ensure the following ! rules are included

SugarCRM.gitignore

@@ -6,7 +6,7 @@
 # the misuse of the repository as backup replacement.
 # For development the cache directory can be safely ignored and
 # therefore it is ignored.
-/cache/
+/cache/*
 !/cache/index.html
 # Ignore some files and directories from the custom directory.
 /custom/history/
@@ -22,6 +22,6 @@
 # Logs files can safely be ignored.
 *.log
 # Ignore the new upload directories.
-/upload/
+/upload/*
 !/upload/index.html
 /upload_backup/