Rather than making include/openssl/foo.h a symlink to
crypto/foo/foo.h, this change moves the file to include/openssl/foo.h
once and for all.

Likewise, move crypto/foo/footest.c to test/footest.c, instead of
symlinking it there.
Originally-by: NGeoff Thorpe <geoff@openssl.org>
Reviewed-by: NRich Salz <rsalz@openssl.org>

Reviewed-by: NTim Hudson <tjh@openssl.org>

C++ style comments.
Signed/unsigned warning in apps.c
Missing targets in jpake/Makefile