diff --git a/arch/x86/kernel/apic/apic_flat_64.c b/arch/x86/kernel/apic/apic_flat_64.c
index 744e6d8af27b8e091bedb5c92bac1bec344395f6..d0c99abc26c32a8f0df48d61485b1f36acb9b4b2 100644
--- a/arch/x86/kernel/apic/apic_flat_64.c
+++ b/arch/x86/kernel/apic/apic_flat_64.c
@@ -161,7 +161,7 @@ static int flat_apic_id_registered(void)
 
 static int flat_phys_pkg_id(int initial_apic_id, int index_msb)
 {
-	return hard_smp_processor_id() >> index_msb;
+	return initial_apic_id >> index_msb;
 }
 
 struct apic apic_flat =  {
diff --git a/arch/x86/kernel/cpu/amd.c b/arch/x86/kernel/cpu/amd.c
index 7e4a459daa644f30309f50e9ca65ece4be85fad7..728b3750a3e8ba5865aae6a551e79a94b37d27c0 100644
--- a/arch/x86/kernel/cpu/amd.c
+++ b/arch/x86/kernel/cpu/amd.c
@@ -272,7 +272,7 @@ static void __cpuinit srat_detect_node(struct cpuinfo_x86 *c)
 #if defined(CONFIG_NUMA) && defined(CONFIG_X86_64)
 	int cpu = smp_processor_id();
 	int node;
-	unsigned apicid = hard_smp_processor_id();
+	unsigned apicid = cpu_has_apic ? hard_smp_processor_id() : c->apicid;
 
 	node = c->phys_proc_id;
 	if (apicid_to_node[apicid] != NUMA_NO_NODE)
diff --git a/arch/x86/kernel/cpu/common.c b/arch/x86/kernel/cpu/common.c
index c1caefc82e62512245f52b17251af69d2b2d2c2b..017c600e05abb527439d714a799fb8328c713eae 100644
--- a/arch/x86/kernel/cpu/common.c
+++ b/arch/x86/kernel/cpu/common.c
@@ -761,6 +761,12 @@ static void __cpuinit identify_cpu(struct cpuinfo_x86 *c)
 	if (this_cpu->c_identify)
 		this_cpu->c_identify(c);
 
+	/* Clear/Set all flags overriden by options, after probe */
+	for (i = 0; i < NCAPINTS; i++) {
+		c->x86_capability[i] &= ~cpu_caps_cleared[i];
+		c->x86_capability[i] |= cpu_caps_set[i];
+	}
+
 #ifdef CONFIG_X86_64
 	c->apicid = apic->phys_pkg_id(c->initial_apicid, 0);
 #endif
diff --git a/arch/x86/kernel/cpu/intel.c b/arch/x86/kernel/cpu/intel.c
index 7437fa133c02dfdde137ca7201fb9734888a85bc..daed39ba2614dbcad31e4725b343d56d0912f05d 100644
--- a/arch/x86/kernel/cpu/intel.c
+++ b/arch/x86/kernel/cpu/intel.c
@@ -229,12 +229,12 @@ static void __cpuinit intel_workarounds(struct cpuinfo_x86 *c)
 }
 #endif
 
-static void __cpuinit srat_detect_node(void)
+static void __cpuinit srat_detect_node(struct cpuinfo_x86 *c)
 {
 #if defined(CONFIG_NUMA) && defined(CONFIG_X86_64)
 	unsigned node;
 	int cpu = smp_processor_id();
-	int apicid = hard_smp_processor_id();
+	int apicid = cpu_has_apic ? hard_smp_processor_id() : c->apicid;
 
 	/* Don't do the funky fallback heuristics the AMD version employs
 	   for now. */
@@ -400,7 +400,7 @@ static void __cpuinit init_intel(struct cpuinfo_x86 *c)
 	}
 
 	/* Work around errata */
-	srat_detect_node();
+	srat_detect_node(c);
 
 	if (cpu_has(c, X86_FEATURE_VMX))
 		detect_vmx_virtcap(c);