newline at end of file